View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8427_high_5 (Length: 532)

Name: NF8427_high_5
Description: NF8427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8427_high_5
NF8427_high_5
[»] chr2 (2 HSPs)
chr2 (20-517)||(10035367-10035859)
chr2 (20-517)||(10095735-10096227)
[»] chr1 (1 HSPs)
chr1 (25-137)||(49077214-49077326)
[»] chr5 (1 HSPs)
chr5 (100-138)||(29358546-29358584)


Alignment Details
Target: chr2 (Bit Score: 453; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 20 - 517
Target Start/End: Complemental strand, 10035859 - 10035367
Alignment:
Q  20 tacaggacatgcggtttgacaacgtggactttgtagtcgactcaaaaattacggctgatgcagttatctcgagaagaagtgatgttacagagttcggcca 119  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10035859 tacaggacatgcggtttgacaacgtggactttgtggtcgactcaaaaattacggctgatgcagttatctcgagaagaagtgatgttacagagttcggcca 10035760  T
Q  120 aattattgcagcatgtcaggatatgatttcctcctacttatatatacatttgaatttcaatttcagaatataaacatgttgaatgcatcaattaaatgtt 219  Q
    ||||||||||  ||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  10035759 aattattgcaatatgtcaggatatgatttcctcctacttata----catttgaatttcaatttcagaatataaacatgttgaatgcatcaattaaat-tt 10035665  T
Q  220 tgtgttcctattcaaaatctggtatttaacacatcctaaatctaaaatttggatgtgtaaatttagaaaaatacacttctggaatctaaaatccaaacac 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  10035664 tgtgttcctattcaaaatctggtatttaacacatcctaaatctaaaatttggacgtgtaaatttagaaaaatacacttctggaatctaaaatccaaacac 10035565  T
Q  320 aataaatacaagatttcatgttgctccatgattgataaggctgcaagtgcacaattctatcgtcgtaataaaaacatcgatcacgggacttgttagtatc 419  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10035564 aataaatacaagatttcatgttgttccatgattgataaggctgcaagtgcacaattctatcgtcgtaataaaaacatcgatcacgggacttgttagtatc 10035465  T
Q  420 aaggttattttttgtaagtgtttagctagatgtttagaatgtttaggaatttgatgattgattgtttttgggaaatatgcagtttaataaaagatgtc 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10035464 aaggttattttttgtaagtgtttagctagatgtttagaatgtttaggaatttgatgattgattgtttttgggaaatatgcagtttaataaaagatgtc 10035367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 20 - 517
Target Start/End: Complemental strand, 10096227 - 10095735
Alignment:
Q  20 tacaggacatgcggtttgacaacgtggactttgtagtcgactcaaaaattacggctgatgcagttatctcgagaagaagtgatgttacagagttcggcca 119  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10096227 tacaggacatgcggtttgacaacgtggactttgtggtcgactcaaaaattacggctgatgcagttatctcgagaagaagtgatgttacagagttcggcca 10096128  T
Q  120 aattattgcagcatgtcaggatatgatttcctcctacttatatatacatttgaatttcaatttcagaatataaacatgttgaatgcatcaattaaatgtt 219  Q
    ||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  10096127 aattattgcagcatgtcaggatatgatttcctcctacttata----catttgaatttcaatttcagaatataaacatgttgaatgcatcaattaaat-tt 10096033  T
Q  220 tgtgttcctattcaaaatctggtatttaacacatcctaaatctaaaatttggatgtgtaaatttagaaaaatacacttctggaatctaaaatccaaacac 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10096032 tgtgttcctattcaaaatctggtatttaacacatcctaaatctaaaatttggatgtgtaaatttagaaaaatacacttctggaatctaaaatccaaacac 10095933  T
Q  320 aataaatacaagatttcatgttgctccatgattgataaggctgcaagtgcacaattctatcgtcgtaataaaaacatcgatcacgggacttgttagtatc 419  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  10095932 aataaatacaagatttcatgttgttccatgattgataaggctgcaagtgcacaattctatcgtcataataaaaacatcgatcatgggacttgttagtatc 10095833  T
Q  420 aaggttattttttgtaagtgtttagctagatgtttagaatgtttaggaatttgatgattgattgtttttgggaaatatgcagtttaataaaagatgtc 517  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  10095832 aaggttattttttgtaagtgtttagctagatgtttagaatgtttaggaatttgatgatcgattgtttttgggaaatatgcagtttaataaaagatgtc 10095735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 25 - 137
Target Start/End: Original strand, 49077214 - 49077326
Alignment:
Q  25 gacatgcggtttgacaacgtggactttgtagtcgactcaaaaattacggctgatgcagttatctcgagaagaagtg-atgttacagagttcggccaaatt 123  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||| || ||||   |  | |||| |  ||||| ||||||| ||||||||||||||     
T  49077214 gacatgcgttttgacaacgtggattttgtagtcgactcaaaaattacagcagatgatatcttatcga-acaaagtgaatgttactgagttcggccaaata 49077312  T
Q  124 attgcagcatgtca 137  Q
    ||||||||||||||    
T  49077313 attgcagcatgtca 49077326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 100 - 138
Target Start/End: Original strand, 29358546 - 29358584
Alignment:
Q  100 gatgttacagagttcggccaaattattgcagcatgtcag 138  Q
    |||||||| |||||||||||||| |||||||||||||||    
T  29358546 gatgttactgagttcggccaaataattgcagcatgtcag 29358584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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