View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8427_low_19 (Length: 286)
Name: NF8427_low_19
Description: NF8427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8427_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 9 - 271
Target Start/End: Original strand, 2688566 - 2688835
Alignment:
| Q |
9 |
gacatcataatcatgtgaataatctgtgtggagaagataagtaggacagatattttgattcattttttataaagcactggagacgatactgacactggat |
108 |
Q |
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| T |
2688566 |
gacatcataatcatgtgaataatctgtgtggagaagataagtaggacagatattttgattcattttttatatagcactggagacgatactgacactggat |
2688665 |
T |
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| Q |
109 |
acgagattgacacgtagacacataataatttgagaaaatggaacgcattccatgaaactttattgtgttggtatcatgttggtgtttgacgcaagtcaga |
208 |
Q |
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| T |
2688666 |
acgagattgacacgtagacacataataatttgagaaaatggaacgcattccatgaaactatattgtgttggtatcatgttggtgtttgacgcaagtcaga |
2688765 |
T |
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| Q |
209 |
caccaaacataccttc-------actgttggtgttacatagctcatttgtccaccaaatgttttattttg |
271 |
Q |
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| T |
2688766 |
caccaaacataccttcaatctgaactgtcggtgttacatagctcatttgtccaccaaatgttttattttg |
2688835 |
T |
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