View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8427_low_10 (Length: 381)

Name: NF8427_low_10
Description: NF8427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8427_low_10
NF8427_low_10
[»] chr3 (4 HSPs)
chr3 (153-374)||(53251149-53251370)
chr3 (153-373)||(53236731-53236951)
chr3 (1-72)||(53250925-53250996)
chr3 (1-64)||(53236495-53236558)
[»] chr7 (2 HSPs)
chr7 (156-373)||(44740818-44741035)
chr7 (1-64)||(44740579-44740642)


Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 153 - 374
Target Start/End: Original strand, 53251149 - 53251370
Alignment:
Q  153 gctggtttcctcttctcaagaaatgtatcaaaagctttggctgtatcgggcttctggaggaggacagttttagttgctttcattatttcttcaacagatc 252  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53251149 gctggtttcctcttctcaagaaatgtatcaaaagctttggctgtatcgggcttctggaggaggacagttttagttgctttcattatttcttcaacagatc 53251248  T
Q  253 ttccagtgccaatgtattctgaaacaacctcccatctgcttgaagttcctttgggaaactttcgtattccttttctcaatagctcgatctcttctttagt 352  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53251249 ttccagtgccaatgtattctgaaacaacctcccatctccttgaagttcctttgggaaactttcgtattccttttctcaatagctcgatctcttctttagt 53251348  T
Q  353 ccaaggtttctccttcttctca 374  Q
    ||||||||||||||||||||||    
T  53251349 ccaaggtttctccttcttctca 53251370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 153 - 373
Target Start/End: Original strand, 53236731 - 53236951
Alignment:
Q  153 gctggtttcctcttctcaagaaatgtatcaaaagctttggctgtatcgggcttctggaggaggacagttttagttgctttcattatttcttcaacagatc 252  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  53236731 gctggtttccttttctcaagaaatgtatcaaaagctttggctgtatcgggcttctggaggagaacagttttagttgctttcattatttcttcaacagatc 53236830  T
Q  253 ttccagtgccaatgtattctgaaacaacctcccatctgcttgaagttcctttgggaaactttcgtattccttttctcaatagctcgatctcttctttagt 352  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  53236831 ttccagtgccaatgtattctgaaacaacctcccatctccttgaagttcctttgggaaacttttgtattccttttctcaatagctcaatctcttctttagt 53236930  T
Q  353 ccaaggtttctccttcttctc 373  Q
    |||||||||||||||||||||    
T  53236931 ccaaggtttctccttcttctc 53236951  T

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Target: chr3; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 53250925 - 53250996
Alignment:
Q  1 ctaacgctctttcctgcactacagaccacacctcttgctcaaaaactccttgagagtattccgaactgatgc 72  Q
    |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  53250925 ctaatgctctttcctgcactgcagaccacacctcttgctcaaaaactccttgagagtcttccgaactgatgc 53250996  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 53236495 - 53236558
Alignment:
Q  1 ctaacgctctttcctgcactacagaccacacctcttgctcaaaaactccttgagagtattccga 64  Q
    |||||||||||||||||||| ||||||||  |||||| ||  ||||||||||||||| ||||||    
T  53236495 ctaacgctctttcctgcactgcagaccacggctcttgttctgaaactccttgagagtcttccga 53236558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 156 - 373
Target Start/End: Original strand, 44740818 - 44741035
Alignment:
Q  156 ggtttcctcttctcaagaaatgtatcaaaagctttggctgtatcgggcttctggaggaggacagttttagttgctttcattatttcttcaacagatcttc 255  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||    
T  44740818 ggtttcctcttctcaagaaatgtatcaaaagctttggctgtatcgggcttctggagaagaacggttttagttgctttcattatttcttcaacagatcttc 44740917  T
Q  256 cagtgccaatgtattctgaaacaacctcccatctgcttgaagttcctttgggaaactttcgtattccttttctcaatagctcgatctcttctttagtcca 355  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  44740918 cagtgccaatgtattctgaaacaacctcccatctccttgaagttcctttgggaaacttttgtattccttttctcaatagctcgatctcttctttagtcca 44741017  T
Q  356 aggtttctccttcttctc 373  Q
    ||||||||||||||||||    
T  44741018 aggtttctccttcttctc 44741035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 44740579 - 44740642
Alignment:
Q  1 ctaacgctctttcctgcactacagaccacacctcttgctcaaaaactccttgagagtattccga 64  Q
    |||| ||||||||||||||| |||||||| ||||||| ||  ||||||||||||||| ||||||    
T  44740579 ctaatgctctttcctgcactgcagaccacgcctcttgttctgaaactccttgagagtcttccga 44740642  T

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