View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8427_low_11 (Length: 346)
Name: NF8427_low_11
Description: NF8427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8427_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 34922440 - 34922778
Alignment:
| Q |
1 |
acctggtgcaatatagccacaagagccagctatgatggacatggatttaattcctttcgcagtggtttcgactactttagctagtccaaaatctgccacc |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34922440 |
acctggtgcaatatagccacaagaaccagctatgatggacatggatttaattcctttcgcagtggtttcgactactttagctagtccaaaatctgccacc |
34922539 |
T |
|
| Q |
101 |
cttgcaccaaagtctccatccaacaagatattgttagatttaacatctctatgaacaattgggggaacacagtcatgatggagataagagagtccatctg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34922540 |
cttgcaccaaagtctccatccaacaagatattgttagatttaacatctctatgaacaattgggggaacacagtcatgatggagataagagagtccatctg |
34922639 |
T |
|
| Q |
201 |
cagcatccacagctatcttgtatcttgttggccaatccaacaaccctcctttactgctatgaagcaaatcaccaagactaccattttgcatatactcata |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34922640 |
cagcatccacagctatcttgtatcttgttggccaatccaacaaccctcctttactgctatgaagcaaatcaccaagactaccattttgcatatactcata |
34922739 |
T |
|
| Q |
301 |
aaccaagagctggcaatcccttgtggtacagcaacacca |
339 |
Q |
| |
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||||||||| |||||||||||||||||||| |||||||| |
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| T |
34922740 |
aaccaagagttggcaatcccttgtggtacaacaacacca |
34922778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 228
Target Start/End: Original strand, 40404020 - 40404124
Alignment:
| Q |
124 |
caagatattgttagatttaacatctctatgaacaattgggggaacacagtcatgatggagataagagagtccatctgcagcatccacagctatcttgtat |
223 |
Q |
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|||||||||||| ||||| ||||| | |||||||||| | || |||||||||||| |||||| | || || | |||||| |||||||| || ||||| |
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| T |
40404020 |
caagatattgtttgatttcacatcacgatgaacaattagaggtgaacagtcatgatgtagataacaaagaccctttgcagcttccacagcaattttgtac |
40404119 |
T |
|
| Q |
224 |
cttgt |
228 |
Q |
| |
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||||| |
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| T |
40404120 |
cttgt |
40404124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 179; Significance: 1e-96; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 4196963 - 4196625
Alignment:
| Q |
1 |
acctggtgcaatatagccacaagagccagctatgatggacatggatttaattcctttcgcagtggtttcgactactttagctagtccaaaatctgccacc |
100 |
Q |
| |
|
||||||||| ||||| |||||||| |||||||||| |||||||| || |||||||| || ||| |||||| | ||||||| ||||||||||| ||| |
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| T |
4196963 |
acctggtgcgatatacccacaagacccagctatgacagacatggactttgttcctttcccattggattcgaccgccttagctaccccaaaatctgcgacc |
4196864 |
T |
|
| Q |
101 |
cttgcaccaaagtctccatccaacaagatattgttagatttaacatctctatgaacaattgggggaacacagtcatgatggagataagagagtccatctg |
200 |
Q |
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||||||| ||||||| ||||||||||||| || |||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||| || |||| |
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|
| T |
4196863 |
cttgcactaaagtcttcatccaacaagatgttattagatttaacatctctatgaacaataggaggaacacagtcatgatgcagataagagaggccttctg |
4196764 |
T |
|
| Q |
201 |
cagcatccacagctatcttgtatcttgttggccaatccaacaaccctcctttactgctatgaagcaaatcaccaagactaccattttgcatatactcata |
300 |
Q |
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|
||| | | | ||||||||| || || ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||| |
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|
| T |
4196763 |
cagaagcaagagctatcttatacctagttggccaatccaacaaccctcctttattgctatgcagcaaatcaccaagactaccatttggcatatactcata |
4196664 |
T |
|
| Q |
301 |
aaccaagagctggcaatcccttgtggtacagcaacacca |
339 |
Q |
| |
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|||||| |||| |||||| || ||||||||||||||||| |
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|
| T |
4196663 |
aaccaatagcttgcaatctctagtggtacagcaacacca |
4196625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 76 - 243
Target Start/End: Complemental strand, 38868403 - 38868236
Alignment:
| Q |
76 |
tttagctagtccaaaatctgccacccttgcaccaaagtctccatccaacaagatattgttagatttaacatctctatgaacaattgggggaacacagtca |
175 |
Q |
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|
|||||| | ||||||||| || | | |||||||||| |||||||| | ||| ||||| ||||||| ||||| ||||||||||| || |||||| ||| |
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| T |
38868403 |
tttagcaactccaaaatcagcaatctttgcaccaaattctccatctagcaatatattactagattttacatccctatgaacaataggaacaacacaatca |
38868304 |
T |
|
| Q |
176 |
tgatggagataagagagtccatctgcagcatccacagctatcttgtatcttgttggccaatccaacaa |
243 |
Q |
| |
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|| || | |||||| ||||| || |||||||| ||||| || || ||||||||||||||||||||| |
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|
| T |
38868303 |
tggtgcaaataagaaagtccctcagcagcatcaacagcaattttaagtcttgttggccaatccaacaa |
38868236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 186
Target Start/End: Complemental strand, 43176272 - 43176211
Alignment:
| Q |
125 |
aagatattgttagatttaacatctctatgaacaattgggggaacacagtcatgatggagata |
186 |
Q |
| |
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||||| || ||||||||||||||||| ||||||||||| |||| ||| ||||||| ||||| |
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| T |
43176272 |
aagatgtttttagatttaacatctctgtgaacaattggtggaatgcagccatgatgcagata |
43176211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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