View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8427_low_13 (Length: 327)
Name: NF8427_low_13
Description: NF8427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8427_low_13 |
 | |
|
| [»] chr1 (26 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-166; HSPs: 26)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 17 - 327
Target Start/End: Complemental strand, 11008000 - 11007690
Alignment:
| Q |
17 |
agtacttgcacaatggatgcaatatgaaaattctacactttgacataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11008000 |
agtacttgcacaatggatgcaatatgaaaattctacactttgacataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattt |
11007901 |
T |
|
| Q |
117 |
tggactagctaggctttgtcctacagataaaagcattgttacattaactgcagcaagaggaaccattggatacatggcccctgaactattctaccgaaat |
216 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11007900 |
tggacttgctagactttgtcctacagataaaagcattgtgtcattaactgcagcaagaggaaccattggatacatggcccctgaactattctaccgaaat |
11007801 |
T |
|
| Q |
217 |
gtcggcacgatatcttacaaagctgatgtttatagttttgggatgttgttaatggagatggcaaatagaaggaagaacttggatgtattggctggtcaat |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11007800 |
gtcggcacgatatcttacaaagctgatgtttatagttttgggatgttgttaatggagatggcaaatagaaggaagaacttggatgtattggctggtcaat |
11007701 |
T |
|
| Q |
317 |
ctagccaggtt |
327 |
Q |
| |
|
||||||||||| |
|
|
| T |
11007700 |
ctagccaggtt |
11007690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 17 - 324
Target Start/End: Complemental strand, 11033453 - 11033146
Alignment:
| Q |
17 |
agtacttgcacaatggatgcaatatgaaaattctacactttgacataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattt |
116 |
Q |
| |
|
|||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
11033453 |
agtacttgcataatggatgcgatatgaaaattctacactttgacataaagcctcataacatccttcttgatgagaatttcaacccaaaagtttctgattt |
11033354 |
T |
|
| Q |
117 |
tggactagctaggctttgtcctacagataaaagcattgttacattaactgcagcaagaggaaccattggatacatggcccctgaactattctaccgaaat |
216 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
11033353 |
tggactagctagactttgtcctacagataaaagcattgtcacattaactgcagcaagaggaaccattggatatatggcccctgaactattctaccgaaat |
11033254 |
T |
|
| Q |
217 |
gtcggcacgatatcttacaaagctgatgtttatagttttgggatgttgttaatggagatggcaaatagaaggaagaacttggatgtattggctggtcaat |
316 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||| ||||| |
|
|
| T |
11033253 |
gtcggcacaatatcttacaaagctgatgtttatagttttgggatgttgttgatggagatggcaaatagaaggaagaacttgaatgcattggctgatcaat |
11033154 |
T |
|
| Q |
317 |
ctagccag |
324 |
Q |
| |
|
| |||||| |
|
|
| T |
11033153 |
caagccag |
11033146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 17 - 323
Target Start/End: Complemental strand, 11011162 - 11010856
Alignment:
| Q |
17 |
agtacttgcacaatggatgcaatatgaaaattctacactttgacataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattt |
116 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11011162 |
agtacttgcatcatggatgcaatatgaaaattctacactttgatataaagcctcataacattcttcttgatgaaaatttcaatccaaaagtttctgattt |
11011063 |
T |
|
| Q |
117 |
tggactagctaggctttgtcctacagataaaagcattgttacattaactgcagcaagaggaaccattggatacatggcccctgaactattctaccgaaat |
216 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
11011062 |
tggactagctagactttgtcctacagataaaagcattgtgtcattaactgcagcaagaggaaccattggatatatggcccctgaactattctacagaaat |
11010963 |
T |
|
| Q |
217 |
gtcggcacgatatcttacaaagctgatgtttatagttttgggatgttgttaatggagatggcaaatagaaggaagaacttggatgtattggctggtcaat |
316 |
Q |
| |
|
|| ||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||| ||| |||||||| |||| |
|
|
| T |
11010962 |
gttggcacaatatcttacaaagctgatgtatatagttttgggatgttgttgatggagatggcaagtagaaggaagaacttgaatgcattggctgagcaat |
11010863 |
T |
|
| Q |
317 |
ctagcca |
323 |
Q |
| |
|
| ||||| |
|
|
| T |
11010862 |
ccagcca |
11010856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 17 - 320
Target Start/End: Complemental strand, 10914861 - 10914558
Alignment:
| Q |
17 |
agtacttgcacaatggatgcaatatgaaaattctacactttgacataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattt |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10914861 |
agtacttgcacaatggatgcaatatgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattt |
10914762 |
T |
|
| Q |
117 |
tggactagctaggctttgtcctacagataaaagcattgttacattaactgcagcaagaggaaccattggatacatggcccctgaactattctaccgaaat |
216 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||| ||||||| ||||| |
|
|
| T |
10914761 |
tggactagccaggctttctcctacagataaaagcattgtgtcattaactgcagcaagaggaaccatcggatatatggcccctgaattattctatagaaat |
10914662 |
T |
|
| Q |
217 |
gtcggcacgatatcttacaaagctgatgtttatagttttgggatgttgttaatggagatggcaaatagaaggaagaacttggatgtattggctggtcaat |
316 |
Q |
| |
|
|||||||| |||||| ||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||| ||| ||| |||||||| ||||| |
|
|
| T |
10914661 |
gtcggcacaatatctcacaaagctgatgtatatagctttgggatgttgttaatggagatggcaagcagaaggaagaatttgaatgcattggctgatcaat |
10914562 |
T |
|
| Q |
317 |
ctag |
320 |
Q |
| |
|
|||| |
|
|
| T |
10914561 |
ctag |
10914558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 19 - 323
Target Start/End: Original strand, 11004862 - 11005166
Alignment:
| Q |
19 |
tacttgcacaatggatgcaatatgaaaattctacactttgacataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttg |
118 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11004862 |
tacttgcataatggatgcaatatgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttg |
11004961 |
T |
|
| Q |
119 |
gactagctaggctttgtcctacagataaaagcattgttacattaactgcagcaagaggaaccattggatacatggcccctgaactattctaccgaaatgt |
218 |
Q |
| |
|
|| |||||||| ||| ||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
11004962 |
gattagctagggtttctcctacagacaaaagcattgtgtccttaactgcagcaagaggaaccattggatacatggcccctgaactattctacagaaatgt |
11005061 |
T |
|
| Q |
219 |
cggcacgatatcttacaaagctgatgtttatagttttgggatgttgttaatggagatggcaaatagaaggaagaacttggatgtattggctggtcaatct |
318 |
Q |
| |
|
|||||| |||||| ||||||||||||| ||||| |||||||||||||| ||||||||||||| |||||||||||||||| || |||||||| |||||| |
|
|
| T |
11005062 |
cggcacaatatctcacaaagctgatgtctatagctttgggatgttgttgatggagatggcaagtagaaggaagaacttgaatccattggctgagcaatct |
11005161 |
T |
|
| Q |
319 |
agcca |
323 |
Q |
| |
|
|||| |
|
|
| T |
11005162 |
tgcca |
11005166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 39 - 323
Target Start/End: Complemental strand, 10979574 - 10979290
Alignment:
| Q |
39 |
tatgaaaattctacactttgacataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggactagctaggctttgtcct |
138 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
10979574 |
tatgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgctagactttgtcct |
10979475 |
T |
|
| Q |
139 |
acagataaaagcattgttacattaactgcagcaagaggaaccattggatacatggcccctgaactattctaccgaaatgtcggcacgatatcttacaaag |
238 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||| ||||| ||||||||||||| |
|
|
| T |
10979474 |
acagataaaagctttgtgtcattaactgcagcaagagggaccattggatacatggctcctgaactattctacagaaatgttggcacaatatcttacaaag |
10979375 |
T |
|
| Q |
239 |
ctgatgtttatagttttgggatgttgttaatggagatggcaaatagaaggaagaacttggatgtattggctggtcaatctagcca |
323 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||||||||||| |||||||| ||||||| ||| | |||||| ||||||||||| |
|
|
| T |
10979374 |
ctgatgtatatagttttgggatgttgttgatggagatggcaagtagaaggaggaacttgaatgcaatggctgagcaatctagcca |
10979290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 17 - 323
Target Start/End: Original strand, 11028445 - 11028751
Alignment:
| Q |
17 |
agtacttgcacaatggatgcaatatgaaaattctacactttgacataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattt |
116 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
11028445 |
agtacttgcataatggatgtaatatgaaaattctacactttgatataaagcctcataacatccttcttgatgagaattttaatccaaaagtttctgattt |
11028544 |
T |
|
| Q |
117 |
tggactagctaggctttgtcctacagataaaagcattgttacattaactgcagcaagaggaaccattggatacatggcccctgaactattctaccgaaat |
216 |
Q |
| |
|
||||||||||| ||||||||||||| ||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
11028545 |
cggactagctagactttgtcctacaggtaatagcattgtgtcattaactgcagcaagaagaaccattggatacatggcccctgaactattctatagaaat |
11028644 |
T |
|
| Q |
217 |
gtcggcacgatatcttacaaagctgatgtttatagttttgggatgttgttaatggagatggcaaatagaaggaagaacttggatgtattggctggtcaat |
316 |
Q |
| |
|
|| ||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||| || |||||||||||||| | | ||| |||||||| |||| |
|
|
| T |
11028645 |
gttggcacaatatcttacaaagctgatgtctatagctttgggatgttgttaatggagattgcgaatagaaggaagaattagaatgcattggctgaacaat |
11028744 |
T |
|
| Q |
317 |
ctagcca |
323 |
Q |
| |
|
||||||| |
|
|
| T |
11028745 |
ctagcca |
11028751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 17 - 323
Target Start/End: Complemental strand, 10974518 - 10974212
Alignment:
| Q |
17 |
agtacttgcacaatggatgcaatatgaaaattctacactttgacataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattt |
116 |
Q |
| |
|
||||||| || |||||||| |||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
10974518 |
agtactttcataatggatgtgatatgaaaattctacactttgatataaagcctcataccatccttcttgatgaatatttcaatccaaaagtttctgattt |
10974419 |
T |
|
| Q |
117 |
tggactagctaggctttgtcctacagataaaagcattgttacattaactgcagcaagaggaaccattggatacatggcccctgaactattctaccgaaat |
216 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
10974418 |
tggacttgctagactttgtcctacagataaaagcattgtgccattaactgctgcaagaggaacgattggatacatggcccctgaactgttctacagaaat |
10974319 |
T |
|
| Q |
217 |
gtcggcacgatatcttacaaagctgatgtttatagttttgggatgttgttaatggagatggcaaatagaaggaagaacttggatgtattggctggtcaat |
316 |
Q |
| |
|
| ||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||| | |||||||||||| ||| ||| |||||| | ||||| |
|
|
| T |
10974318 |
attggcacaatatcttacaaagctgatgtctatagctttgggatgttgttaatggagatggcgagtagaaggaagaatttgaatgcattggccgatcaat |
10974219 |
T |
|
| Q |
317 |
ctagcca |
323 |
Q |
| |
|
||||||| |
|
|
| T |
10974218 |
ctagcca |
10974212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 323
Target Start/End: Complemental strand, 10903697 - 10903395
Alignment:
| Q |
18 |
gtacttgcacaatggatgcaatatgaaaattctacactttgacataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgatttt |
117 |
Q |
| |
|
||||||||| || ||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
10903697 |
gtacttgcataacggatgcaatgtgaaaattctacactttgatataaagcctcataacattcttcttgatgaaagtttcaatccaaaagtttctgatttt |
10903598 |
T |
|
| Q |
118 |
ggactagctaggctttgtcctacagataaaagcattgttacattaactgcagcaagaggaaccattggatacatggcccctgaactattctaccgaaatg |
217 |
Q |
| |
|
||||| || || |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||| |
|
|
| T |
10903597 |
ggacttgccagactttctcctacagataaaagcattgtgtcattaactgcagcaagaggaaccattggata---tgcccctgaacttttctacagaaatg |
10903501 |
T |
|
| Q |
218 |
tcggcacgatatcttacaaagctgatgtttatagttttgggatgttgttaatggagatggcaaatagaaggaagaacttggatgtattggctggtcaatc |
317 |
Q |
| |
|
| || | ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||| ||| |||||| | ||||| |
|
|
| T |
10903500 |
ttggaatgatatcttacaaagctgatgtctatagctttgggatgttgttaatggagatggcaagtagaaggaagaacttgaatgcattggccgaacaatc |
10903401 |
T |
|
| Q |
318 |
tagcca |
323 |
Q |
| |
|
|||||| |
|
|
| T |
10903400 |
tagcca |
10903395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 148 - 310
Target Start/End: Complemental strand, 10901730 - 10901568
Alignment:
| Q |
148 |
agcattgttacattaactgcagcaagaggaaccattggatacatggcccctgaactattctaccgaaatgtcggcacgatatcttacaaagctgatgttt |
247 |
Q |
| |
|
||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||| ||||||||||||| | |
|
|
| T |
10901730 |
agcattgtttcattaacagcagcaagaggaaccattggatacatggcccctgaattattctacagaaatgtcggcacaatatctcacaaagctgatgtct |
10901631 |
T |
|
| Q |
248 |
atagttttgggatgttgttaatggagatggcaaatagaaggaagaacttggatgtattggctg |
310 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||| |||||||||||||||| ||| |||||||| |
|
|
| T |
10901630 |
atagttttggaatgttgttgatggagatggcaagtagaaggaagaacttgaatgcattggctg |
10901568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 38 - 257
Target Start/End: Original strand, 9453683 - 9453902
Alignment:
| Q |
38 |
atatgaaaattctacactttgacataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggactagctaggctttgtcc |
137 |
Q |
| |
|
||||| ||||| | || ||||| || |||||||| |||||||||||||| |||||||||| || |||||||| |||||||| || || | ||||| ||| |
|
|
| T |
9453683 |
atatgcaaattttgcattttgatattaagcctcacaacatccttcttgacgaaaatttcatccctaaagtttcagattttggtcttgcaaagctttatcc |
9453782 |
T |
|
| Q |
138 |
tacagataaaagcattgttacattaactgcagcaagaggaaccattggatacatggcccctgaactattctaccgaaatgtcggcacgatatcttacaaa |
237 |
Q |
| |
|
|| || || |||||||| | || || |||||||||||||| ||||| |||||||| |||||| | ||||||| |||| | || | ||||| |||| |
|
|
| T |
9453783 |
tattgacaatagcattgtcgctttgacagcagcaagaggaacaattggttacatggctcctgaattgttctaccaaaatattgggagaatatcacacaag |
9453882 |
T |
|
| Q |
238 |
gctgatgtttatagttttgg |
257 |
Q |
| |
|
|| ||||| ||||||||||| |
|
|
| T |
9453883 |
gccgatgtgtatagttttgg |
9453902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 55 - 210
Target Start/End: Complemental strand, 9320136 - 9319981
Alignment:
| Q |
55 |
tttgacataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggactagctaggctttgtcctacagataaaagcattg |
154 |
Q |
| |
|
||||| || ||||| |||||||||||||||||||| || || | || |||||||| || ||||| || |||| ||||| ||||| || | ||||||| |
|
|
| T |
9320136 |
tttgatatcaagccccataacatccttcttgatgagaactttatccccaaagtttcagactttggtcttgctaagctttatcctaatgagattagcattg |
9320037 |
T |
|
| Q |
155 |
ttacattaactgcagcaagaggaaccattggatacatggcccctgaactattctac |
210 |
Q |
| |
|
| || |||||||||||||||||||| |||||||| ||||| |||||| | |||||| |
|
|
| T |
9320036 |
tcactttaactgcagcaagaggaacaattggatatatggctcctgaattgttctac |
9319981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 38 - 257
Target Start/End: Original strand, 9432696 - 9432915
Alignment:
| Q |
38 |
atatgaaaattctacactttgacataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggactagctaggctttgtcc |
137 |
Q |
| |
|
||||| ||||| | || ||||| || |||||||| ||||||||||| || |||||||||| || |||||||| || ||||| || || | ||||| ||| |
|
|
| T |
9432696 |
atatgcaaattttgcattttgatattaagcctcacaacatccttctggacgaaaatttcatccctaaagtttcggactttggtcttgcaaagctttatcc |
9432795 |
T |
|
| Q |
138 |
tacagataaaagcattgttacattaactgcagcaagaggaaccattggatacatggcccctgaactattctaccgaaatgtcggcacgatatcttacaaa |
237 |
Q |
| |
|
|| || |||||||||| || || || |||||||||||||| ||||| |||||||| |||||| | ||||||| |||| | || | ||||| |||| |
|
|
| T |
9432796 |
tattgacaaaagcattgccactttgacggcagcaagaggaacaattggttacatggctcctgaattgttctaccaaaatattgggagaatatcacacaag |
9432895 |
T |
|
| Q |
238 |
gctgatgtttatagttttgg |
257 |
Q |
| |
|
|| ||||| ||||||||||| |
|
|
| T |
9432896 |
gccgatgtgtatagttttgg |
9432915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 38 - 208
Target Start/End: Complemental strand, 9399883 - 9399713
Alignment:
| Q |
38 |
atatgaaaattctacactttgacataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggactagctaggctttgtcc |
137 |
Q |
| |
|
||||| ||||| | || ||||| || |||||||| |||||||||||||| |||||||||| || |||||||| || ||||| || || | ||||| ||| |
|
|
| T |
9399883 |
atatgcaaattttgcattttgatattaagcctcacaacatccttcttgacgaaaatttcatccctaaagtttcggactttggtcttgcaaagctttatcc |
9399784 |
T |
|
| Q |
138 |
tacagataaaagcattgttacattaactgcagcaagaggaaccattggatacatggcccctgaactattct |
208 |
Q |
| |
|
|| || |||||||||| || || | |||||||||||||| ||||| |||||||| |||||||| |||| |
|
|
| T |
9399783 |
tattgacaaaagcattgccactttgatggcagcaagaggaacaattggttacatggctcctgaactgttct |
9399713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 29 - 194
Target Start/End: Complemental strand, 8964772 - 8964607
Alignment:
| Q |
29 |
atggatgcaatatgaaaattctacactttgacataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggactagctag |
128 |
Q |
| |
|
|||||||| | ||||| ||| | || ||||| || |||||||| ||||||||||||||||| ||||||| |||||||| ||||| |||||| | |||| |
|
|
| T |
8964772 |
atggatgcgaaatgaagattttgcattttgatattaagcctcacaacatccttcttgatgagaatttcaccccaaaagtctctgactttggattggctaa |
8964673 |
T |
|
| Q |
129 |
gctttgtcctacagataaaagcattgttacattaactgcagcaagaggaaccattggatacatggc |
194 |
Q |
| |
|
||| | |||| ||| || |||||||| ||| | || || |||||||| ||||||||||| ||||| |
|
|
| T |
8964672 |
gctatatcctgtagagaatagcattgtcacaatgacagcggcaagaggtaccattggatatatggc |
8964607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 55 - 200
Target Start/End: Complemental strand, 9350453 - 9350308
Alignment:
| Q |
55 |
tttgacataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggactagctaggctttgtcctacagataaaagcattg |
154 |
Q |
| |
|
||||| || ||||| |||||||||||||||||||| || || | || |||||||| || ||||| || |||| ||||| ||||| || | ||||||| |
|
|
| T |
9350453 |
tttgatatcaagccccataacatccttcttgatgagaactttatccccaaagtttcagactttggtcttgctaagctttatcctaatgagattagcattg |
9350354 |
T |
|
| Q |
155 |
ttacattaactgcagcaagaggaaccattggatacatggcccctga |
200 |
Q |
| |
|
| || |||||||||||||||||||| |||||||| ||||| ||||| |
|
|
| T |
9350353 |
tcactttaactgcagcaagaggaacaattggatatatggctcctga |
9350308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #17
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 55 - 210
Target Start/End: Original strand, 9318166 - 9318321
Alignment:
| Q |
55 |
tttgacataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggactagctaggctttgtcctacagataaaagcattg |
154 |
Q |
| |
|
||||| || ||||| |||||||||||||||||||| || || | ||| |||||||| || ||||| || || | ||||| ||| | || | ||||||| |
|
|
| T |
9318166 |
tttgatatcaagccccataacatccttcttgatgagaactttattcccaaagtttcagactttggtctggcaaagctttatccaaatgacattagcattg |
9318265 |
T |
|
| Q |
155 |
ttacattaactgcagcaagaggaaccattggatacatggcccctgaactattctac |
210 |
Q |
| |
|
| || ||||||||||| |||||||| |||||||||||||| |||||| | |||||| |
|
|
| T |
9318266 |
tcactttaactgcagctagaggaacaattggatacatggctcctgaattgttctac |
9318321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 279
Target Start/End: Complemental strand, 8999923 - 8999673
Alignment:
| Q |
29 |
atggatgcaatatgaaaattctacactttgacataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggactagctag |
128 |
Q |
| |
|
|||||||| | ||||| ||| |||| ||||| || |||||||| |||||||||||||||||||| |||| |||||||| ||||| || ||| | |||| |
|
|
| T |
8999923 |
atggatgcgaaatgaagattttacattttgatatcaagcctcacaacatccttcttgatgaaaacttcacaccaaaagtctctgacttcggattggctaa |
8999824 |
T |
|
| Q |
129 |
gctttgtcctacagataaaagcattgttacattaactgcagcaagaggaaccattggatacatggcccctgaactattctaccgaaatgtcggcacgata |
228 |
Q |
| |
|
||| | ||| || || |||||||| ||| | ||||| |||||||| ||||||||||| ||||| || ||| | ||||| |||| | || | |
|
|
| T |
8999823 |
gctatatcccgtggagaatagcattgtcacaatgactgcggcaagaggtaccattggatatatggctccagaattgttctataaaaatattgggggagtg |
8999724 |
T |
|
| Q |
229 |
tcttacaaagctgatgtttatagttttgggatgttgttaatggagatggca |
279 |
Q |
| |
|
||||| || |||||||||||||| ||||||||| | || |||||||||||| |
|
|
| T |
8999723 |
tcttataaggctgatgtttatagctttgggatgcttttgatggagatggca |
8999673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 55 - 278
Target Start/End: Complemental strand, 9488784 - 9488561
Alignment:
| Q |
55 |
tttgacataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggactagctaggctttgtcctacagataaaagcattg |
154 |
Q |
| |
|
||||||||||||||||||||||| |||||||| | ||| |||| |||||| ||||| |||||| ||||||| | | | | ||| || || || ||||||| |
|
|
| T |
9488784 |
tttgacataaagcctcataacattcttcttgacgtaaacttcactccaaaggtttcagattttagactagcaaagttatatccaacggacaatagcattg |
9488685 |
T |
|
| Q |
155 |
ttacattaactgcagcaagaggaaccattggatacatggcccctgaactattctaccgaaatgtcggcacga-tatcttacaaagctgatgtttatagtt |
253 |
Q |
| |
|
| | | || || ||||||||||| || ||||||||||| || ||| | ||||| ||| | || | || |||| |||||||| ||||||||||| | |
|
|
| T |
9488684 |
tgtctcttacagctgcaagaggaactatgggatacatggcaccagaattgttctataagaatattgg-aggagtatcgtacaaagcagatgtttatagct |
9488586 |
T |
|
| Q |
254 |
ttgggatgttgttaatggagatggc |
278 |
Q |
| |
|
|||| |||||||||||||| ||||| |
|
|
| T |
9488585 |
ttggaatgttgttaatggaaatggc |
9488561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 55 - 125
Target Start/End: Complemental strand, 9464352 - 9464282
Alignment:
| Q |
55 |
tttgacataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggactagc |
125 |
Q |
| |
|
||||||||||||||||||||||| |||||||| | ||| |||| |||||| ||||| |||||| ||||||| |
|
|
| T |
9464352 |
tttgacataaagcctcataacattcttcttgacgtaaacttcactccaaaggtttcggatttttgactagc |
9464282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 55 - 194
Target Start/End: Original strand, 8873944 - 8874083
Alignment:
| Q |
55 |
tttgacataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggactagctaggctttgtcctacagataaaagcattg |
154 |
Q |
| |
|
||||| || |||||||| ||||||||||||||||| || || | ||| ||||| ||||| |||||| | |||| ||| | |||| || || ||||||| |
|
|
| T |
8873944 |
tttgatattaagcctcacaacatccttcttgatgagaactttactccgaaagtctctgactttggattggctaagctatatcctgtggagaatagcattg |
8874043 |
T |
|
| Q |
155 |
ttacattaactgcagcaagaggaaccattggatacatggc |
194 |
Q |
| |
|
| ||| | ||||| |||||||| ||||||||||| ||||| |
|
|
| T |
8874044 |
tcacaatgactgcggcaagaggtaccattggatatatggc |
8874083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 221
Target Start/End: Original strand, 9486065 - 9486231
Alignment:
| Q |
55 |
tttgacataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggactagctaggctttgtcctacagataaaagcattg |
154 |
Q |
| |
|
||||| || |||||||| ||||| |||||||| |||||||| || |||||||| || ||||| || || | ||||| ||||| || |||||||||| |
|
|
| T |
9486065 |
tttgatattaagcctcacaacattcttcttgacgaaaattttgtccctaaagtttcggactttggtcttgcaaagctttatcctattgacaaaagcattg |
9486164 |
T |
|
| Q |
155 |
ttacattaactgcagcaagaggaaccattggatacatggcccctgaactattctaccgaaatgtcgg |
221 |
Q |
| |
|
|| || || |||||||||||||| || || |||||||| |||||| | ||||||| |||| |||| |
|
|
| T |
9486165 |
ccaccttgacagcagcaagaggaacaatcggttacatggctcctgaattgttctaccaaaatatcgg |
9486231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 163 - 280
Target Start/End: Original strand, 9082523 - 9082640
Alignment:
| Q |
163 |
actgcagcaagaggaaccattggatacatggcccctgaactattctaccgaaatgtcggcacgatatcttacaaagctgatgtttatagttttgggatgt |
262 |
Q |
| |
|
|||||||||||||| || |||||||| ||||| ||||| |||||||| |||| | || | || ||||| |||||||||||||||||||||||| |
|
|
| T |
9082523 |
actgcagcaagaggtacaattggatatatggctcctgagttattctacaaaaatatagggggagtgtcgtacaaggctgatgtttatagttttgggatgc |
9082622 |
T |
|
| Q |
263 |
tgttaatggagatggcaa |
280 |
Q |
| |
|
| || ||||||||||||| |
|
|
| T |
9082623 |
ttttgatggagatggcaa |
9082640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 122
Target Start/End: Original strand, 9233918 - 9234002
Alignment:
| Q |
38 |
atatgaaaattctacactttgacataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggact |
122 |
Q |
| |
|
||||| |||||||||| ||||| || ||||||||||| || ||||| || ||| ||||| |||||| ||||| ||||||||||| |
|
|
| T |
9233918 |
atatgcaaattctacattttgatatcaagcctcataatattcttctagacgaagatttcgttccaaaggtttcggattttggact |
9234002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 210
Target Start/End: Complemental strand, 9384476 - 9384304
Alignment:
| Q |
38 |
atatgaaaattctacactttgacataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggactagctaggctttgtcc |
137 |
Q |
| |
|
||||| |||||||||| ||||| || ||||||||||| || ||||| || ||| | || |||||| ||||| ||||||||||| || | ||| | ||| |
|
|
| T |
9384476 |
atatgcaaattctacattttgatatcaagcctcataatattcttctagacgaagagtttgttccaaaggtttcggattttggacttgcaaagctatatcc |
9384377 |
T |
|
| Q |
138 |
tacagataaaagcattgttacattaactgcagcaagaggaaccattggatacatggcccctgaactattctac |
210 |
Q |
| |
|
| | | ||||||||||| |||||||| ||||||||||| | || |||||||| |||||||| |||||| |
|
|
| T |
9384376 |
tgtgaacgatagcattgttaccttaactgcggcaagaggaactttgggttacatggctcctgaactgttctac |
9384304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 279
Target Start/End: Original strand, 9096865 - 9096909
Alignment:
| Q |
235 |
aaagctgatgtttatagttttgggatgttgttaatggagatggca |
279 |
Q |
| |
|
||||||||||||||||| ||||||||| | || |||||||||||| |
|
|
| T |
9096865 |
aaagctgatgtttatagctttgggatgcttttgatggagatggca |
9096909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 55 - 210
Target Start/End: Original strand, 15927072 - 15927227
Alignment:
| Q |
55 |
tttgacataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggactagctaggctttgtcctacagataaaagcattg |
154 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||| || || | || |||||||| || ||||| || || | ||||| ||||| || | || |||| |
|
|
| T |
15927072 |
tttgacatcaagccccataacatccttcttgatgagaactttatccccaaagtttccgactttggtcttgcaaagctttatcctaatgagattagtattg |
15927171 |
T |
|
| Q |
155 |
ttacattaactgcagcaagaggaaccattggatacatggcccctgaactattctac |
210 |
Q |
| |
|
| || |||||||||||||||||||| |||||||||||||| |||||| |||||||| |
|
|
| T |
15927172 |
tcactttaactgcagcaagaggaacgattggatacatggctcctgaattattctac |
15927227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 279
Target Start/End: Complemental strand, 27692476 - 27692430
Alignment:
| Q |
233 |
acaaagctgatgtttatagttttgggatgttgttaatggagatggca |
279 |
Q |
| |
|
||||||||||||||||||||||||| ||| || ||||||| |||||| |
|
|
| T |
27692476 |
acaaagctgatgtttatagttttggaatgatgctaatggaaatggca |
27692430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 122
Target Start/End: Complemental strand, 40225285 - 40225248
Alignment:
| Q |
85 |
gatgaaaatttcaatccaaaagtttctgattttggact |
122 |
Q |
| |
|
||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
40225285 |
gatgaaaatttcaatccaaaactctctgattttggact |
40225248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 125
Target Start/End: Original strand, 3035794 - 3035862
Alignment:
| Q |
57 |
tgacataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggactagc |
125 |
Q |
| |
|
||||||||||||||| ||||| || |||||||| | |||||| ||| | |||||||||||||| |||| |
|
|
| T |
3035794 |
tgacataaagcctcaaaacatactccttgatgattacttcaatgcaagaatttctgattttggattagc |
3035862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 125
Target Start/End: Original strand, 3056662 - 3056730
Alignment:
| Q |
57 |
tgacataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggactagc |
125 |
Q |
| |
|
||||||||||||||| ||||| || || ||||| |||||||| ||| | |||||||||||||| |||| |
|
|
| T |
3056662 |
tgacataaagcctcaaaacatactcctggatgattatttcaatgcaagaatttctgattttggattagc |
3056730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 125
Target Start/End: Complemental strand, 3070250 - 3070182
Alignment:
| Q |
57 |
tgacataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggactagc |
125 |
Q |
| |
|
||||||||||||||| ||||| || |||||||| | |||||| ||| | |||||||||||||| |||| |
|
|
| T |
3070250 |
tgacataaagcctcagaacatactccttgatgattacttcaatgcaagaatttctgattttggattagc |
3070182 |
T |
|
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