View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8427_low_2 (Length: 579)
Name: NF8427_low_2
Description: NF8427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8427_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 402; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 17 - 498
Target Start/End: Original strand, 27062496 - 27062975
Alignment:
| Q |
17 |
gacagaatctattttccaacaaacaatttgcgaagagattttgtgtttgaatgcaaacaacgttgttgtcggagaagatttttctgtcgacgacttgctt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27062496 |
gacagaatctattttccaacaaacaatttgcgaagagattttgtgtttgaatgcaaacaacgttgttgtcggagaagatttttctgtcgacgacttgctt |
27062595 |
T |
|
| Q |
117 |
gatttttccaacggtgaatttcagcatggttctgtcggaaaagaagttgatgtttgcgaggaagaagaagaggaagaacatgagaaaaacagcaccacct |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27062596 |
gatttttccaacggtgaatttcagcatggttctgtcggaaaagaagttgatgtttgcgaggaagaagaagaggaagaacatgagaaaaacagcaccacct |
27062695 |
T |
|
| Q |
217 |
ccggttctgaacatgaacgaacagaagatgacgacaattcaaattccacaacattttccggcgccggagacggcgagtctaactccatttttgccagtgg |
316 |
Q |
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| T |
27062696 |
ccggttctgaacatgaacgaaccgaagatgacgacaattcaaattccacaacattttccggcgccggagacggcgagtctaactccatttttgccggtgg |
27062795 |
T |
|
| Q |
317 |
tttagcagttccggtgagtctttaatcatgcaataaattannnnnnnnnnnnatttaataaagaatgaattcattacctttgtagcataaacatttcatg |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
27062796 |
tttagcagttccggtgagtctttaatcatgcaataaattatttttgttttttatttaataaagaatgaattcattacctttgtagcataaaca--tcatg |
27062893 |
T |
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| Q |
417 |
tgctaatatccgacacatgtcactgacacaacacgtttgattacattgaattatgttannnnnnncatattattattagtat |
498 |
Q |
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| T |
27062894 |
tgctaatatctgacacatgtcactgacacaacacgtttgattacattgaattatgttatttttttcatattattattagtat |
27062975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 17 - 473
Target Start/End: Original strand, 27083601 - 27084055
Alignment:
| Q |
17 |
gacagaatctattttccaacaaacaatttgcgaagagattttgtgtttgaatgcaaacaacgttgttgtcggagaagatttttctgtcgacgacttgctt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27083601 |
gacagaatctattttccaacaaacaatttgcgaagagattttgtgtttgaatgcaaacaacgttgttgtcggagaagatttttctgtcgacgacttgctt |
27083700 |
T |
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| Q |
117 |
gatttttccaacggtgaatttcagcatggttctgtcggaaaagaagttgatgtttgcgaggaagaagaagaggaagaacatgagaaaaacagcaccacct |
216 |
Q |
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| T |
27083701 |
gatttttccaacggtgaatttcagcatggttctgtcggaaaagaagttgatgtttgcgaggaagaagaagaggaagaacatgagaaaaacagcaccacct |
27083800 |
T |
|
| Q |
217 |
ccggttctgaacatgaacgaacagaagatgacgacaattcaaattccacaacattttccggcgccggagacggcgagtctaactccatttttgccagtgg |
316 |
Q |
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| T |
27083801 |
ccggttctgaacatgaacgaaccgaagatgacgacaattcaaattccacaacattttccggcgccggagacggcgagtctaactccatttttgccggtgg |
27083900 |
T |
|
| Q |
317 |
tttagcagttccggtgagtctttaatcatgcaataaattannnnnnnnnnnnatttaataaagaatgaattcattacctttgtagcataaacatttcatg |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
27083901 |
tttagcagttccggtgagtctttaatcatgcaataaattatttttgttttttatttaataaagaatgaattcattacctttgtagcataaaca--tcatg |
27083998 |
T |
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| Q |
417 |
tgctaatatccgacacatgtcactgacacaacacgtttgattacattgaattatgtt |
473 |
Q |
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| T |
27083999 |
tgctaatatctgacacatgtcactgacacaacacgtttgattacattgaattatgtt |
27084055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 537 - 568
Target Start/End: Original strand, 27063009 - 27063040
Alignment:
| Q |
537 |
cttcatagctaacaactcgttttggttttctt |
568 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
27063009 |
cttcatagctaacaactcgttttggttttctt |
27063040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 537 - 568
Target Start/End: Original strand, 27084115 - 27084146
Alignment:
| Q |
537 |
cttcatagctaacaactcgttttggttttctt |
568 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
27084115 |
cttcatagctaacaactcgttttggttttctt |
27084146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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