View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8427_low_15 (Length: 316)
Name: NF8427_low_15
Description: NF8427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8427_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-141; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 16 - 299
Target Start/End: Complemental strand, 6456721 - 6456437
Alignment:
| Q |
16 |
cacacgttaccatttgtaatacatacaagccagttagagaatttccaatgatatgaatcatggacacattttcagcaaaggaagaaacatcctgcacaat |
115 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6456721 |
cacacgttaccatttgtaatacatacaagccagttggagaatatccaatgatatgaatcatggacacattttcagcaaaggaagaaacatcctgcacaat |
6456622 |
T |
|
| Q |
116 |
actaacaacatcaaattcgcctttgtt-gaagcttctaaatcctaagccgcctttgtttttacctcttcctaatctgtactacctcatccaataatagat |
214 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |
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| T |
6456621 |
actaacaacatcaaatttgcctttgtttgaagcctctaaatcctaagccgcctttgtttttacctcttcccaatctgtgctacctcatccaataatagat |
6456522 |
T |
|
| Q |
215 |
atatgtaattacaagccttcacagtaacaacattttagtttgaatcaacaaatttatcaactcttccacctgcacaagatgtaac |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6456521 |
atatgtaattacaagccttcacagtaacaacattttagtttgaatcaacaaatttatcaactcttccacctgcacaagatgtaac |
6456437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 16 - 299
Target Start/End: Original strand, 6760127 - 6760410
Alignment:
| Q |
16 |
cacacgttaccatttgtaatacatacaagccagttagagaatttccaatgatatgaatcatggacacattttcagcaaaggaagaaacatcctgcacaat |
115 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6760127 |
cacacgttgccatttgtaatacatacaagccagttggagaatatccaatgatatgaatcatggacacattttcagcaaaggaagaaacatcctgcacaat |
6760226 |
T |
|
| Q |
116 |
actaacaacatcaaattcgcctttgttgaagcttctaaatcctaagccgcctttgtttttacctcttcctaatctgtactacctcatccaataatagata |
215 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||| |
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| T |
6760227 |
actaacaacatcaaatttgcctttgttgaagcctctaaatcctaagccgcctttatttttacctcttcccaatctgtgctacctcatccaataatagata |
6760326 |
T |
|
| Q |
216 |
tatgtaattacaagccttcacagtaacaacattttagtttgaatcaacaaatttatcaactcttccacctgcacaagatgtaac |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6760327 |
tatgtaattacaagccttcacagtaacaacattttagtttgaatcaacaaatttatcaactcttccacctgcacaagatgtaac |
6760410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 149 - 257
Target Start/End: Complemental strand, 407136 - 407026
Alignment:
| Q |
149 |
tctaaatcctaagccgcctttgtttttacctcttcctaatctgtactacctcatccaataatagatatatgtaattacaagcctt--cacagtaacaaca |
246 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| ||||||| | | ||| |||||||||| ||||||||||||||||||||| ||||||||||| | |
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|
| T |
407136 |
tctaaatcctaagccacctttgtttttacctcttcccaatctgtcccagctcgtccaataatacatatatgtaattacaagccttcacacagtaacaata |
407037 |
T |
|
| Q |
247 |
ttttagtttga |
257 |
Q |
| |
|
||| ||||||| |
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|
| T |
407036 |
tttcagtttga |
407026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 149 - 257
Target Start/End: Original strand, 416806 - 416916
Alignment:
| Q |
149 |
tctaaatcctaagccgcctttgtttttacctcttcctaatctgtactacctcatccaataatagatatatgtaattacaagcctt--cacagtaacaaca |
246 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| ||||||| | | ||| |||||||||| ||||||||||||||||||||| ||||||||||| | |
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|
| T |
416806 |
tctaaatcctaagccacctttgtttttacctcttcccaatctgtcccagctcgtccaataatacatatatgtaattacaagccttcacacagtaacaata |
416905 |
T |
|
| Q |
247 |
ttttagtttga |
257 |
Q |
| |
|
||| ||||||| |
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|
| T |
416906 |
tttcagtttga |
416916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 64
Target Start/End: Original strand, 49963835 - 49963873
Alignment:
| Q |
26 |
catttgtaatacatacaagccagttagagaatttccaat |
64 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||||| |
|
|
| T |
49963835 |
catttgtaatacatacaagccagttggagaatatccaat |
49963873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 20 - 299
Target Start/End: Complemental strand, 39676348 - 39676088
Alignment:
| Q |
20 |
cgttaccatttgtaatacatacaagccagttagagaatttccaatgatatgaatcatggacacattttcagcaaaggaagaaacatcctgcacaatacta |
119 |
Q |
| |
|
|||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39676348 |
cgttaccatttgcaatacatacaagccagttggagaatatccaatgatatgaatcatggatacattttcagcaaaggaagaaacatcctgcacaatacta |
39676249 |
T |
|
| Q |
120 |
acaacatcaaattcgcctttgttgaagcttctaaatcctaagccgcctttgtttttacctcttcctaatctgtactacctcatccaataatagatatatg |
219 |
Q |
| |
|
||||||| || |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||| |
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|
| T |
39676248 |
acaacat-------------------gcctctaaatcctaagccgcctttgtttttacctcttcccaatctgtcctacctcatccaataatacatatatg |
39676168 |
T |
|
| Q |
220 |
taattacaagccttcacagtaacaacattttagtttgaatcaacaaatttatcaactcttccacctgcacaagatgtaac |
299 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |
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|
| T |
39676167 |
taattacaagacttcacagtaacaacattttagtttgaatcagcaaatttatcaactcttccacatgcacaagatgtaac |
39676088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 91; Significance: 4e-44; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 100 - 265
Target Start/End: Original strand, 7276656 - 7276818
Alignment:
| Q |
100 |
aaacatcctgcacaatactaacaacatcaaattcgcctttgttgaagcttctaaatcctaagccgcctttgtttttacctcttcctaatctgtactacct |
199 |
Q |
| |
|
||||||| |||| |||||||||| ||||||||| ||||||||| |||| ||||| |||||||||||||||||||||||||||||| |||||| | || || |
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|
| T |
7276656 |
aaacatcttgcataatactaacagcatcaaattggcctttgttaaagcctctaattcctaagccgcctttgtttttacctcttccaaatctg-attagct |
7276754 |
T |
|
| Q |
200 |
catccaataatagatatatgtaattacaagccttcacagtaacaacattttagtttgaatcaacaa |
265 |
Q |
| |
|
||||||||| | | ||||||||||||||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
7276755 |
catccaata--acacatatgtaattacaagccttcagagtaacaatattttagtttgaatcaacaa |
7276818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 108 - 221
Target Start/End: Complemental strand, 4204135 - 4204022
Alignment:
| Q |
108 |
tgcacaatactaacaacatcaaattcgcctttgttgaagcttctaaatcctaagccgcctttgtttttacctcttcctaatctgtactacctcatccaat |
207 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||| ||| ||| ||| |||||||||| |
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|
| T |
4204135 |
tgcataatactaacaacatcaaattggcctttgttgaagcctctaaatcctaagctgcctttgtttttacctcttccaaatatgtcctagctcatccaat |
4204036 |
T |
|
| Q |
208 |
aatagatatatgta |
221 |
Q |
| |
|
|| | ||||||||| |
|
|
| T |
4204035 |
aacacatatatgta |
4204022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 149 - 257
Target Start/End: Original strand, 24346389 - 24346499
Alignment:
| Q |
149 |
tctaaatcctaagccgcctttgtttttacctcttcctaatctgtactacctcatccaataatagatatatgtaattacaagcctt--cacagtaacaaca |
246 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| ||||||| | | ||| |||||||||| ||||||||||||||||||||| ||||||||||| | |
|
|
| T |
24346389 |
tctaaatcctaagccacctttgtttttacctcttcccaatctgtcccagctcgtccaataatacatatatgtaattacaagccttcacacagtaacaata |
24346488 |
T |
|
| Q |
247 |
ttttagtttga |
257 |
Q |
| |
|
||| ||||||| |
|
|
| T |
24346489 |
tttcagtttga |
24346499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 149 - 257
Target Start/End: Original strand, 24358661 - 24358771
Alignment:
| Q |
149 |
tctaaatcctaagccgcctttgtttttacctcttcctaatctgtactacctcatccaataatagatatatgtaattacaagcctt--cacagtaacaaca |
246 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| ||||||| | | ||| |||||||||| ||||||||||||||||||||| ||||||||||| | |
|
|
| T |
24358661 |
tctaaatcctaagccacctttgtttttacctcttcccaatctgtcccagctcgtccaataatacatatatgtaattacaagccttcacacagtaacaata |
24358760 |
T |
|
| Q |
247 |
ttttagtttga |
257 |
Q |
| |
|
||| ||||||| |
|
|
| T |
24358761 |
tttcagtttga |
24358771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 214 - 265
Target Start/End: Complemental strand, 4203735 - 4203684
Alignment:
| Q |
214 |
tatatgtaattacaagccttcacagtaacaacattttagtttgaatcaacaa |
265 |
Q |
| |
|
|||||||||||||||||||||| |||||||| |||||| ||||||||||||| |
|
|
| T |
4203735 |
tatatgtaattacaagccttcagagtaacaatattttaatttgaatcaacaa |
4203684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 149 - 257
Target Start/End: Complemental strand, 24183619 - 24183509
Alignment:
| Q |
149 |
tctaaatcctaagccgcctttgtttttacctcttcctaatctgtactacctcatccaataatagatatatgtaattacaagcctt--cacagtaacaaca |
246 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| ||||||| | | ||| |||||||||| ||||||||||||||||||||| ||||||||||| | |
|
|
| T |
24183619 |
tctaaatcctaagccacctttgtttttacctcttcccaatctgtcccagctcgtccaataatacatatatgtaattacaagccttcacacagtaacaata |
24183520 |
T |
|
| Q |
247 |
ttttagtttga |
257 |
Q |
| |
|
||| ||||||| |
|
|
| T |
24183519 |
tttcagtttga |
24183509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 144 - 208
Target Start/End: Original strand, 7197006 - 7197070
Alignment:
| Q |
144 |
aagcttctaaatcctaagccgcctttgtttttacctcttcctaatctgtactacctcatccaata |
208 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| ||||||| | | ||||||||||| |
|
|
| T |
7197006 |
aagcctctaaatcctaagccgcctttgtttttacctcttcccaatctgtcccagctcatccaata |
7197070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 116
Target Start/End: Complemental strand, 15046267 - 15046237
Alignment:
| Q |
86 |
ttcagcaaaggaagaaacatcctgcacaata |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
15046267 |
ttcagcaaaggaagaaacatcctgcacaata |
15046237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 64
Target Start/End: Complemental strand, 38175148 - 38175107
Alignment:
| Q |
23 |
taccatttgtaatacatacaagccagttagagaatttccaat |
64 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||||| |||||| |
|
|
| T |
38175148 |
taccatttgtaatacatacaagtcagttggagaatatccaat |
38175107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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