View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8427_low_20 (Length: 276)

Name: NF8427_low_20
Description: NF8427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8427_low_20
NF8427_low_20
[»] scaffold0021 (9 HSPs)
scaffold0021 (19-267)||(95341-95589)
scaffold0021 (19-264)||(48741-48988)
scaffold0021 (21-264)||(49813-50055)
scaffold0021 (19-268)||(50951-51200)
scaffold0021 (20-264)||(35070-35314)
scaffold0021 (19-248)||(40271-40500)
scaffold0021 (19-264)||(38805-39050)
scaffold0021 (19-56)||(39873-39910)
scaffold0021 (29-62)||(34484-34517)
[»] scaffold0055 (16 HSPs)
scaffold0055 (19-264)||(55464-55711)
scaffold0055 (19-264)||(20022-20269)
scaffold0055 (19-264)||(42750-42997)
scaffold0055 (19-264)||(74136-74383)
scaffold0055 (19-268)||(11643-11892)
scaffold0055 (19-232)||(19016-19229)
scaffold0055 (19-232)||(36117-36330)
scaffold0055 (19-232)||(56504-56717)
scaffold0055 (20-232)||(43779-43991)
scaffold0055 (19-232)||(75165-75378)
scaffold0055 (20-232)||(53121-53333)
scaffold0055 (49-232)||(33978-34161)
scaffold0055 (41-232)||(35094-35285)
scaffold0055 (19-119)||(3762-3863)
scaffold0055 (163-268)||(3650-3755)
scaffold0055 (219-264)||(29972-30017)
[»] scaffold0052 (14 HSPs)
scaffold0052 (19-264)||(41920-42167)
scaffold0052 (19-264)||(53070-53317)
scaffold0052 (19-264)||(3904-4151)
scaffold0052 (19-264)||(29861-30108)
scaffold0052 (19-268)||(72643-72892)
scaffold0052 (19-232)||(2898-3111)
scaffold0052 (19-232)||(17434-17647)
scaffold0052 (19-232)||(40914-41127)
scaffold0052 (19-232)||(54108-54321)
scaffold0052 (49-232)||(61903-62086)
scaffold0052 (19-119)||(80672-80773)
scaffold0052 (180-264)||(18429-18512)
scaffold0052 (163-268)||(80780-80885)
scaffold0052 (219-264)||(66048-66093)
[»] scaffold0515 (3 HSPs)
scaffold0515 (36-264)||(11967-12195)
scaffold0515 (27-248)||(10936-11158)
scaffold0515 (219-264)||(10607-10652)
[»] scaffold0152 (9 HSPs)
scaffold0152 (36-264)||(32947-33175)
scaffold0152 (36-264)||(38363-38591)
scaffold0152 (36-264)||(19537-19764)
scaffold0152 (27-248)||(37332-37554)
scaffold0152 (27-248)||(18506-18728)
scaffold0152 (19-143)||(33977-34101)
scaffold0152 (219-264)||(18175-18220)
scaffold0152 (219-264)||(28227-28272)
scaffold0152 (219-264)||(37003-37048)
[»] chr6 (15 HSPs)
chr6 (19-264)||(9476998-9477249)
chr6 (91-248)||(9487882-9488043)
chr6 (67-264)||(9487679-9487877)
chr6 (101-239)||(12776549-12776687)
chr6 (162-239)||(22019049-22019126)
chr6 (163-239)||(9904036-9904112)
chr6 (19-73)||(9487425-9487479)
chr6 (162-239)||(33202808-33202885)
chr6 (168-239)||(26838471-26838542)
chr6 (158-236)||(4221963-4222041)
chr6 (176-226)||(9491012-9491062)
chr6 (179-236)||(9904373-9904430)
chr6 (177-226)||(21556487-21556536)
chr6 (115-239)||(4222275-4222399)
chr6 (180-248)||(25915170-25915238)
[»] chr2 (13 HSPs)
chr2 (19-130)||(4470805-4470916)
chr2 (101-239)||(10601583-10601721)
chr2 (162-239)||(44329157-44329234)
chr2 (137-239)||(36583927-36584029)
chr2 (148-239)||(40440146-40440239)
chr2 (162-239)||(44655956-44656033)
chr2 (168-239)||(6172679-6172750)
chr2 (158-236)||(15629590-15629668)
chr2 (101-239)||(15629887-15630025)
chr2 (158-226)||(31298521-31298589)
chr2 (162-239)||(31298209-31298286)
chr2 (177-226)||(37621788-37621837)
chr2 (158-226)||(6172376-6172444)
[»] chr8 (18 HSPs)
chr8 (23-165)||(22623897-22624039)
chr8 (162-239)||(8815948-8816025)
chr8 (101-239)||(21543505-21543644)
chr8 (101-239)||(42001119-42001257)
chr8 (162-239)||(2808965-2809042)
chr8 (105-226)||(24536192-24536314)
chr8 (137-239)||(27642050-27642152)
chr8 (176-264)||(24535843-24535931)
chr8 (105-226)||(24536614-24536737)
chr8 (101-226)||(28991774-28991895)
chr8 (137-248)||(28992127-28992240)
chr8 (148-226)||(35588319-35588397)
chr8 (136-226)||(28427931-28428020)
chr8 (185-231)||(22623849-22623895)
chr8 (158-226)||(27642375-27642442)
chr8 (158-226)||(42001499-42001567)
chr8 (115-236)||(8816218-8816339)
chr8 (180-248)||(3152949-3153017)
[»] chr5 (21 HSPs)
chr5 (101-239)||(8213762-8213900)
chr5 (121-248)||(30471053-30471179)
chr5 (101-239)||(12936898-12937036)
chr5 (101-239)||(12951061-12951199)
chr5 (105-231)||(28108852-28108978)
chr5 (137-239)||(17646116-17646218)
chr5 (104-239)||(41473140-41473275)
chr5 (162-239)||(2898546-2898623)
chr5 (103-239)||(27809061-27809196)
chr5 (171-246)||(42056926-42057001)
chr5 (174-248)||(28109250-28109324)
chr5 (101-248)||(42036101-42036249)
chr5 (148-226)||(12936594-12936673)
chr5 (162-236)||(2898278-2898352)
chr5 (178-239)||(16930620-16930681)
chr5 (162-226)||(22965004-22965068)
chr5 (105-226)||(31064711-31064827)
chr5 (162-226)||(42057235-42057299)
chr5 (179-226)||(12950749-12950796)
chr5 (179-226)||(21038320-21038367)
chr5 (162-226)||(16930929-16930994)
[»] chr1 (13 HSPs)
chr1 (53-264)||(5865614-5865824)
chr1 (101-239)||(7998693-7998831)
chr1 (101-248)||(51936030-51936177)
chr1 (105-224)||(11346778-11346896)
chr1 (158-236)||(48899203-48899281)
chr1 (162-226)||(51935728-51935792)
chr1 (135-239)||(31106518-31106619)
chr1 (178-239)||(34815128-34815189)
chr1 (158-226)||(7999067-7999135)
chr1 (174-226)||(34814819-34814871)
chr1 (177-236)||(47357150-47357209)
chr1 (101-175)||(6131579-6131653)
chr1 (162-231)||(34089498-34089567)
[»] chr4 (23 HSPs)
chr4 (137-239)||(11014953-11015055)
chr4 (101-239)||(33437090-33437227)
chr4 (157-239)||(41534640-41534722)
chr4 (162-239)||(9617860-9617937)
chr4 (162-239)||(35143368-35143445)
chr4 (162-239)||(40731892-40731969)
chr4 (162-239)||(50910843-50910920)
chr4 (137-233)||(38193892-38193988)
chr4 (138-226)||(42577237-42577325)
chr4 (105-239)||(35218545-35218678)
chr4 (158-239)||(33436777-33436858)
chr4 (180-248)||(2265942-2266010)
chr4 (158-226)||(50910532-50910600)
chr4 (162-236)||(9617534-9617608)
chr4 (101-239)||(31433213-31433351)
chr4 (162-236)||(35143693-35143767)
chr4 (158-236)||(40731579-40731657)
chr4 (156-226)||(45841686-45841756)
chr4 (179-236)||(11014630-11014687)
chr4 (162-235)||(38194246-38194319)
chr4 (105-248)||(35218227-35218363)
chr4 (174-236)||(31432903-31432965)
chr4 (174-236)||(52074358-52074420)
[»] chr3 (15 HSPs)
chr3 (162-239)||(47641610-47641687)
chr3 (105-239)||(11434219-11434352)
chr3 (162-239)||(37526144-37526221)
chr3 (115-236)||(54921702-54921823)
chr3 (162-239)||(54922015-54922092)
chr3 (105-244)||(4811724-4811864)
chr3 (158-236)||(47641291-47641369)
chr3 (104-232)||(45266096-45266225)
chr3 (101-239)||(17074131-17074269)
chr3 (109-234)||(26267757-26267885)
chr3 (105-231)||(37525449-37525574)
chr3 (158-226)||(48097679-48097747)
chr3 (162-236)||(45265766-45265840)
chr3 (177-226)||(40368623-40368672)
chr3 (180-248)||(314291-314359)
[»] scaffold0004 (1 HSPs)
scaffold0004 (162-232)||(127746-127816)
[»] chr7 (13 HSPs)
chr7 (137-239)||(48556344-48556446)
chr7 (101-246)||(31602225-31602370)
chr7 (100-226)||(25694547-25694673)
chr7 (162-239)||(47610546-47610623)
chr7 (136-225)||(47610845-47610934)
chr7 (174-248)||(25694939-25695013)
chr7 (105-248)||(35248564-35248707)
chr7 (158-226)||(31602608-31602676)
chr7 (168-226)||(14815656-14815714)
chr7 (168-226)||(15262651-15262709)
chr7 (138-200)||(25609417-25609478)
chr7 (178-215)||(22929163-22929200)
chr7 (180-228)||(12224332-12224380)


Alignment Details
Target: scaffold0021 (Bit Score: 221; Significance: 1e-121; HSPs: 9)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 19 - 267
Target Start/End: Original strand, 95341 - 95589
Alignment:
Q  19 aggtgctccccctatatatgcttgatgtgccatttccaattttgtagaaaaaggggttaaatttccctgcaggcataaagtcccgaaaaagtgacttaga 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||    
T  95341 aggtgctccccctatatatgcttgatgtgccatttccaattttgtagaaaaaagtgttaaatttccctgcaggcataaagtcccgaaaaagtgacttaga 95440  T
Q  119 gattgaatttttccgcgattttttgcaggcatgttagggacataaaaacaacatctcccacaaaaaattagaattttccgacgagggacggattaaatat 218  Q
    | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  95441 ggttgaatttttccgcgattttttgcaggcatgttaggaacataaaaacaacatctcccactaaaaattagaattttccgacaagggacggattaaatat 95540  T
Q  219 gaattttttacgcgccaaaaagtaaagaaagcgtgacatcaaaacacca 267  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  95541 gaattttttactcgccaaaaagtaaagaaagcgtgacatcaaaacacca 95589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 19 - 264
Target Start/End: Original strand, 48741 - 48988
Alignment:
Q  19 aggtgctccccctatatatgcttgatgtgccatttccaattttgtagaaaaaggggttaaatttccctgcaggcataaagtcccgaaaaagtgacttaga 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||| |||    
T  48741 aggtgctccccctatatatgcttgatgtgccatttccaattttgtagaaaaaagggtgaattttccctgcaggcataaagtcccgaaaaagtgactcaga 48840  T
Q  119 gattgaatttttccgcga-ttttttgcaggcatgttagggacataaaaacaacatctcccac-aaaaaattagaattttccgacgagggacggattaaat 216  Q
    | |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  48841 ggttgaatttgtccgcgatttttttgcaggcatgttagggacataaaaacaacatctcccacaaaaaaattagaattttccgacgagggacggattaaat 48940  T
Q  217 atgaattttttacgcgccaaaaagtaaagaaagcgtgacatcaaaaca 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  48941 atgaattttttacgcgccaaaaagtaaagaaagcgtgacatcaaaaca 48988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 21 - 264
Target Start/End: Original strand, 49813 - 50055
Alignment:
Q  21 gtgctccccctatatatgcttgatgtgccatttccaattttgtagaaaaaggggttaaatttccctgcaggcataaagtcccgaaaaagtgacttagaga 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | || ||  ||||||||||||||||||| |||||||||||||||||||     
T  49813 gtgctccccctatatatgcttgatgtgccatttccaattttgtagaaaaatgtgtgaatattccctgcaggcataaagttccgaaaaagtgacttagagt 49912  T
Q  121 ttgaatttttccgcgattttttgcaggcatgttagggacataaaaacaacatctcccacaaaaaattagaattttccgacgagggacggattaaatatga 220  Q
    ||||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49913 ttgaatttttccgggatttt-tgcaggcatgttaggtacataaaaacaacatctcccacaaaaaattagaattttccgacgagggacggattaaatatga 50011  T
Q  221 attttttacgcgccaaaaagtaaagaaagcgtgacatcaaaaca 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  50012 attttttacgcgccaaaaagtaaagaaagcgtgacatcaaaaca 50055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #4
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 19 - 268
Target Start/End: Original strand, 50951 - 51200
Alignment:
Q  19 aggtgctccccctatatatgcttgatgtgccatttccaattttgtagaaaaaggggttaaatttccctgcaggcataaagtcccgaaaaagtgacttaga 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||    
T  50951 aggtgctccccctatatatgcttgatgtgccatttccaattttgtagaaaaaggggttaaatttccctgcaggcataaagtcctgaaaaattgacttaga 51050  T
Q  119 gattgaatttttccgcgattttttgcaggcatgttagggacataaaaacaacatctcccacaaaaaattagaattttccgacgagggacggattaaatat 218  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  51051 gattgaatttttccgcgagcttttgcaggcatgttagggacataaaaacaacatctcccgcaaaaaattagaattttccgacgagggacggatcaaatat 51150  T
Q  219 gaattttttacgcgccaaaaagtaaagaaagcgtgacatcaaaacaccaa 268  Q
    |||||||||||||| |||||| | |||||| || |  |||||||||||||    
T  51151 gaattttttacgcgtcaaaaactcaagaaaccgaggaatcaaaacaccaa 51200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #5
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 20 - 264
Target Start/End: Original strand, 35070 - 35314
Alignment:
Q  20 ggtgctccccctatatatgcttgatgtgccatttccaattttgtagaaaaaggggttaaatttccctgcaggcataaagtcccgaaaaagtgacttagag 119  Q
    ||||||||||||||| ||||||||||||||||| ||||||||||||||||| | || || ||||||||||||||||||||||||||||| | |||||||     
T  35070 ggtgctccccctatacatgcttgatgtgccattcccaattttgtagaaaaatgtgtgaattttccctgcaggcataaagtcccgaaaaactaacttagat 35169  T
Q  120 attgaatttttccgcgattttttgcaggcatgttagggacataaaaacaacatctcccacaaaaaattagaattttccgacgagggacggattaaatatg 219  Q
     |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  35170 gttgaatttttccacgattttttgcaggcatgttagggacataaaaacaacatctcccacaaagaattagaattttccgacgagggacggattaaatatg 35269  T
Q  220 aattttttacgcgccaaaaagtaaagaaagcgtgacatcaaaaca 264  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  35270 aattttttacgcgccaaaaagtaaagaaagcgtgacatcaaaaca 35314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #6
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 19 - 248
Target Start/End: Original strand, 40271 - 40500
Alignment:
Q  19 aggtgctccccctatatatgcttgatgtgccatttccaattttgtagaaaaaggggttaaatttccctgcaggcataaagtcccgaaaaagtgacttaga 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |    
T  40271 aggtgctccccctatatatgcttgatgtgccatttccaattttgtagaaaaaagtgttaaatttccctgcaggcataaagtcccgaaaaagtgacttaca 40370  T
Q  119 gattgaatttttccgcgattttttgcaggcatgttagggacataaaaacaacatctcccacaaaaaattagaattttccgacgagggacggattaaatat 218  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  40371 ggttgaatttttccgcgattttttgcaggcatgttagggacataaaaacaacatctcccacaaaaaattagaattttccgacgagggacggatcaaatat 40470  T
Q  219 gaattttttacgcgccaaaaagtaaagaaa 248  Q
    || ||||||||||| |||||| | ||||||    
T  40471 gatttttttacgcgtcaaaaactcaagaaa 40500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #7
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 19 - 264
Target Start/End: Original strand, 38805 - 39050
Alignment:
Q  19 aggtgctccccctatatatgcttgatgtgccatttccaattttgtagaaaaaggggttaaatttccctgcaggcataaagtcccgaaaaagtgacttaga 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| | || || |||||||||||||||||||||||| ||||||||||||||    
T  38805 aggtgctccccctatatatgcttgatgtgccatttccaattttgtagaaaaatgtgtgaattttccctgcaggcataaagtcccgtaaaagtgacttaga 38904  T
Q  119 gattgaatttttccgcgattttttgcaggcatgttagggacataaaaacaacatctcccacaaaaaattagaattttccgacgagggacggattaaatat 218  Q
    | || |||||||| | | ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  38905 ggtttaatttttctgggttttttagcaggcatgttagggacataaaaaaaacatctcccacaaaaaattagaattttccgacgaggaatggattaaatat 39004  T
Q  219 gaattttttacgcgccaaaaagtaaagaaagcgtgacatcaaaaca 264  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||    
T  39005 gaattttttccgcgccaaaaagtaaagaaagcgtgacatcaaaaca 39050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 39873 - 39910
Alignment:
Q  19 aggtgctccccctatatatgcttgatgtgccatttcca 56  Q
    ||||||||||||||||||||||||||||||||||||||    
T  39873 aggtgctccccctatatatgcttgatgtgccatttcca 39910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 62
Target Start/End: Original strand, 34484 - 34517
Alignment:
Q  29 cctatatatgcttgatgtgccatttccaattttg 62  Q
    ||||||||||||||||||||||||||||||||||    
T  34484 cctatatatgcttgatgtgccatttccaattttg 34517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055 (Bit Score: 212; Significance: 1e-116; HSPs: 16)
Name: scaffold0055
Description:

Target: scaffold0055; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 19 - 264
Target Start/End: Original strand, 55464 - 55711
Alignment:
Q  19 aggtgctccccctatatatgcttgatgtgccatttccaattttgtagaaaaaggggttaaatttccctgcaggcataaagtcccgaaaaagtgacttaga 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||    
T  55464 aggtgctccccctatatatgcttgatgtgccatttccaattttgtagaaaaaagggtgaattttccctgcaggcataaagtcccgaaaaagtgacttaga 55563  T
Q  119 gattgaatttttccgcga-ttttttgcaggcatgttagggacataaaaacaacatctcccac-aaaaaattagaattttccgacgagggacggattaaat 216  Q
    | |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  55564 ggttgaatttgtccgcgatttttttgcaggcatgttagggacataaaaacaacatctcccacaaaaaaattagaattttccgacgagggacggattaaat 55663  T
Q  217 atgaattttttacgcgccaaaaagtaaagaaagcgtgacatcaaaaca 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  55664 atgaattttttacgcgccaaaaagtaaagaaagcgtgacatcaaaaca 55711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 19 - 264
Target Start/End: Complemental strand, 20269 - 20022
Alignment:
Q  19 aggtgctccccctatatatgcttgatgtgccatttccaattttgtagaaaaaggggttaaatttccctgcaggcataaagtcccgaaaaagtgacttaga 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||    
T  20269 aggtgctccccctatatatgcttgatgtgccatttccaattttgtagaaaaaagggtgaattttccctgcaggcataaagtcccgaaaaagtgacttaga 20170  T
Q  119 gattgaatttttccgcgatt-ttttgcaggcatgttagggacataaaaacaacatctcccac-aaaaaattagaattttccgacgagggacggattaaat 216  Q
    | |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  20169 ggttgaatttgtccgcgatttttttgcaggcatgttagggacataaaaacaacatctcccacaaaaaaattagaattttccaacgagggacggattaaat 20070  T
Q  217 atgaattttttacgcgccaaaaagtaaagaaagcgtgacatcaaaaca 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  20069 atgaattttttacgcgccaaaaagtaaagaaagcgtgacatcaaaaca 20022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #3
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 19 - 264
Target Start/End: Original strand, 42750 - 42997
Alignment:
Q  19 aggtgctccccctatatatgcttgatgtgccatttccaattttgtagaaaaaggggttaaatttccctgcaggcataaagtcccgaaaaagtgacttaga 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||| |||    
T  42750 aggtgctccccctatatatgcttgatgtgccatttccaattttgtagaaaaaagggtgaattttccctgcaggcataaagtcccgaaaaagtgactcaga 42849  T
Q  119 gattgaatttttccgcga-ttttttgcaggcatgttagggacataaaaacaacatctcccac-aaaaaattagaattttccgacgagggacggattaaat 216  Q
    | |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  42850 ggttgaatttgtccgcgatttttttgcaggcatgttagggacataaaaacaacatctcccacaaaaaaattagaattttccgacgagggacggattaaat 42949  T
Q  217 atgaattttttacgcgccaaaaagtaaagaaagcgtgacatcaaaaca 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  42950 atgaattttttacgcgccaaaaagtaaagaaagcgtgacatcaaaaca 42997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #4
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 19 - 264
Target Start/End: Original strand, 74136 - 74383
Alignment:
Q  19 aggtgctccccctatatatgcttgatgtgccatttccaattttgtagaaaaaggggttaaatttccctgcaggcataaagtcccgaaaaagtgacttaga 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||| |||    
T  74136 aggtgctccccctatatatgcttgatgtgccatttccaattttgtagaaaaaagggtgaattttccctgcaggcataaagtcccgaaaaagtgactcaga 74235  T
Q  119 gattgaatttttccgcga-ttttttgcaggcatgttagggacataaaaacaacatctcccac-aaaaaattagaattttccgacgagggacggattaaat 216  Q
    | |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||    
T  74236 ggttgaatttgtccgcgatttttttgcaggcatgttagggacataaaaacaacatctcccacaaaaaaattagaatttttcgacgagggacggattaaat 74335  T
Q  217 atgaattttttacgcgccaaaaagtaaagaaagcgtgacatcaaaaca 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  74336 atgaattttttacgcgccaaaaagtaaagaaagcgtgacatcaaaaca 74383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #5
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 19 - 268
Target Start/End: Complemental strand, 11892 - 11643
Alignment:
Q  19 aggtgctccccctatatatgcttgatgtgccatttccaattttgtagaaaaaggggttaaatttccctgcaggcataaagtcccgaaaaagtgacttaga 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||    
T  11892 aggtgctccccctatatatgcttgatgtgccatttccaattttgtagaaaaaggggttaaatttccctgcaggcataaagtcctgaaaaattgacttaga 11793  T
Q  119 gattgaatttttccgcgattttttgcaggcatgttagggacataaaaacaacatctcccacaaaaaattagaattttccgacgagggacggattaaatat 218  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  11792 gattgaatttttccgcgagcttttgcaggcatgttagggacataaaaacaacatctcccgcaaaaaattagaattttccgacgagggacggatcaaatat 11693  T
Q  219 gaattttttacgcgccaaaaagtaaagaaagcgtgacatcaaaacaccaa 268  Q
    |||||||||||||| |||||| | |||||| || |  |||||||||||||    
T  11692 gaattttttacgcgtcaaaaactcaagaaaccgaggaatcaaaacaccaa 11643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #6
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 19 - 232
Target Start/End: Complemental strand, 19229 - 19016
Alignment:
Q  19 aggtgctccccctatatatgcttgatgtgccatttccaattttgtagaaaaaggggttaaatttccctgcaggcataaagtcccgaaaaagtgacttaga 118  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| || |||||||||||||||||||||||||||||||||| ||||    
T  19229 aggtgctccccctatatatgcttgatgtgccatttccagttttgtagaaaaatgggtgaattttccctgcaggcataaagtcccgaaaaagtgacctaga 19130  T
Q  119 gattgaatttttccgcgattttttgcaggcatgttagggacataaaaacaacatctcccacaaaaaattagaattttccgacgagggacggattaaatat 218  Q
    | |||||||||| | ||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  19129 ggttgaattttttcacgattttttccaggcatgttaggggcataaaaacaacatctcacacaaaaaattagaattttccgacgagggacggattaaatat 19030  T
Q  219 gaattttttacgcg 232  Q
    ||||||||||||||    
T  19029 gaattttttacgcg 19016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #7
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 19 - 232
Target Start/End: Original strand, 36117 - 36330
Alignment:
Q  19 aggtgctccccctatatatgcttgatgtgccatttccaattttgtagaaaaaggggttaaatttccctgcaggcataaagtcccgaaaaagtgacttaga 118  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| || |||||||||||||||||||||||||||||||||| ||||    
T  36117 aggtgctccccctatatatgcttgatgtgccatttccagttttgtagaaaaatgggtgaattttccctgcaggcataaagtcccgaaaaagtgacctaga 36216  T
Q  119 gattgaatttttccgcgattttttgcaggcatgttagggacataaaaacaacatctcccacaaaaaattagaattttccgacgagggacggattaaatat 218  Q
    | |||||||||| | ||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  36217 ggttgaattttttcacgattttttccaggcatgttaggggcataaaaacaacatctcacacaaaaaattagaattttccgacgagggacggattaaatat 36316  T
Q  219 gaattttttacgcg 232  Q
    ||||||||||||||    
T  36317 gaattttttacgcg 36330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #8
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 19 - 232
Target Start/End: Original strand, 56504 - 56717
Alignment:
Q  19 aggtgctccccctatatatgcttgatgtgccatttccaattttgtagaaaaaggggttaaatttccctgcaggcataaagtcccgaaaaagtgacttaga 118  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| || |||||||||||||||||||||||||||||||||| ||||    
T  56504 aggtgctccccctatatatgcttgatgtgccatttccagttttgtagaaaaatgggtgaattttccctgcaggcataaagtcccgaaaaagtgacctaga 56603  T
Q  119 gattgaatttttccgcgattttttgcaggcatgttagggacataaaaacaacatctcccacaaaaaattagaattttccgacgagggacggattaaatat 218  Q
    | |||||||||| | ||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  56604 ggttgaattttttcacgattttttccaggcatgttaggggcataaaaacaacatctcacacaaaaaattagaattttccgacgagggacggattaaatat 56703  T
Q  219 gaattttttacgcg 232  Q
    ||||||||||||||    
T  56704 gaattttttacgcg 56717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #9
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 20 - 232
Target Start/End: Original strand, 43779 - 43991
Alignment:
Q  20 ggtgctccccctatatatgcttgatgtgccatttccaattttgtagaaaaaggggttaaatttccctgcaggcataaagtcccgaaaaagtgacttagag 119  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| || |||||||||||||||||||||||||||||||||| |||||    
T  43779 ggtgctccccctatatatgcttgatgtgccatttccagttttgtagaaaaatgggtgaattttccctgcaggcataaagtcccgaaaaagtgacctagag 43878  T
Q  120 attgaatttttccgcgattttttgcaggcatgttagggacataaaaacaacatctcccacaaaaaattagaattttccgacgagggacggattaaatatg 219  Q
     |||||||||| | ||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  43879 gttgaattttttcacgattttttccaggcatgttaggggcataaaaacaacatctcacacaaaaaattagaattttccgacgagggacggattaaatatg 43978  T
Q  220 aattttttacgcg 232  Q
    |||||||||||||    
T  43979 aattttttacgcg 43991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #10
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 19 - 232
Target Start/End: Original strand, 75165 - 75378
Alignment:
Q  19 aggtgctccccctatatatgcttgatgtgccatttccaattttgtagaaaaaggggttaaatttccctgcaggcataaagtcccgaaaaagtgacttaga 118  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| || ||||||||||||||||||||||| |||||||||| ||||    
T  75165 aggtgctccccctatatatgcttgatgtgccatttccagttttgtagaaaaatgggtgaattttccctgcaggcataaagtccctaaaaagtgacctaga 75264  T
Q  119 gattgaatttttccgcgattttttgcaggcatgttagggacataaaaacaacatctcccacaaaaaattagaattttccgacgagggacggattaaatat 218  Q
    | |||||||||| | ||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  75265 ggttgaattttttcacgattttttccaggcatgttaggggcataaaaacaacatctcacacaaaaaattagaattttccgacgagggacggattaaatat 75364  T
Q  219 gaattttttacgcg 232  Q
    ||||||||||||||    
T  75365 gaattttttacgcg 75378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #11
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 20 - 232
Target Start/End: Original strand, 53121 - 53333
Alignment:
Q  20 ggtgctccccctatatatgcttgatgtgccatttccaattttgtagaaaaaggggttaaatttccctgcaggcataaagtcccgaaaaagtgacttagag 119  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| || ||||||| ||||||||||||||| |||||||||| |||||    
T  53121 ggtgctccccctatatatgcttgatgtgccatttccagttttgtagaaaaatgggtgaattttcccttcaggcataaagtccctaaaaagtgacctagag 53220  T
Q  120 attgaatttttccgcgattttttgcaggcatgttagggacataaaaacaacatctcccacaaaaaattagaattttccgacgagggacggattaaatatg 219  Q
     |||||||||| | ||||||||  |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  53221 gttgaattttttcacgatttttaccaggcatgttaggggcataaaaacaacatctcacacaaaaaattagaattttccgacgagggacggattaaatatg 53320  T
Q  220 aattttttacgcg 232  Q
    |||||||||||||    
T  53321 aattttttacgcg 53333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #12
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 49 - 232
Target Start/End: Original strand, 33978 - 34161
Alignment:
Q  49 catttccaattttgtagaaaaaggggttaaatttccctgcaggcataaagtcccgaaaaagtgacttagagattgaatttttccgcgattttttgcaggc 148  Q
    |||||||| ||||||||||||| |||| || ||||||||||||||||||||||| |||||||||| ||||| |||||||||| | ||||||||| |||||    
T  33978 catttccagttttgtagaaaaatgggtgaattttccctgcaggcataaagtccctaaaaagtgacctagaggttgaattttttcacgattttttccaggc 34077  T
Q  149 atgttagggacataaaaacaacatctcccacaaaaaattagaattttccgacgagggacggattaaatatgaattttttacgcg 232  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34078 atgttaggggcataaaaacaacatctcacacaaaaaattagaattttccgacgagggacggattaaatatgaattttttacgcg 34161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #13
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 41 - 232
Target Start/End: Original strand, 35094 - 35285
Alignment:
Q  41 tgatgtgccatttccaattttgtagaaaaaggggttaaatttccctgcaggcataaagtcccgaaaaagtgacttagagattgaatttttccgcgatttt 140  Q
    |||||||||||||||| ||||||||||||| |||| || ||||||| ||||||||||||||| |||||||||| ||||| |||||||||| | |||||||    
T  35094 tgatgtgccatttccagttttgtagaaaaatgggtgaattttcccttcaggcataaagtccctaaaaagtgacctagaggttgaattttttcacgatttt 35193  T
Q  141 ttgcaggcatgttagggacataaaaacaacatctcccacaaaaaattagaattttccgacgagggacggattaaatatgaattttttacgcg 232  Q
    |  |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35194 taccaggcatgttaggggcataaaaacaacatctcacacaaaaaattagaattttccgacgagggacggattaaatatgaattttttacgcg 35285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #14
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 19 - 119
Target Start/End: Complemental strand, 3863 - 3762
Alignment:
Q  19 aggtgctccccctatatatgcttgatgtgccatttccaattttgtag-aaaaaggggttaaatttccctgcaggcataaagtcccgaaaaagtgacttag 117  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||    
T  3863 aggtgctccccctatatatgcttgatgtgccatttccaattttttagaaaaaaagtgttaaatttccctgcaggcataaagtcccgaaaaagtgacttag 3764  T
Q  118 ag 119  Q
    ||    
T  3763 ag 3762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #15
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 163 - 268
Target Start/End: Complemental strand, 3755 - 3650
Alignment:
Q  163 aaaacaacatctcccacaaaaaattagaattttccgacgagggacggattaaatatgaattttttacgcgccaaaaagtaaagaaagcgtgacatcaaaa 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||| | |||||| ||  | |||||||    
T  3755 aaaacaacatctcccacaaaaaattagaattttccgacgagggacggatcaaatatgtattttttacgcgtcaaaaactcaagaaaccgaaaaatcaaaa 3656  T
Q  263 caccaa 268  Q
    ||||||    
T  3655 caccaa 3650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 219 - 264
Target Start/End: Complemental strand, 30017 - 29972
Alignment:
Q  219 gaattttttacgcgccaaaaagtaaagaaagcgtgacatcaaaaca 264  Q
    |||| ||||| |||||| ||||| ||||||||||||||||||||||    
T  30017 gaatattttaagcgccagaaagtcaagaaagcgtgacatcaaaaca 29972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052 (Bit Score: 212; Significance: 1e-116; HSPs: 14)
Name: scaffold0052
Description:

Target: scaffold0052; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 19 - 264
Target Start/End: Complemental strand, 42167 - 41920
Alignment:
Q  19 aggtgctccccctatatatgcttgatgtgccatttccaattttgtagaaaaaggggttaaatttccctgcaggcataaagtcccgaaaaagtgacttaga 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||    
T  42167 aggtgctccccctatatatgcttgatgtgccatttccaattttgtagaaaaaagggtgaattttccctgcaggcataaagtcccgaaaaagtgacttaga 42068  T
Q  119 gattgaatttttccgcgatt-ttttgcaggcatgttagggacataaaaacaacatctcccac-aaaaaattagaattttccgacgagggacggattaaat 216  Q
    | |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  42067 ggttgaatttgtccgcgatttttttgcaggcatgttagggacataaaaacaacatctcccacaaaaaaattagaattttccgacgagggacggattaaat 41968  T
Q  217 atgaattttttacgcgccaaaaagtaaagaaagcgtgacatcaaaaca 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  41967 atgaattttttacgcgccaaaaagtaaagaaagcgtgacatcaaaaca 41920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 19 - 264
Target Start/End: Original strand, 53070 - 53317
Alignment:
Q  19 aggtgctccccctatatatgcttgatgtgccatttccaattttgtagaaaaaggggttaaatttccctgcaggcataaagtcccgaaaaagtgacttaga 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||    
T  53070 aggtgctccccctatatatgcttgatgtgccatttccaattttgtagaaaaaagggtgaattttccctgcaggcataaagtcccgaaaaagtgacttaga 53169  T
Q  119 gattgaatttttccgcga-ttttttgcaggcatgttagggacataaaaacaacatctcccac-aaaaaattagaattttccgacgagggacggattaaat 216  Q
    | |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  53170 ggttgaatttgtccgcgatttttttgcaggcatgttagggacataaaaacaacatctcccacaaaaaaattagaattttccgacgagggacggattaaat 53269  T
Q  217 atgaattttttacgcgccaaaaagtaaagaaagcgtgacatcaaaaca 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  53270 atgaattttttacgcgccaaaaagtaaagaaagcgtgacatcaaaaca 53317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #3
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 19 - 264
Target Start/End: Complemental strand, 4151 - 3904
Alignment:
Q  19 aggtgctccccctatatatgcttgatgtgccatttccaattttgtagaaaaaggggttaaatttccctgcaggcataaagtcccgaaaaagtgacttaga 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||| |||    
T  4151 aggtgctccccctatatatgcttgatgtgccatttccaattttgtagaaaaaagggtgaattttccctgcaggcataaagtcccgaaaaagtgactcaga 4052  T
Q  119 gattgaatttttccgcgatt-ttttgcaggcatgttagggacataaaaacaacatctcccac-aaaaaattagaattttccgacgagggacggattaaat 216  Q
    | |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  4051 ggttgaatttgtccgcgatttttttgcaggcatgttagggacataaaaacaacatctcccacaaaaaaattagaattttccgacgagggacggattaaat 3952  T
Q  217 atgaattttttacgcgccaaaaagtaaagaaagcgtgacatcaaaaca 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  3951 atgaattttttacgcgccaaaaagtaaagaaagcgtgacatcaaaaca 3904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #4
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 19 - 264
Target Start/End: Original strand, 29861 - 30108
Alignment:
Q  19 aggtgctccccctatatatgcttgatgtgccatttccaattttgtagaaaaaggggttaaatttccctgcaggcataaagtcccgaaaaagtgacttaga 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||| |||    
T  29861 aggtgctccccctatatatgcttgatgtgccatttccaattttgtagaaaaaagggtgaattttccctgcaggcataaagtcccgaaaaagtgactcaga 29960  T
Q  119 gattgaatttttccgcga-ttttttgcaggcatgttagggacataaaaacaacatctcccac-aaaaaattagaattttccgacgagggacggattaaat 216  Q
    | |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||    
T  29961 ggttgaatttgtccgcgatttttttgcaggcatgttagggacataaaaacaacatctcccacaaaaaaattagaatttttcgacgagggacggattaaat 30060  T
Q  217 atgaattttttacgcgccaaaaagtaaagaaagcgtgacatcaaaaca 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  30061 atgaattttttacgcgccaaaaagtaaagaaagcgtgacatcaaaaca 30108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #5
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 19 - 268
Target Start/End: Original strand, 72643 - 72892
Alignment:
Q  19 aggtgctccccctatatatgcttgatgtgccatttccaattttgtagaaaaaggggttaaatttccctgcaggcataaagtcccgaaaaagtgacttaga 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||    
T  72643 aggtgctccccctatatatgcttgatgtgccatttccaattttgtagaaaaaggggttaaatttccctgcaggcataaagtcctgaaaaattgacttaga 72742  T
Q  119 gattgaatttttccgcgattttttgcaggcatgttagggacataaaaacaacatctcccacaaaaaattagaattttccgacgagggacggattaaatat 218  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  72743 gattgaatttttccgcgagcttttgcaggcatgttagggacataaaaacaacatctcccgcaaaaaattagaattttccgacgagggacggatcaaatat 72842  T
Q  219 gaattttttacgcgccaaaaagtaaagaaagcgtgacatcaaaacaccaa 268  Q
    |||||||||||||| |||||| | |||||| || |  |||||||||||||    
T  72843 gaattttttacgcgtcaaaaactcaagaaaccgaggaatcaaaacaccaa 72892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #6
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 19 - 232
Target Start/End: Complemental strand, 3111 - 2898
Alignment:
Q  19 aggtgctccccctatatatgcttgatgtgccatttccaattttgtagaaaaaggggttaaatttccctgcaggcataaagtcccgaaaaagtgacttaga 118  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| || |||||||||||||||||||||||||||||||||| ||||    
T  3111 aggtgctccccctatatatgcttgatgtgccatttccagttttgtagaaaaatgggtgaattttccctgcaggcataaagtcccgaaaaagtgacctaga 3012  T
Q  119 gattgaatttttccgcgattttttgcaggcatgttagggacataaaaacaacatctcccacaaaaaattagaattttccgacgagggacggattaaatat 218  Q
    | |||||||||| | ||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  3011 ggttgaattttttcacgattttttccaggcatgttaggggcataaaaacaacatctcacacaaaaaattagaattttccgacgagggacggattaaatat 2912  T
Q  219 gaattttttacgcg 232  Q
    ||||||||||||||    
T  2911 gaattttttacgcg 2898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #7
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 19 - 232
Target Start/End: Complemental strand, 17647 - 17434
Alignment:
Q  19 aggtgctccccctatatatgcttgatgtgccatttccaattttgtagaaaaaggggttaaatttccctgcaggcataaagtcccgaaaaagtgacttaga 118  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| || |||||||||||||||||||||||||||||||||| ||||    
T  17647 aggtgctccccctatatatgcttgatgtgccatttccagttttgtagaaaaatgggtgaattttccctgcaggcataaagtcccgaaaaagtgacctaga 17548  T
Q  119 gattgaatttttccgcgattttttgcaggcatgttagggacataaaaacaacatctcccacaaaaaattagaattttccgacgagggacggattaaatat 218  Q
    | |||||||||| | ||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  17547 ggttgaattttttcacgattttttccaggcatgttaggggcataaaaacaacatctcacacaaaaaattagaattttccgacgagggacggattaaatat 17448  T
Q  219 gaattttttacgcg 232  Q
    ||||||||||||||    
T  17447 gaattttttacgcg 17434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #8
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 19 - 232
Target Start/End: Complemental strand, 41127 - 40914
Alignment:
Q  19 aggtgctccccctatatatgcttgatgtgccatttccaattttgtagaaaaaggggttaaatttccctgcaggcataaagtcccgaaaaagtgacttaga 118  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| || |||||||||||||||||||||||||||||||||| ||||    
T  41127 aggtgctccccctatatatgcttgatgtgccatttccagttttgtagaaaaatgggtgaattttccctgcaggcataaagtcccgaaaaagtgacctaga 41028  T
Q  119 gattgaatttttccgcgattttttgcaggcatgttagggacataaaaacaacatctcccacaaaaaattagaattttccgacgagggacggattaaatat 218  Q
    | |||||||||| | ||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  41027 ggttgaattttttcacgattttttccaggcatgttaggggcataaaaacaacatctcacacaaaaaattagaattttccgacgagggacggattaaatat 40928  T
Q  219 gaattttttacgcg 232  Q
    ||||||||||||||    
T  40927 gaattttttacgcg 40914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #9
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 19 - 232
Target Start/End: Original strand, 54108 - 54321
Alignment:
Q  19 aggtgctccccctatatatgcttgatgtgccatttccaattttgtagaaaaaggggttaaatttccctgcaggcataaagtcccgaaaaagtgacttaga 118  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| || |||||||||||||||||||||||||||||||||| ||||    
T  54108 aggtgctccccctatatatgcttgatgtgccatttccagttttgtagaaaaatgggtgaattttccctgcaggcataaagtcccgaaaaagtgacctaga 54207  T
Q  119 gattgaatttttccgcgattttttgcaggcatgttagggacataaaaacaacatctcccacaaaaaattagaattttccgacgagggacggattaaatat 218  Q
    | |||||||||| | ||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  54208 ggttgaattttttcacgattttttccaggcatgttaggggcataaaaacaacatctcacacaaaaaattagaattttccgacgagggacggattaaatat 54307  T
Q  219 gaattttttacgcg 232  Q
    ||||||||||||||    
T  54308 gaattttttacgcg 54321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #10
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 49 - 232
Target Start/End: Complemental strand, 62086 - 61903
Alignment:
Q  49 catttccaattttgtagaaaaaggggttaaatttccctgcaggcataaagtcccgaaaaagtgacttagagattgaatttttccgcgattttttgcaggc 148  Q
    |||||||| ||||||||||||| |||| || ||||||||||||||||||||||| |||||||||| ||||| |||||||||| | ||||||||| |||||    
T  62086 catttccagttttgtagaaaaatgggtgaattttccctgcaggcataaagtccctaaaaagtgacctagaggttgaattttttcacgattttttccaggc 61987  T
Q  149 atgttagggacataaaaacaacatctcccacaaaaaattagaattttccgacgagggacggattaaatatgaattttttacgcg 232  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  61986 atgttaggggcataaaaacaacatctcacacaaaaaattagaattttccgacgagggacggattaaatatgaattttttacgcg 61903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #11
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 19 - 119
Target Start/End: Original strand, 80672 - 80773
Alignment:
Q  19 aggtgctccccctatatatgcttgatgtgccatttccaattttgtag-aaaaaggggttaaatttccctgcaggcataaagtcccgaaaaagtgacttag 117  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||    
T  80672 aggtgctccccctatatatgcttgatgtgccatttccaattttttagaaaaaaagtgttaaatttccctgcaggcataaagtcccgaaaaagtgacttag 80771  T
Q  118 ag 119  Q
    ||    
T  80772 ag 80773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #12
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 180 - 264
Target Start/End: Complemental strand, 18512 - 18429
Alignment:
Q  180 aaaaaattagaattttccgacgagggacggattaaatatgaattttttacgcgccaaaaagtaaagaaagcgtgacatcaaaaca 264  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  18512 aaaaaattagaattttccgacgagggacggattaaatatgaat-ttttacgcgccaaaaagtaaagaaagcgtgacatcaaaaca 18429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #13
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 163 - 268
Target Start/End: Original strand, 80780 - 80885
Alignment:
Q  163 aaaacaacatctcccacaaaaaattagaattttccgacgagggacggattaaatatgaattttttacgcgccaaaaagtaaagaaagcgtgacatcaaaa 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||| | |||||| ||  | |||||||    
T  80780 aaaacaacatctcccacaaaaaattagaattttccgacgagggacggatcaaatatgtattttttacgcgtcaaaaactcaagaaaccgaaaaatcaaaa 80879  T
Q  263 caccaa 268  Q
    ||||||    
T  80880 caccaa 80885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 219 - 264
Target Start/End: Original strand, 66048 - 66093
Alignment:
Q  219 gaattttttacgcgccaaaaagtaaagaaagcgtgacatcaaaaca 264  Q
    |||| ||||| |||||| ||||| ||||||||||||||||||||||    
T  66048 gaatattttaagcgccagaaagtcaagaaagcgtgacatcaaaaca 66093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0515 (Bit Score: 153; Significance: 4e-81; HSPs: 3)
Name: scaffold0515
Description:

Target: scaffold0515; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 36 - 264
Target Start/End: Complemental strand, 12195 - 11967
Alignment:
Q  36 atgcttgatgtgccatttccaattttgtagaaaaaggggttaaatttccctgcaggcataaagtcccgaaaaagtgacttagagattgaatttttccgcg 135  Q
    |||||||||||||||||| || |||||||||||||   || || ||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||    
T  12195 atgcttgatgtgccattttcagttttgtagaaaaaaatgtgaatttttcctgcaggcataaagtcccgaaaaagtgacctagaggttgaatttttccgcg 12096  T
Q  136 attttttgcaggcatgttagggacataaaaacaacatctcccacaaaaaattagaattttccgacgagggacggattaaatatgaattttttacgcgcca 235  Q
    ||||||| ||||||||||  ||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  12095 atttttttcaggcatgtttaggacataaaaaaaacatcttctacaaaaaattagaattttccgacgagggacggattaaatatgaatattttatgcgcca 11996  T
Q  236 aaaagtaaagaaagcgtgacatcaaaaca 264  Q
    |||| ||||||||||||||||||||||||    
T  11995 aaaactaaagaaagcgtgacatcaaaaca 11967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0515; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 27 - 248
Target Start/End: Complemental strand, 11158 - 10936
Alignment:
Q  27 cccctatatatgcttgatgtgccatttccaattttgtagaaaaaggggttaaattt-ccctgcaggcataaagtcccgaaaaagtgacttagagattgaa 125  Q
    |||||||||||||||||||||||||||||| ||||||||||||| || | || ||| ||||||||||||||||||||||||||||||| ||||  |||||    
T  11158 cccctatatatgcttgatgtgccatttccagttttgtagaaaaaaggatgaatttttccctgcaggcataaagtcccgaaaaagtgacctagaagttgaa 11059  T
Q  126 tttttccgcgattttttgcaggcatgttagggacataaaaacaacatctcccacaaaaaattagaattttccgacgagggacggattaaatatgaatttt 225  Q
    ||||| | ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  11058 ttttttcacgattttttgcaggcatgttagggacataaaaaaagcatctcccacaaaaaattagaattttccgacgagggacaaattaaatatgaatttt 10959  T
Q  226 ttacgcgccaaaaagtaaagaaa 248  Q
    | ||||| |||||| | ||||||    
T  10958 tgacgcgtcaaaaactcaagaaa 10936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0515; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 219 - 264
Target Start/End: Complemental strand, 10652 - 10607
Alignment:
Q  219 gaattttttacgcgccaaaaagtaaagaaagcgtgacatcaaaaca 264  Q
    |||| ||||| |||||||||||| ||||||||||||||||||||||    
T  10652 gaatattttaagcgccaaaaagtcaagaaagcgtgacatcaaaaca 10607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 153; Significance: 4e-81; HSPs: 9)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 36 - 264
Target Start/End: Original strand, 32947 - 33175
Alignment:
Q  36 atgcttgatgtgccatttccaattttgtagaaaaaggggttaaatttccctgcaggcataaagtcccgaaaaagtgacttagagattgaatttttccgcg 135  Q
    |||||||||||||||||| || |||||||||||||   || || ||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||    
T  32947 atgcttgatgtgccattttcagttttgtagaaaaaaatgtgaatttttcctgcaggcataaagtcccgaaaaagtgacctagaggttgaatttttccgcg 33046  T
Q  136 attttttgcaggcatgttagggacataaaaacaacatctcccacaaaaaattagaattttccgacgagggacggattaaatatgaattttttacgcgcca 235  Q
    ||||||| ||||||||||  ||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  33047 atttttttcaggcatgtttaggacataaaaaaaacatcttctacaaaaaattagaattttccgacgagggacggattaaatatgaatattttatgcgcca 33146  T
Q  236 aaaagtaaagaaagcgtgacatcaaaaca 264  Q
    |||| ||||||||||||||||||||||||    
T  33147 aaaactaaagaaagcgtgacatcaaaaca 33175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 36 - 264
Target Start/End: Complemental strand, 38591 - 38363
Alignment:
Q  36 atgcttgatgtgccatttccaattttgtagaaaaaggggttaaatttccctgcaggcataaagtcccgaaaaagtgacttagagattgaatttttccgcg 135  Q
    |||||||||||||||||| || |||||||||||||   || || ||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||    
T  38591 atgcttgatgtgccattttcagttttgtagaaaaaaatgtgaatttttcctgcaggcataaagtcccgaaaaagtgacctagaggttgaatttttccgcg 38492  T
Q  136 attttttgcaggcatgttagggacataaaaacaacatctcccacaaaaaattagaattttccgacgagggacggattaaatatgaattttttacgcgcca 235  Q
    ||||||| ||||||||||  ||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  38491 atttttttcaggcatgtttaggacataaaaaaaacatcttctacaaaaaattagaattttccgacgagggacggattaaatatgaatattttatgcgcca 38392  T
Q  236 aaaagtaaagaaagcgtgacatcaaaaca 264  Q
    |||| ||||||||||||||||||||||||    
T  38391 aaaactaaagaaagcgtgacatcaaaaca 38363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 36 - 264
Target Start/End: Complemental strand, 19764 - 19537
Alignment:
Q  36 atgcttgatgtgccatttccaattttgtagaaaaaggggttaaatttccctgcaggcataaagtcccgaaaaagtgacttagagattgaatttttccgcg 135  Q
    |||||||||||||||||| || |||||||||||||   || || ||| |||||||||||||||||||||||||||||| ||||| |||| ||||||||||    
T  19764 atgcttgatgtgccattttcagttttgtagaaaaaaatgtgaatttttcctgcaggcataaagtcccgaaaaagtgacctagaggttga-tttttccgcg 19666  T
Q  136 attttttgcaggcatgttagggacataaaaacaacatctcccacaaaaaattagaattttccgacgagggacggattaaatatgaattttttacgcgcca 235  Q
    ||||||| ||||||||||  ||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  19665 atttttttcaggcatgtttaggacataaaaaaaacatcttctacaaaaaattagaattttccgacgagggacggattaaatatgaatattttatgcgcca 19566  T
Q  236 aaaagtaaagaaagcgtgacatcaaaaca 264  Q
    |||| ||||||||||||||||||||||||    
T  19565 aaaactaaagaaagcgtgacatcaaaaca 19537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152; HSP #4
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 27 - 248
Target Start/End: Complemental strand, 37554 - 37332
Alignment:
Q  27 cccctatatatgcttgatgtgccatttccaattttgtagaaaaaggggttaaattt-ccctgcaggcataaagtcccgaaaaagtgacttagagattgaa 125  Q
    |||||||||||||||||||||||||||||| ||||||||||||| || | || ||| ||||||||||||||||||||||||||||||| ||||  |||||    
T  37554 cccctatatatgcttgatgtgccatttccagttttgtagaaaaaaggatgaatttttccctgcaggcataaagtcccgaaaaagtgacctagaagttgaa 37455  T
Q  126 tttttccgcgattttttgcaggcatgttagggacataaaaacaacatctcccacaaaaaattagaattttccgacgagggacggattaaatatgaatttt 225  Q
    ||||| | ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  37454 ttttttcacgattttttgcaggcatgttagggacataaaaaaagcatctcccacaaaaaattagaattttccgacgagggacaaattaaatatgaatttt 37355  T
Q  226 ttacgcgccaaaaagtaaagaaa 248  Q
    | ||||| |||||| | ||||||    
T  37354 tgacgcgtcaaaaactcaagaaa 37332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152; HSP #5
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 27 - 248
Target Start/End: Complemental strand, 18728 - 18506
Alignment:
Q  27 cccctatatatgcttgatgtgccatttccaattttgtagaaaaaggggttaaattt-ccctgcaggcataaagtcccgaaaaagtgacttagagattgaa 125  Q
    |||||||||||||||||||||||||||||| ||||||||||||| || | || ||| ||||||||||||||||||||||||||||||  ||||  |||||    
T  18728 cccctatatatgcttgatgtgccatttccagttttgtagaaaaaaggatgaatttttccctgcaggcataaagtcccgaaaaagtgatctagaagttgaa 18629  T
Q  126 tttttccgcgattttttgcaggcatgttagggacataaaaacaacatctcccacaaaaaattagaattttccgacgagggacggattaaatatgaatttt 225  Q
    ||||| | ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  18628 ttttttcacgattttttgcaggcatgttagggacataaaaaaagcatctcccacaaaaaattagaattttccgacgagggacaaattaaatatgaatttt 18529  T
Q  226 ttacgcgccaaaaagtaaagaaa 248  Q
    | ||||| |||||| | ||||||    
T  18528 tgacgcgtcaaaaactcaagaaa 18506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152; HSP #6
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 19 - 143
Target Start/End: Original strand, 33977 - 34101
Alignment:
Q  19 aggtgctccccctatatatgcttgatgtgccatttccaattttgtagaaaaaggggttaaatttccctgcaggcataaagtcccgaaaaagtgacttaga 118  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||| || | |  ||||||||||||||||||||||||||||||||||  |||    
T  33977 aggtgctccccctatatatgcttgatgtgccatttccagttttgtagaaaaaaggatgatttttccctgcaggcataaagtcccgaaaaagtgaccgaga 34076  T
Q  119 gattgaatttttccgcgattttttg 143  Q
      |||||||||| | ||||||||||    
T  34077 agttgaattttttcacgattttttg 34101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 219 - 264
Target Start/End: Complemental strand, 18220 - 18175
Alignment:
Q  219 gaattttttacgcgccaaaaagtaaagaaagcgtgacatcaaaaca 264  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||    
T  18220 gaatattttaagcgccaaaaagtaaagaaagcgtgacatcaaaaca 18175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 219 - 264
Target Start/End: Complemental strand, 28272 - 28227
Alignment:
Q  219 gaattttttacgcgccaaaaagtaaagaaagcgtgacatcaaaaca 264  Q
    |||| ||||| |||||||||||| ||||||||||||||||||||||    
T  28272 gaatattttaagcgccaaaaagtcaagaaagcgtgacatcaaaaca 28227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 219 - 264
Target Start/End: Complemental strand, 37048 - 37003
Alignment:
Q  219 gaattttttacgcgccaaaaagtaaagaaagcgtgacatcaaaaca 264  Q
    |||| ||||| |||||||||||| ||||||||||||||||||||||    
T  37048 gaatattttaagcgccaaaaagtcaagaaagcgtgacatcaaaaca 37003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 90; Significance: 1e-43; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 19 - 264
Target Start/End: Original strand, 9476998 - 9477249
Alignment:
Q  19 aggtgctccccctatatatgcttgatgtgccatttccaattttgtagaaaaagg-ggttaaatttccctgcaggcataaagtcccgaaaaagtgacttag 117  Q
    ||||| |||||| |||||||||| ||||||||||| || |||||||||||||   ||| || ||| |||  ||||||||||||||||||||||||  |||    
T  9476998 aggtgatccccccatatatgctttatgtgccattttcagttttgtagaaaaaaaaggtcaatttttccttaaggcataaagtcccgaaaaagtgatctag 9477097  T
Q  118 agattgaatttttccgcgattttttgcaggcatgttagggacataaaaacaacatctcccacaaaaaa------ttagaattttccgacgagggacggat 211  Q
    || |||||||||||  ||| ||||||||||||||||  |||||||||||| | |||||||||||||||      ||||||||||||||| | ||||||||    
T  9477098 aggttgaatttttca-cgactttttgcaggcatgtttaggacataaaaacgaaatctcccacaaaaaaaaaaaattagaattttccgacaaaggacggat 9477196  T
Q  212 taaatatgaattttttacgcgccaaaaagtaaagaaagcgtgacatcaaaaca 264  Q
    ||||||||||||||| | |||||||||| | |||||| |   |||||||||||    
T  9477197 taaatatgaatttttgatgcgccaaaaactcaagaaaccaaaacatcaaaaca 9477249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 91 - 248
Target Start/End: Original strand, 9487882 - 9488043
Alignment:
Q  91 gcataaagtcccgaaaaagtgacttagagattgaatttttccgcgattttttgcaggcatgttagggacataaaaacaacatctcccacaaaaaat---- 186  Q
    |||||||||||  ||||||||||  |||| |||||||||||| ||||||||||||  ||||||||||||||||||||||||||||| ||||||||         
T  9487882 gcataaagtccgaaaaaagtgacccagaggttgaatttttccacgattttttgcattcatgttagggacataaaaacaacatctcctacaaaaaaaaaaa 9487981  T
Q  187 tagaattttccgacgagggacggattaaatatgaattttttacgcgccaaaaagtaaagaaa 248  Q
    |||||||||| ||||||||||||||||||||||| |||||||| ||||||||| | ||||||    
T  9487982 tagaattttctgacgagggacggattaaatatgagttttttacccgccaaaaactcaagaaa 9488043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 67 - 264
Target Start/End: Complemental strand, 9487877 - 9487679
Alignment:
Q  67 aaaaggggttaaatttccctgcaggcataaagtcccgaaaaa-gtgacttagagattgaatttttccgcgattttttgcaggcatgttagggacataaaa 165  Q
    |||| |||| || ||||| ||||| ||||||||||||||||| ||||| | ||| ||||||| || | ||||||||||||||||||||  |||||| |||    
T  9487877 aaaaagggtcaattttccatgcagccataaagtcccgaaaaaagtgacctggaggttgaattgtttcacgattttttgcaggcatgtttaggacatgaaa 9487778  T
Q  166 acaacatctcccacaaaaaattagaattttccgacgagggacggattaaatatgaattttttacgcgccaaaaagtaaagaaagcgtgacatcaaaaca 264  Q
    ||||||||| |||| ||| ||||||||||||||||  ||||| |||||||||||||||||| |||||  ||||| | |||||| | | |||||||||||    
T  9487777 acaacatcttccacgaaatattagaattttccgacaggggacagattaaatatgaatttttgacgcgttaaaaactcaagaaaccataacatcaaaaca 9487679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 101 - 239
Target Start/End: Original strand, 12776549 - 12776687
Alignment:
Q  101 ccgaaaaagtgacttagagattgaatttttccgcgattttttgcaggcatgttagggacataaaaacaacatctcccacaaaaaattagaattttccgac 200  Q
    ||||||||||| | ||||| ||||| |||| |   ||||||||||  |||||| || ||| ||||| |||||||||||||||||||| ||||||| ||||    
T  12776549 ccgaaaaagtgtcctagaggttgaactttttcaaaattttttgcaatcatgtttggaacaaaaaaagaacatctcccacaaaaaatttgaatttttcgac 12776648  T
Q  201 gagggacggattaaatatgaattttttacgcgccaaaaa 239  Q
     ||||| ||||||||||||||||||| ||||||| ||||    
T  12776649 aagggatggattaaatatgaatttttaacgcgcctaaaa 12776687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 162 - 239
Target Start/End: Complemental strand, 22019126 - 22019049
Alignment:
Q  162 aaaaacaacatctcccacaaaaaattagaattttccgacgagggacggattaaatatgaattttttacgcgccaaaaa 239  Q
    ||||| |||||||||||||||||||| || |||| |||| ||||||||||||||||||||||||| ||||||| ||||    
T  22019126 aaaaataacatctcccacaaaaaatttgagtttttcgacaagggacggattaaatatgaatttttaacgcgcctaaaa 22019049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 163 - 239
Target Start/End: Original strand, 9904036 - 9904112
Alignment:
Q  163 aaaacaacatctcccacaaaaaattagaattttccgacgagggacggattaaatatgaattttttacgcgccaaaaa 239  Q
    |||| |||||||||||||||||||| ||||||| |||| | ||||||||||||||||||||||| ||||||| ||||    
T  9904036 aaaataacatctcccacaaaaaatttgaatttttcgacaatggacggattaaatatgaatttttaacgcgcctaaaa 9904112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 9487479 - 9487425
Alignment:
Q  19 aggtgctccccctatatatgcttgatgtgccatttccaattttgtagaaaaaggg 73  Q
    ||||| ||| ||||||||||||||||||||||||| ||||||| |||||||||||    
T  9487479 aggtgttcctcctatatatgcttgatgtgccattttcaattttatagaaaaaggg 9487425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 162 - 239
Target Start/End: Original strand, 33202808 - 33202885
Alignment:
Q  162 aaaaacaacatctcccacaaaaaattagaattttccgacgagggacggattaaatatgaattttttacgcgccaaaaa 239  Q
    ||||| ||||||| |||||||||||| ||||||| |||| ||||||  ||||||||||||||||| | ||||| ||||    
T  33202808 aaaaataacatcttccacaaaaaatttgaatttttcgacaagggacaaattaaatatgaatttttaaagcgcctaaaa 33202885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 239
Target Start/End: Complemental strand, 26838542 - 26838471
Alignment:
Q  168 aacatctcccacaaaaaattagaattttccgacgagggacggattaaatatgaattttttacgcgccaaaaa 239  Q
    |||||||||||||||||||| ||||||| |||| ||||| | |||| |||| ||||||| ||||||| ||||    
T  26838542 aacatctcccacaaaaaatttgaatttttcgacaagggaagaattagatattaatttttaacgcgcctaaaa 26838471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 158 - 236
Target Start/End: Complemental strand, 4222041 - 4221963
Alignment:
Q  158 acataaaaacaacatctcccacaaaaaattagaattttccgacgagggacggattaaatatgaattttttacgcgccaa 236  Q
    ||||||||| ||||| |||| ||||||||||||||||| | || | ||| |||||||||||| |||||| | |||||||    
T  4222041 acataaaaaaaacatttcccgcaaaaaattagaatttttcaacaacggatggattaaatatggatttttaatgcgccaa 4221963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 226
Target Start/End: Original strand, 9491012 - 9491062
Alignment:
Q  176 ccacaaaaaattagaattttccgacgagggacggattaaatatgaattttt 226  Q
    |||||||||||||||||||| |||  || |||||||||| |||||||||||    
T  9491012 ccacaaaaaattagaatttttcgataagagacggattaattatgaattttt 9491062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 179 - 236
Target Start/End: Original strand, 9904373 - 9904430
Alignment:
Q  179 caaaaaattagaattttccgacgagggacggattaaatatgaattttttacgcgccaa 236  Q
    ||||||||||||||| | |||| | ||| ||||||||||||||||||| | |||||||    
T  9904373 caaaaaattagaattattcgacaaaggatggattaaatatgaatttttaatgcgccaa 9904430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 226
Target Start/End: Complemental strand, 21556536 - 21556487
Alignment:
Q  177 cacaaaaaattagaattttccgacgagggacggattaaatatgaattttt 226  Q
    |||||||||||||| |||||||||   ||||||||||| |||||||||||    
T  21556536 cacaaaaaattagatttttccgactctggacggattaattatgaattttt 21556487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 239
Target Start/End: Complemental strand, 4222399 - 4222275
Alignment:
Q  115 tagagattgaatttttccgcgattttttgcaggcatgttagggacataaaaacaacatctcccacaaaaaattagaattttccgacgagggacggattaa 214  Q
    ||||| ||||| |||| | ||||||||||||  ||||||  | ||  ||| | |||||||||||||||   || |||||||  ||| | |||| ||||||    
T  4222399 tagaggttgaactttttcacgattttttgcaatcatgtttagaaccaaaacataacatctcccacaaattttttgaattttttgacaatggacagattaa 4222300  T
Q  215 atatgaattttttacgcgccaaaaa 239  Q
    |||||||||||| ||||||| ||||    
T  4222299 atatgaatttttaacgcgcctaaaa 4222275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 248
Target Start/End: Complemental strand, 25915238 - 25915170
Alignment:
Q  180 aaaaaattagaattttccgacgagggacggattaaatatgaattttttacgcgccaaaaagtaaagaaa 248  Q
    ||||||||| ||||| || || ||||| ||||| ||||||||||||| ||||| |||||| | ||||||    
T  25915238 aaaaaattaaaatttcccaacaagggatggattgaatatgaatttttaacgcgtcaaaaaatcaagaaa 25915170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 8e-33; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 19 - 130
Target Start/End: Complemental strand, 4470916 - 4470805
Alignment:
Q  19 aggtgctccccctatatatgcttgatgtgccatttccaattttgtagaaaaaggggttaaatttccctgcaggcataaagtcccgaaaaagtgacttaga 118  Q
    |||||||||||||||||||| |||||||| |||||||| |||||||||||||  ||| || ||| |||||||||||||||||||||||||||||| ||||    
T  4470916 aggtgctccccctatatatgtttgatgtgtcatttccagttttgtagaaaaaatggtgaatttttcctgcaggcataaagtcccgaaaaagtgacctaga 4470817  T
Q  119 gattgaattttt 130  Q
    | ||||||||||    
T  4470816 ggttgaattttt 4470805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 101 - 239
Target Start/End: Complemental strand, 10601721 - 10601583
Alignment:
Q  101 ccgaaaaagtgacttagagattgaatttttccgcgattttttgcaggcatgttagggacataaaaacaacatctcccacaaaaaattagaattttccgac 200  Q
    ||||||||||| | || || ||||| ||||   ||||||||||||  ||||||  | ||| ||||| |||||||||||||||||||| ||||||| ||||    
T  10601721 ccgaaaaagtgtcctaaaggttgaacttttttacgattttttgcactcatgtttagaacaaaaaaataacatctcccacaaaaaatttgaatttttcgac 10601622  T
Q  201 gagggacggattaaatatgaattttttacgcgccaaaaa 239  Q
     ||||| ||||||||||||||||||| || |||| ||||    
T  10601621 aagggatggattaaatatgaatttttaacacgcctaaaa 10601583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 162 - 239
Target Start/End: Complemental strand, 44329234 - 44329157
Alignment:
Q  162 aaaaacaacatctcccacaaaaaattagaattttccgacgagggacggattaaatatgaattttttacgcgccaaaaa 239  Q
    ||||| |||||||||||||||||||| || |||| |||| ||||||||||||||||||||||||| ||||||| ||||    
T  44329234 aaaaataacatctcccacaaaaaatttgagtttttcgacaagggacggattaaatatgaatttttaacgcgcctaaaa 44329157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 137 - 239
Target Start/End: Complemental strand, 36584029 - 36583927
Alignment:
Q  137 ttttttgcaggcatgttagggacataaaaacaacatctcccacaaaaaattagaattttccgacgagggacggattaaatatgaattttttacgcgccaa 236  Q
    |||||||||  ||||||  | ||| ||||| |||||||||||||||||||| ||||||| |||| ||||| | ||||||||||||||||| ||||||| |    
T  36584029 ttttttgcactcatgtttagaacaaaaaaataacatctcccacaaaaaatttgaatttttcgacaagggatgaattaaatatgaatttttaacgcgccta 36583930  T
Q  237 aaa 239  Q
    |||    
T  36583929 aaa 36583927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 148 - 239
Target Start/End: Complemental strand, 40440239 - 40440146
Alignment:
Q  148 catgttagggacataaaaacaa--catctcccacaaaaaattagaattttccgacgagggacggattaaatatgaattttttacgcgccaaaaa 239  Q
    ||||||| ||||||||||| ||  ||| ||||||||||||||| ||||||||||| | ||| ||||||||||||||||||| | ||||||||||    
T  40440239 catgttaaggacataaaaagaaaacatttcccacaaaaaattaaaattttccgacaatggatggattaaatatgaatttttaatgcgccaaaaa 40440146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 162 - 239
Target Start/End: Complemental strand, 44656033 - 44655956
Alignment:
Q  162 aaaaacaacatctcccacaaaaaattagaattttccgacgagggacggattaaatatgaattttttacgcgccaaaaa 239  Q
    ||||| ||||||| ||| |||||||| ||||||| |||| ||||||||||||||||||||||||| ||||||| ||||    
T  44656033 aaaaataacatctaccataaaaaatttgaatttttcgacaagggacggattaaatatgaatttttaacgcgcctaaaa 44655956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 168 - 239
Target Start/End: Complemental strand, 6172750 - 6172679
Alignment:
Q  168 aacatctcccacaaaaaattagaattttccgacgagggacggattaaatatgaattttttacgcgccaaaaa 239  Q
    |||||||||||||||||| | ||||||| |||| ||||||||||||||||||| ||||| ||||||| ||||    
T  6172750 aacatctcccacaaaaaaattgaatttttcgacaagggacggattaaatatgattttttaacgcgcctaaaa 6172679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 158 - 236
Target Start/End: Complemental strand, 15629668 - 15629590
Alignment:
Q  158 acataaaaacaacatctcccacaaaaaattagaattttccgacgagggacggattaaatatgaattttttacgcgccaa 236  Q
    ||||||||| ||||| |||| ||||||||||||||||| |||| | ||| ||||||||||||||||||| | |||||||    
T  15629668 acataaaaaaaacatttcccgcaaaaaattagaatttttcgacaacggatggattaaatatgaatttttaatgcgccaa 15629590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 101 - 239
Target Start/End: Complemental strand, 15630025 - 15629887
Alignment:
Q  101 ccgaaaaagtgacttagagattgaatttttccgcgattttttgcaggcatgttagggacataaaaacaacatctcccacaaaaaattagaattttccgac 200  Q
    ||||||||||| | ||||  ||||| |||| | || |||||||||  ||||||  | ||||||||| ||||| | |||||||||||| |||||||  |||    
T  15630025 ccgaaaaagtgtcctagatgttgaactttttcacgcttttttgcactcatgtttagaacataaaaataacattttccacaaaaaatttgaattttttgac 15629926  T
Q  201 gagggacggattaaatatgaattttttacgcgccaaaaa 239  Q
     |||||| ||||||||||||||| || ||||||| ||||    
T  15629925 aagggacagattaaatatgaattcttaacgcgcctaaaa 15629887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 158 - 226
Target Start/End: Original strand, 31298521 - 31298589
Alignment:
Q  158 acataaaaacaacatctcccacaaaaaattagaattttccgacgagggacggattaaatatgaattttt 226  Q
    ||||||||| ||||| |||| ||||||||||||||||| |||| | ||| |||||||||||||||||||    
T  31298521 acataaaaaaaacatttcccgcaaaaaattagaatttttcgacaacggatggattaaatatgaattttt 31298589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 162 - 239
Target Start/End: Original strand, 31298209 - 31298286
Alignment:
Q  162 aaaaacaacatctcccacaaaaaattagaattttccgacgagggacggattaaatatgaattttttacgcgccaaaaa 239  Q
    ||||| |||||||||||||||||||| |||||||  |||  ||||||||||||||||||| |||| | ||||| ||||    
T  31298209 aaaaataacatctcccacaaaaaatttgaattttttgacatgggacggattaaatatgaaattttaatgcgcctaaaa 31298286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 226
Target Start/End: Complemental strand, 37621837 - 37621788
Alignment:
Q  177 cacaaaaaattagaattttccgacgagggacggattaaatatgaattttt 226  Q
    |||||||||| ||| ||||||||| ||||||||||||| |||||||||||    
T  37621837 cacaaaaaatcagatttttccgactagggacggattaattatgaattttt 37621788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 226
Target Start/End: Complemental strand, 6172444 - 6172376
Alignment:
Q  158 acataaaaacaacatctcccacaaaaaattagaattttccgacgagggacggattaaatatgaattttt 226  Q
    ||||||||| || || |||  ||||||||||||||||| |||| | ||| |||||||||||||||||||    
T  6172444 acataaaaaaaatatttcctgcaaaaaattagaatttttcgacaacggatggattaaatatgaattttt 6172376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 8e-30; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 23 - 165
Target Start/End: Complemental strand, 22624039 - 22623897
Alignment:
Q  23 gctccccctatatatgcttgatgtgccatttccaattttgtagaaaaaggggttaaatttccctgcaggcataaagtcccgaaaaagtgacttagagatt 122  Q
    ||||| |||||||||||||||||||||||||||| |||||||||||||  |||||| ||||||||||||| ||||||||| |||||| ||  | | | ||    
T  22624039 gctcctcctatatatgcttgatgtgccatttccagttttgtagaaaaaatggttaattttccctgcaggcttaaagtcccaaaaaagggatctggtggtt 22623940  T
Q  123 gaatttttccgcgattttttgcaggcatgttagggacataaaa 165  Q
    | ||||||||  |||||||| |||| |||||||| ||||||||    
T  22623939 gtatttttccatgattttttacaggtatgttaggtacataaaa 22623897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 162 - 239
Target Start/End: Original strand, 8815948 - 8816025
Alignment:
Q  162 aaaaacaacatctcccacaaaaaattagaattttccgacgagggacggattaaatatgaattttttacgcgccaaaaa 239  Q
    ||||| |||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||| ||||||| ||||    
T  8815948 aaaaataacatctcccacaaaaaatttgaatttttcgacaagggacggattaaatatgaatttttaacgcgcctaaaa 8816025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 101 - 239
Target Start/End: Original strand, 21543505 - 21543644
Alignment:
Q  101 ccgaaaaagtgacttagagattgaatttttc-cgcgattttttgcaggcatgttagggacataaaaacaacatctcccacaaaaaattagaattttccga 199  Q
    ||||||||||  | ||||| ||||||||||  | ||||||||||||  ||||||  | ||| ||||| |||||||||||||||||||| ||||||| | |    
T  21543505 ccgaaaaagtatcctagaggttgaatttttatcacgattttttgcactcatgtttagaacaaaaaaataacatctcccacaaaaaatttgaatttttcaa 21543604  T
Q  200 cgagggacggattaaatatgaattttttacgcgccaaaaa 239  Q
    | ||||||||||||||||||||||||| ||| ||| ||||    
T  21543605 caagggacggattaaatatgaatttttaacgtgcctaaaa 21543644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 101 - 239
Target Start/End: Original strand, 42001119 - 42001257
Alignment:
Q  101 ccgaaaaagtgacttagagattgaatttttccgcgattttttgcaggcatgttagggacataaaaacaacatctcccacaaaaaattagaattttccgac 200  Q
    ||||||||||| | ||||||||||| |||| |  | |||||| ||  ||||||  | ||| ||||| ||||||| |||||||||||| ||||||| ||||    
T  42001119 ccgaaaaagtgtcctagagattgaactttttcatgcttttttacactcatgtttagaacaaaaaaataacatcttccacaaaaaatttgaatttttcgac 42001218  T
Q  201 gagggacggattaaatatgaattttttacgcgccaaaaa 239  Q
     |||||| |||||||||||||||||| ||||||| ||||    
T  42001219 aagggacagattaaatatgaatttttaacgcgccgaaaa 42001257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 162 - 239
Target Start/End: Complemental strand, 2809042 - 2808965
Alignment:
Q  162 aaaaacaacatctcccacaaaaaattagaattttccgacgagggacggattaaatatgaattttttacgcgccaaaaa 239  Q
    ||||| ||||||||||||||||||||  |||||| |||| ||||||||||||||||||||||||| ||||||| ||||    
T  2809042 aaaaataacatctcccacaaaaaatttaaatttttcgacaagggacggattaaatatgaatttttaacgcgcctaaaa 2808965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 105 - 226
Target Start/End: Complemental strand, 24536314 - 24536192
Alignment:
Q  105 aaaagtgacttagagattgaatttttccgcgattttttgcaggcatgttagggacataaaaacaa-catctcccacaaaaaattagaattttccgacgag 203  Q
    ||||||||| ||||| ||||||||||   | ||||||||||  ||||||  ||||| ||||| || |||||||||||||||||| ||||||| ||||       
T  24536314 aaaagtgacctagaggttgaattttttaacaattttttgcacacatgtttaggacaaaaaaaaaaacatctcccacaaaaaatttgaatttttcgacatt 24536215  T
Q  204 ggacggattaaatatgaattttt 226  Q
    |||||||||||||||||||||||    
T  24536214 ggacggattaaatatgaattttt 24536192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 137 - 239
Target Start/End: Original strand, 27642050 - 27642152
Alignment:
Q  137 ttttttgcaggcatgttagggacataaaaacaacatctcccacaaaaaattagaattttccgacgagggacggattaaatatgaattttttacgcgccaa 236  Q
    |||||||||  ||||||  | ||| ||||| |||||||||||||||||||| ||||||| | || ||||||||||||||||||||||||| | ||||| |    
T  27642050 ttttttgcactcatgtttagaacaaaaaaataacatctcccacaaaaaatttgaatttttcaacaagggacggattaaatatgaatttttaatgcgccta 27642149  T
Q  237 aaa 239  Q
    |||    
T  27642150 aaa 27642152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 176 - 264
Target Start/End: Complemental strand, 24535931 - 24535843
Alignment:
Q  176 ccacaaaaaattagaattttccgacgagggacggattaaatatgaattttttacgcgccaaaaagtaaagaaagcgtgacatcaaaaca 264  Q
    ||||||||||||||||||||||||| | |||| |||||||||||||||||| | |||||||||| | |||||| |   |||||||||||    
T  24535931 ccacaaaaaattagaattttccgacaacggacagattaaatatgaatttttaatgcgccaaaaactcaagaaaccaaaacatcaaaaca 24535843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 105 - 226
Target Start/End: Complemental strand, 24536737 - 24536614
Alignment:
Q  105 aaaagtgacttagagattgaatttttccgcgattttttgcaggcatgttagggacataaaaacaa--catctcccacaaaaaattagaattttccgacga 202  Q
    ||||||||| ||||| ||||||||||   | ||||||||||  ||||||  ||||| ||||| ||  |||||||||||||||||| ||||||| ||||      
T  24536737 aaaagtgacctagaggttgaattttttaacaattttttgcacacatgtttaggacaaaaaaaaaaaacatctcccacaaaaaatttgaatttttcgacat 24536638  T
Q  203 gggacggattaaatatgaattttt 226  Q
     |||||||||||||||||||||||    
T  24536637 tggacggattaaatatgaattttt 24536614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 101 - 226
Target Start/End: Original strand, 28991774 - 28991895
Alignment:
Q  101 ccgaaaaagtgacttagagattgaatttttccgcgattttttgcaggcatgttagggacataaaaacaacatctcccacaaaaaattagaattttccgac 200  Q
    ||||||||||||  |||| ||||| ||||| |  | ||||||||| |||||||  ||  ||||||  ||||||| ||| |||||||| ||||||||||||    
T  28991774 ccgaaaaagtgatctagatattgatttttttcatgcttttttgcatgcatgtttagg--ataaaa--aacatcttccataaaaaatttgaattttccgac 28991869  T
Q  201 gagggacggattaaatatgaattttt 226  Q
     |||||||||||||||||||||||||    
T  28991870 aagggacggattaaatatgaattttt 28991895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 137 - 248
Target Start/End: Original strand, 28992127 - 28992240
Alignment:
Q  137 ttttttgcaggcatgttagggacataaaaacaacatctcc--cacaaaaaattagaattttccgacgagggacggattaaatatgaattttttacgcgcc 234  Q
    ||||||||| |||||||  ||||||||||||||||||| |  || ||||||||| |||||||| || ||||||  ||||||||||||||||| | || ||    
T  28992127 ttttttgcatgcatgtttaggacataaaaacaacatcttctacaaaaaaaattaaaattttccaacaagggacaaattaaatatgaatttttaatgcacc 28992226  T
Q  235 aaaaagtaaagaaa 248  Q
    ||||| | ||||||    
T  28992227 aaaaactcaagaaa 28992240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 148 - 226
Target Start/End: Complemental strand, 35588397 - 35588319
Alignment:
Q  148 catgttagggacataaaaacaacatctcccacaaaaaattagaattttccgacgagggacggattaaatatgaattttt 226  Q
    ||||||| ||||||||||| ||||| |||||||||||||||||||||||| || | ||| | ||||||||| |||||||    
T  35588397 catgttaaggacataaaaaaaacatttcccacaaaaaattagaattttccaacaacggatgaattaaatattaattttt 35588319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 136 - 226
Target Start/End: Original strand, 28427931 - 28428020
Alignment:
Q  136 attttttgcaggcatgttagggacataaaaacaacatctcccacaaaaaattagaattttccgacgagggacggattaaatatgaattttt 226  Q
    ||||||||||  ||||||| ||||||||||| || || || ||||||||||||||||||| |||| | | | |||||||||||||||||||    
T  28427931 attttttgcacccatgttaaggacataaaaa-aatatttcacacaaaaaattagaattttgcgacaaagtatggattaaatatgaattttt 28428020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 231
Target Start/End: Complemental strand, 22623895 - 22623849
Alignment:
Q  185 attagaattttccgacgagggacggattaaatatgaattttttacgc 231  Q
    |||||||||||||||||||||||  ||||||||||||||||| ||||    
T  22623895 attagaattttccgacgagggacatattaaatatgaatttttgacgc 22623849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 226
Target Start/End: Original strand, 27642375 - 27642442
Alignment:
Q  158 acataaaaacaacatctcccacaaaaaattagaattttccgacgagggacggattaaatatgaattttt 226  Q
    ||||||||| ||||| | || ||||||||||||||||| |||| | ||| |||||||||||||||||||    
T  27642375 acataaaaa-aacattttccgcaaaaaattagaatttttcgacaacggatggattaaatatgaattttt 27642442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 226
Target Start/End: Original strand, 42001499 - 42001567
Alignment:
Q  158 acataaaaacaacatctcccacaaaaaattagaattttccgacgagggacggattaaatatgaattttt 226  Q
    ||||||||| ||||| | || |||||||||| |||||| |||| | ||| |||||||||||||||||||    
T  42001499 acataaaaaaaacattttcctcaaaaaattaaaatttttcgacaacggatggattaaatatgaattttt 42001567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 115 - 236
Target Start/End: Original strand, 8816218 - 8816339
Alignment:
Q  115 tagagattgaatttttccgcgattttttgcaggcatgttagggacataaaaacaacatctcccacaaaaaattagaattttccgacgagggacggattaa 214  Q
    ||||| |||||||||| |   ||||||||||  ||| ||| | |||||||||  |||| |||| ||||||||||||||||| |||| | |||  ||||||    
T  8816218 tagaggttgaattttttcattattttttgcacacatattaagaacataaaaaacacatttcccgcaaaaaattagaatttttcgacaacggatagattaa 8816317  T
Q  215 atatgaattttttacgcgccaa 236  Q
     ||||| ||||| | |||||||    
T  8816318 gtatgagtttttaatgcgccaa 8816339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 248
Target Start/End: Complemental strand, 3153017 - 3152949
Alignment:
Q  180 aaaaaattagaattttccgacgagggacggattaaatatgaattttttacgcgccaaaaagtaaagaaa 248  Q
    |||||||||||||||| |||  | ||| ||||||||||||||||||| | || ||||||| | ||||||    
T  3153017 aaaaaattagaatttttcgaaaacggatggattaaatatgaatttttaatgcaccaaaaactcaagaaa 3152949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 101 - 239
Target Start/End: Complemental strand, 8213900 - 8213762
Alignment:
Q  101 ccgaaaaagtgacttagagattgaatttttccgcgattttttgcaggcatgttagggacataaaaacaacatctcccacaaaaaattagaattttccgac 200  Q
    ||||||||||||| ||||  ||||| |||| | || |||||||||  ||||||  | ||| ||||| |||||||||||||||||||| ||||||| ||||    
T  8213900 ccgaaaaagtgacctagatgttgaaatttttcacgcttttttgcactcatgtttagaacaaaaaaataacatctcccacaaaaaattggaatttttcgac 8213801  T
Q  201 gagggacggattaaatatgaattttttacgcgccaaaaa 239  Q
     ||||||||||||||||||||||||| ||||||| ||||    
T  8213800 aagggacggattaaatatgaatttttaacgcgcctaaaa 8213762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 121 - 248
Target Start/End: Original strand, 30471053 - 30471179
Alignment:
Q  121 ttgaatttttccgcgattttttgcaggcatgttagggacataaaaacaacatctcccacaaaaaattagaattttccgacgagggacggattaaatatga 220  Q
    |||||||||| ||  ||||||||||   |||||| ||||||||||| ||||| ||||||||||||||||||||||||||| | ||| ||||||| |||||    
T  30471053 ttgaattttttcgttattttttgcacatatgttaaggacataaaaa-aacatttcccacaaaaaattagaattttccgacaacggatggattaattatga 30471151  T
Q  221 attttttacgcgccaaaaagtaaagaaa 248  Q
    |||||| | |||||||||| | ||||||    
T  30471152 atttttaatgcgccaaaaactcaagaaa 30471179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 101 - 239
Target Start/End: Complemental strand, 12937036 - 12936898
Alignment:
Q  101 ccgaaaaagtgacttagagattgaatttttccgcgattttttgcaggcatgttagggacataaaaacaacatctcccacaaaaaattagaattttccgac 200  Q
    ||||||||||| | || || ||||| ||||   ||||||||||||  ||||||  | ||  ||||| |||||||||||||||||||| ||||||| ||||    
T  12937036 ccgaaaaagtgtcctaaaggttgaacttttttacgattttttgcactcatgtttagaactaaaaaataacatctcccacaaaaaatttgaatttttcgac 12936937  T
Q  201 gagggacggattaaatatgaattttttacgcgccaaaaa 239  Q
     ||||||||||||||||||||||||| ||||||| ||||    
T  12936936 aagggacggattaaatatgaatttttaacgcgcctaaaa 12936898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 101 - 239
Target Start/End: Complemental strand, 12951199 - 12951061
Alignment:
Q  101 ccgaaaaagtgacttagagattgaatttttccgcgattttttgcaggcatgttagggacataaaaacaacatctcccacaaaaaattagaattttccgac 200  Q
    ||||||||||| | || || ||||| ||||   ||||||||||||  ||||||  | ||  ||||| ||||||||||||||||||||  |||||| ||||    
T  12951199 ccgaaaaagtgtcctaaaggttgaacttttttacgattttttgcactcatgtttagaactaaaaaataacatctcccacaaaaaattttaatttttcgac 12951100  T
Q  201 gagggacggattaaatatgaattttttacgcgccaaaaa 239  Q
     ||||||||||||||||||||||||| ||||||| ||||    
T  12951099 aagggacggattaaatatgaatttttcacgcgcctaaaa 12951061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 105 - 231
Target Start/End: Original strand, 28108852 - 28108978
Alignment:
Q  105 aaaagtgacttagagattgaatttttccgcgattttttgcaggcatgttagggacataaaaacaacatctcccacaaaaaattagaattttccgacgagg 204  Q
    ||||||||| ||||  |||||||||| | | |||||||| |  ||||||  ||||| ||||| ||||||||||||||||| || |||||||  ||| |||    
T  28108852 aaaagtgacctagaagttgaattttttcacaattttttgtactcatgtttaggacaaaaaaagaacatctcccacaaaaattttgaattttttgacaagg 28108951  T
Q  205 gacggattaaatatgaattttttacgc 231  Q
    |||||||||||||||||||||| ||||    
T  28108952 gacggattaaatatgaatttttaacgc 28108978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 137 - 239
Target Start/End: Complemental strand, 17646218 - 17646116
Alignment:
Q  137 ttttttgcaggcatgttagggacataaaaacaacatctcccacaaaaaattagaattttccgacgagggacggattaaatatgaattttttacgcgccaa 236  Q
    |||||||||  ||||||  | ||| ||||| || ||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||| ||| ||| |    
T  17646218 ttttttgcactcatgtttagaacaaaaaaataatatctcccacaaaaaatttgaatttttcgacaagggacggattaaatatgaatttttaacgtgccta 17646119  T
Q  237 aaa 239  Q
    |||    
T  17646118 aaa 17646116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 104 - 239
Target Start/End: Complemental strand, 41473275 - 41473140
Alignment:
Q  104 aaaaagtgacttagagattgaatttttccgcgattttttgcaggcatgttagggac-ataaaaacaacatctcccacaaaaaattagaattttccgacga 202  Q
    |||||||||||||||| |||| ||||||  ||| ||||||||  ||||||  |||| | ||||| |||||  ||||||||||||| ||||||| |||| |    
T  41473275 aaaaagtgacttagaggttgagtttttca-cgactttttgcactcatgtttaggaccaaaaaaaaaacatagcccacaaaaaatttgaatttttcgacaa 41473177  T
Q  203 gggacggattaaatatgaattttttacgcgccaaaaa 239  Q
     | ||||||||||||||||||||| ||||||| ||||    
T  41473176 agaacggattaaatatgaatttttaacgcgcctaaaa 41473140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 162 - 239
Target Start/End: Complemental strand, 2898623 - 2898546
Alignment:
Q  162 aaaaacaacatctcccacaaaaaattagaattttccgacgagggacggattaaatatgaattttttacgcgccaaaaa 239  Q
    ||||| ||||||||||| ||||| || ||||||| |||| | ||||||||||||||||||||||| ||||||| ||||    
T  2898623 aaaaataacatctcccataaaaattttgaatttttcgacaatggacggattaaatatgaatttttaacgcgcctaaaa 2898546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 103 - 239
Target Start/End: Original strand, 27809061 - 27809196
Alignment:
Q  103 gaaaaagtgacttagagattgaatttttccgcgattttttgcaggcatgttagggacataaaaacaacatctcccacaaaaaattagaattttccgacga 202  Q
    ||||||||| | ||||| ||||| |||||  || |||||||||  ||||||  | ||| ||||| |||||||||| ||||||||| ||||||| |||| |    
T  27809061 gaaaaagtgtcctagaggttgaacttttca-cgcttttttgcactcatgtttagaacaaaaaaataacatctcccgcaaaaaatttgaatttttcgacaa 27809159  T
Q  203 gggacggattaaatatgaattttttacgcgccaaaaa 239  Q
    || || ||||||||||||| |||| ||||||| ||||    
T  27809160 ggtacagattaaatatgaacttttaacgcgcctaaaa 27809196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 171 - 246
Target Start/End: Original strand, 42056926 - 42057001
Alignment:
Q  171 atctcccacaaaaaattagaattttccgacgagggacggattaaatatgaattttttacgcgccaaaaagtaaaga 246  Q
    ||||||||||||||||| ||||||| | || ||||| ||||||||||| ||||||| ||||||| |||| ||||||    
T  42056926 atctcccacaaaaaatttgaatttttcaacaagggagggattaaatataaatttttaacgcgcctaaaattaaaga 42057001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 174 - 248
Target Start/End: Original strand, 28109250 - 28109324
Alignment:
Q  174 tcccacaaaaaattagaattttccgacgagggacggattaaatatgaattttttacgcgccaaaaagtaaagaaa 248  Q
    ||||||||||||||||||||||||||| | ||| |||||||||||||| |||| | | |||||||| | ||||||    
T  28109250 tcccacaaaaaattagaattttccgacaacggatggattaaatatgaacttttaatgtgccaaaaactcaagaaa 28109324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 101 - 248
Target Start/End: Complemental strand, 42036249 - 42036101
Alignment:
Q  101 ccgaaaaagtgacttagagattgaatttttccgcgattttttgcaggcatgttagggacataaaaacaacatctcccaca-aaaaattagaattttccga 199  Q
    ||||||||||||| ||||| | |||||||| |   |||||| |||  |||||   ||||||||||||||||||||| ||| |||||||| ||||  || |    
T  42036249 ccgaaaaagtgacatagaggtcgaattttttcattatttttcgcacacatgtctaggacataaaaacaacatctccaacacaaaaattataattacccaa 42036150  T
Q  200 cgagggacggattaaatatgaattttttacgcgccaaaaagtaaagaaa 248  Q
    | ||||| | ||||||||||| ||||| | |||||||||| | ||||||    
T  42036149 caagggatgaattaaatatgattttttaatgcgccaaaaactcaagaaa 42036101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 226
Target Start/End: Complemental strand, 12936673 - 12936594
Alignment:
Q  148 catgttagggacataaaaacaa-catctcccacaaaaaattagaattttccgacgagggacggattaaatatgaattttt 226  Q
    ||||||||| ||||||||| || ||| || | ||||||||||||||||| |||| | ||| |||||||||||||||||||    
T  12936673 catgttaggaacataaaaaaaaacatttcgcgcaaaaaattagaatttttcgacaacggatggattaaatatgaattttt 12936594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 236
Target Start/End: Complemental strand, 2898352 - 2898278
Alignment:
Q  162 aaaaacaacatctcccacaaaaaattagaattttccgacgagggacggattaaatatgaattttttacgcgccaa 236  Q
    ||||| ||||| |||| ||||||||||||||||| |||| |  || ||||||||||||||||||| | |||||||    
T  2898352 aaaaaaaacatttcccgcaaaaaattagaatttttcgacaacagatggattaaatatgaatttttaatgcgccaa 2898278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 239
Target Start/End: Original strand, 16930620 - 16930681
Alignment:
Q  178 acaaaaaattagaattttccgacgagggacggattaaatatgaattttttacgcgccaaaaa 239  Q
    ||||||||||  |||||| |||| ||||||| ||||||||||||||||| ||||||| ||||    
T  16930620 acaaaaaatttaaatttttcgacaagggacgaattaaatatgaatttttaacgcgcctaaaa 16930681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 226
Target Start/End: Complemental strand, 22965068 - 22965004
Alignment:
Q  162 aaaaacaacatctcccacaaaaaattagaattttccgacgagggacggattaaatatgaattttt 226  Q
    ||||| ||||| || ||||||||||||||||||| | || | ||| |||||||||||||||||||    
T  22965068 aaaaaaaacatttctcacaaaaaattagaatttttcaacaacggatggattaaatatgaattttt 22965004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 226
Target Start/End: Original strand, 31064711 - 31064827
Alignment:
Q  105 aaaagtgacttagagattgaatttttccgcgattttttgcaggcatgttagggacataaaaacaacatctcccacaaaaaattagaattttccgacgagg 204  Q
    ||||||||| ||||| |||||||||| | | |||||||||| |||||||  | |    |||| || ||||||||||||||||| |||||||||||| |      
T  31064711 aaaagtgacctagaggttgaattttttcaccattttttgcatgcatgtttagaa----aaaaaaatatctcccacaaaaaatt-gaattttccgacaaca 31064805  T
Q  205 gacggattaaatatgaattttt 226  Q
    ||| | ||||||||||||||||    
T  31064806 gacaggttaaatatgaattttt 31064827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 226
Target Start/End: Original strand, 42057235 - 42057299
Alignment:
Q  162 aaaaacaacatctcccacaaaaaattagaattttccgacgagggacggattaaatatgaattttt 226  Q
    ||||| ||||| |||| ||||||||||||||||  |||| | ||| |||||||||||||||||||    
T  42057235 aaaaaaaacatttcccgcaaaaaattagaatttgtcgacaacggatggattaaatatgaattttt 42057299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 179 - 226
Target Start/End: Complemental strand, 12950796 - 12950749
Alignment:
Q  179 caaaaaattagaattttccgacgagggacggattaaatatgaattttt 226  Q
    ||||||||||||||||| |||| | ||| |||||||||||||||||||    
T  12950796 caaaaaattagaatttttcgacaacggatggattaaatatgaattttt 12950749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 179 - 226
Target Start/End: Complemental strand, 21038367 - 21038320
Alignment:
Q  179 caaaaaattagaattttccgacgagggacggattaaatatgaattttt 226  Q
    ||||||||||||||||| |||| | ||| |||||||||||||||||||    
T  21038367 caaaaaattagaatttttcgacaacggaaggattaaatatgaattttt 21038320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 226
Target Start/End: Original strand, 16930929 - 16930994
Alignment:
Q  162 aaaaacaacatctcccacaaaaaattagaattttccgacga-gggacggattaaatatgaattttt 226  Q
    ||||| ||||| |||| ||||||||||||||||| |||| |  ||| |||||||||||||||||||    
T  16930929 aaaaaaaacatttcccgcaaaaaattagaatttttcgacaattggatggattaaatatgaattttt 16930994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 53 - 264
Target Start/End: Original strand, 5865614 - 5865824
Alignment:
Q  53 tccaattttgtagaaaaaggggttaaatttccctgcaggcataaagtcccgaaaaagtgacttagagattgaatttttccgcgattttttgcaggcatgt 152  Q
    |||| |||||||||||||  ||| || ||||||||| |  ||||||| | |||||  |||| ||||| ||||||||||   |||||  ||||||| | ||    
T  5865614 tccagttttgtagaaaaaatggtcaattttccctgccgatataaagttcagaaaat-tgacctagaggttgaatttttatacgattgcttgcaggaaagt 5865712  T
Q  153 tagggacataaaaacaacatctcccacaaaaaattagaattttccgacgagggacggattaaatatgaattttttacgcgccaaaaagtaaagaaagcgt 252  Q
    |  |||||||||| |||||||| ||||||||||||||||||||||||| ||| |||||||||||||||| |||| | || ||||||| | |||||| |      
T  5865713 ttaggacataaaagcaacatctgccacaaaaaattagaattttccgacaaggtacggattaaatatgaagttttaatgcaccaaaaactcaagaaaccaa 5865812  T
Q  253 gacatcaaaaca 264  Q
     |||||||||||    
T  5865813 aacatcaaaaca 5865824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 101 - 239
Target Start/End: Original strand, 7998693 - 7998831
Alignment:
Q  101 ccgaaaaagtgacttagagattgaatttttccgcgattttttgcaggcatgttagggacataaaaacaacatctcccacaaaaaattagaattttccgac 200  Q
    ||||||||||| | ||||| ||||| |||| | || |||||||||  ||||||  | ||| ||||  ||||| |||||||||||||| ||||||| ||||    
T  7998693 ccgaaaaagtgtcatagaggttgaactttttcacgcttttttgcactcatgtttagaacaaaaaattaacatatcccacaaaaaatttgaatttttcgac 7998792  T
Q  201 gagggacggattaaatatgaattttttacgcgccaaaaa 239  Q
     ||||||||||||||||||||||||| ||||||| ||||    
T  7998793 aagggacggattaaatatgaatttttaacgcgcctaaaa 7998831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 101 - 248
Target Start/End: Complemental strand, 51936177 - 51936030
Alignment:
Q  101 ccgaaaaagtgacttagagattgaatttttccgcgattttttgcaggcatgttagggacataaaaacaacatctcccacaaaaaattagaattttccgac 200  Q
    ||||||||||| | || || ||||| ||||   || |||||||||  ||||||  | ||| ||||| |||||||||||||||||||| ||||||| ||||    
T  51936177 ccgaaaaagtgtcctaaaggttgaacttttttacgcttttttgcactcatgtttagaacaaaaaaataacatctcccacaaaaaatttgaatttttcgac 51936078  T
Q  201 gagggacggattaaatatgaattttttacgcgccaaaaagtaaagaaa 248  Q
     ||||||||||||||||||||||||| || |||| |||| | ||||||    
T  51936077 aagggacggattaaatatgaatttttaacacgcctaaaatttaagaaa 51936030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 105 - 224
Target Start/End: Original strand, 11346778 - 11346896
Alignment:
Q  105 aaaagtgacttagagattgaatttttccgcgattttttgcaggcatgttagggacataaaaacaacatctcccacaaaaaattagaattttccgacgagg 204  Q
    ||||||||| ||||| |||||||||| | || ||||||||||||||||||  ||||| ||||||| || | | ||||||||||||||||||||||  |      
T  11346778 aaaagtgacatagaggttgaattttttcacgtttttttgcaggcatgttaaagacat-aaaacaatatatactacaaaaaattagaattttccgaaaaat 11346876  T
Q  205 gacggattaaatatgaattt 224  Q
    || |||||||||||||||||    
T  11346877 gatggattaaatatgaattt 11346896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 158 - 236
Target Start/End: Complemental strand, 48899281 - 48899203
Alignment:
Q  158 acataaaaacaacatctcccacaaaaaattagaattttccgacgagggacggattaaatatgaattttttacgcgccaa 236  Q
    ||||||||| ||||| |||| ||||||||||||||||| |||| | ||| ||||||||||||||||||| | |||||||    
T  48899281 acataaaaaaaacatttcccgcaaaaaattagaatttttcgacaacggatggattaaatatgaatttttaatgcgccaa 48899203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 162 - 226
Target Start/End: Complemental strand, 51935792 - 51935728
Alignment:
Q  162 aaaaacaacatctcccacaaaaaattagaattttccgacgagggacggattaaatatgaattttt 226  Q
    ||||| ||||| |||| ||||||||||||||||| |||||| ||| |||||||||||||||||||    
T  51935792 aaaaaaaacatttcccgcaaaaaattagaatttttcgacgacggatggattaaatatgaattttt 51935728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 135 - 239
Target Start/End: Complemental strand, 31106619 - 31106518
Alignment:
Q  135 gattttttgcaggcatgttagggacataaaaacaacatctcccacaaaaaattagaattttccgacgagggacggattaaatatgaattttttacgcgcc 234  Q
    |||||||||||||||||||  |||||||||||||   ||||   |||||||||| |||| |||||| ||| ||  ||||||||||||||||| |||| ||    
T  31106619 gattttttgcaggcatgtttaggacataaaaaca---tctcttgcaaaaaattataattgtccgacaaggaacatattaaatatgaatttttaacgcacc 31106523  T
Q  235 aaaaa 239  Q
    |||||    
T  31106522 aaaaa 31106518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 239
Target Start/End: Complemental strand, 34815189 - 34815128
Alignment:
Q  178 acaaaaaattagaattttccgacgagggacggattaaatatgaattttttacgcgccaaaaa 239  Q
    |||||||||| ||||||| |||| | ||||||||||||||||||||||| ||||||| ||||    
T  34815189 acaaaaaatttgaatttttcgacaaaggacggattaaatatgaatttttaacgcgcctaaaa 34815128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 226
Target Start/End: Original strand, 7999067 - 7999135
Alignment:
Q  158 acataaaaacaacatctcccacaaaaaattagaattttccgacgagggacggattaaatatgaattttt 226  Q
    |||||| || ||||| ||||  |||||||||||||||| |||| | ||| |||||||||||||||||||    
T  7999067 acataataaaaacatttccctaaaaaaattagaatttttcgacaacggatggattaaatatgaattttt 7999135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 226
Target Start/End: Complemental strand, 34814871 - 34814819
Alignment:
Q  174 tcccacaaaaaattagaattttccgacgagggacggattaaatatgaattttt 226  Q
    |||| ||||||||||||||||| |||| | ||| |||||||||||||||||||    
T  34814871 tcccgcaaaaaattagaatttttcgacaacggatggattaaatatgaattttt 34814819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 177 - 236
Target Start/End: Original strand, 47357150 - 47357209
Alignment:
Q  177 cacaaaaaattagaattttccgacgagggacggattaaatatgaattttttacgcgccaa 236  Q
    ||||||||||||||||||| |||| | ||| | ||||||||||||||||| | |||||||    
T  47357150 cacaaaaaattagaatttttcgacaacggatgaattaaatatgaatttttaatgcgccaa 47357209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 175
Target Start/End: Complemental strand, 6131653 - 6131579
Alignment:
Q  101 ccgaaaaagtgacttagagattgaatttttccgcgattttttgcaggcatgttagggacataaaaacaacatctc 175  Q
    ||||||||||||| || |  |||||||||| | |||||| ||||| ||||||   ||||||||||||||||||||    
T  6131653 ccgaaaaagtgacctaaatgttgaattttttcacgatttattgcatgcatgtctaggacataaaaacaacatctc 6131579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 231
Target Start/End: Complemental strand, 34089567 - 34089498
Alignment:
Q  162 aaaaacaacatctcccacaaaaaattagaattttccgacgagggacggattaaatatgaattttttacgc 231  Q
    |||| ||||||||  || |||||||| |||||||||||| | ||  ||||||||||||||||||| ||||    
T  34089567 aaaagcaacatcttacataaaaaatttgaattttccgacaaagggtggattaaatatgaatttttaacgc 34089498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 137 - 239
Target Start/End: Complemental strand, 11015055 - 11014953
Alignment:
Q  137 ttttttgcaggcatgttagggacataaaaacaacatctcccacaaaaaattagaattttccgacgagggacggattaaatatgaattttttacgcgccaa 236  Q
    |||||||||  ||||||  | ||| ||||| |||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||| ||||||| |    
T  11015055 ttttttgcactcatgtttagaacaaaaaaataacatctcccacaaaaaatttgaatttttcgacaagggacggattaaatatgaatttttaacgcgccta 11014956  T
Q  237 aaa 239  Q
    |||    
T  11014955 aaa 11014953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 101 - 239
Target Start/End: Complemental strand, 33437227 - 33437090
Alignment:
Q  101 ccgaaaaagtgacttagagattgaatttttccgcgattttttgcaggcatgttagggacataaaaacaacatctcccacaaaaaattagaattttccgac 200  Q
    ||||||||||| | ||||| ||||| |||| | ||||||||||||  ||| ||  | ||| ||||| || ||||||||||||||||| ||||||| ||||    
T  33437227 ccgaaaaagtgtcctagaggttgaaatttttcacgattttttgcactcatatttagaacaaaaaaataaaatctcccacaaaaaatt-gaatttttcgac 33437129  T
Q  201 gagggacggattaaatatgaattttttacgcgccaaaaa 239  Q
      |||||||||||||||||||||||| ||||||| ||||    
T  33437128 aggggacggattaaatatgaatttttaacgcgcctaaaa 33437090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 157 - 239
Target Start/End: Original strand, 41534640 - 41534722
Alignment:
Q  157 gacataaaaacaacatctcccacaaaaaattagaattttccgacgagggacggattaaatatgaattttttacgcgccaaaaa 239  Q
    |||||||||||||||||||||||||||| |||||||||||| || ||||||||||| || || ||||||| | ||||||||||    
T  41534640 gacataaaaacaacatctcccacaaaaacttagaattttccaacaagggacggattgaaaataaatttttaatgcgccaaaaa 41534722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 162 - 239
Target Start/End: Complemental strand, 9617937 - 9617860
Alignment:
Q  162 aaaaacaacatctcccacaaaaaattagaattttccgacgagggacggattaaatatgaattttttacgcgccaaaaa 239  Q
    ||||| ||||| |||||||||||||| ||||||| |||| ||||||||||||||||||||||||| ||||||| ||||    
T  9617937 aaaaataacatatcccacaaaaaatttgaatttttcgacaagggacggattaaatatgaatttttaacgcgcctaaaa 9617860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 162 - 239
Target Start/End: Original strand, 35143368 - 35143445
Alignment:
Q  162 aaaaacaacatctcccacaaaaaattagaattttccgacgagggacggattaaatatgaattttttacgcgccaaaaa 239  Q
    ||||| |||||||||||||||||| | ||||||| |||| ||||||||||||||||||||||||| ||||||| ||||    
T  35143368 aaaaataacatctcccacaaaaaaattgaatttttcgacaagggacggattaaatatgaatttttaacgcgcctaaaa 35143445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 162 - 239
Target Start/End: Complemental strand, 40731969 - 40731892
Alignment:
Q  162 aaaaacaacatctcccacaaaaaattagaattttccgacgagggacggattaaatatgaattttttacgcgccaaaaa 239  Q
    ||||| |||||||||||||||||||| ||||||| |||| |||||| |||||||||||||||||| ||||||| ||||    
T  40731969 aaaaataacatctcccacaaaaaatttgaatttttcgacaagggacagattaaatatgaatttttaacgcgcctaaaa 40731892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 162 - 239
Target Start/End: Complemental strand, 50910920 - 50910843
Alignment:
Q  162 aaaaacaacatctcccacaaaaaattagaattttccgacgagggacggattaaatatgaattttttacgcgccaaaaa 239  Q
    ||||| |||||||||||||||||||| ||||||| |||| ||||||||||||||| ||||||||| ||||||| ||||    
T  50910920 aaaaataacatctcccacaaaaaatttgaatttttcgacaagggacggattaaatctgaatttttaacgcgcctaaaa 50910843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 137 - 233
Target Start/End: Original strand, 38193892 - 38193988
Alignment:
Q  137 ttttttgcaggcatgttagggacataaaaacaacatctcccacaaaaaattagaattttccgacgagggacggattaaatatgaattttttacgcgc 233  Q
    |||||||||  ||||||  | ||| ||||| |||||||||||||||||||| ||||||| |||   |||||||||||||||||||||||| ||||||    
T  38193892 ttttttgcactcatgtttagaacaaaaaaataacatctcccacaaaaaatttgaatttttcgatttgggacggattaaatatgaatttttaacgcgc 38193988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 138 - 226
Target Start/End: Complemental strand, 42577325 - 42577237
Alignment:
Q  138 tttttgcaggcatgttagggacataaaaacaacatctcccacaaaaaattagaattttccgacgagggacggattaaatatgaattttt 226  Q
    ||||| || |||||||| |||||| ||||||| ||||| || || ||||| |||||||||||| ||||||| |||||||||||||||||    
T  42577325 ttttttcacgcatgttaaggacattaaaacaaaatctctcataataaatttgaattttccgacaagggacgaattaaatatgaattttt 42577237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 105 - 239
Target Start/End: Complemental strand, 35218678 - 35218545
Alignment:
Q  105 aaaagtgacttagagattgaatttttccgcgattttttgcaggcatgttagggacataaaaacaacatctcccacaaaaaattagaattttccgacgagg 204  Q
    |||||||||  |||| || ||||||| | |||||||||||| |||||||   |||| ||||||||||||||||||||||  || |||||||| ||| | |    
T  35218678 aaaagtgaccgagaggttaaattttttcacgattttttgcacgcatgtttaagaca-aaaaacaacatctcccacaaaatttttgaattttctgacaaag 35218580  T
Q  205 gacggattaaatatgaattttttacgcgccaaaaa 239  Q
    | |||||| |||||| |||||| ||||||| ||||    
T  35218579 ggcggattgaatatgcatttttaacgcgcctaaaa 35218545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 158 - 239
Target Start/End: Complemental strand, 33436858 - 33436777
Alignment:
Q  158 acataaaaacaacatctcccacaaaaaattagaattttccgacgagggacggattaaatatgaattttttacgcgccaaaaa 239  Q
    ||||||||| ||||| |||| |||||||||| |||||| |||| | ||||||||||||||||||||||| || |||| ||||    
T  33436858 acataaaaaaaacatttcccgcaaaaaattaaaatttttcgacaaaggacggattaaatatgaatttttaacacgcctaaaa 33436777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 180 - 248
Target Start/End: Complemental strand, 2266010 - 2265942
Alignment:
Q  180 aaaaaattagaattttccgacgagggacggattaaatatgaattttttacgcgccaaaaagtaaagaaa 248  Q
    ||||||||||||||||||||| | ||||||||||||||||||||||| | ||| |||||| | ||||||    
T  2266010 aaaaaattagaattttccgacaacggacggattaaatatgaatttttaatgcgtcaaaaactcaagaaa 2265942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 158 - 226
Target Start/End: Complemental strand, 50910600 - 50910532
Alignment:
Q  158 acataaaaacaacatctcccacaaaaaattagaattttccgacgagggacggattaaatatgaattttt 226  Q
    ||||||||| ||||| |||| ||||||||||||||||| |||| | ||| |||||||||||||||||||    
T  50910600 acataaaaaaaacatttcccgcaaaaaattagaatttttcgacaatggatggattaaatatgaattttt 50910532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 162 - 236
Target Start/End: Complemental strand, 9617608 - 9617534
Alignment:
Q  162 aaaaacaacatctcccacaaaaaattagaattttccgacgagggacggattaaatatgaattttttacgcgccaa 236  Q
    ||||| ||||| |||| ||||||||||||||||| |||| | ||| ||||||||||||||||||| | |||||||    
T  9617608 aaaaaaaacatttcccgcaaaaaattagaatttttcgacaacggatggattaaatatgaatttttaatgcgccaa 9617534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 101 - 239
Target Start/End: Complemental strand, 31433351 - 31433213
Alignment:
Q  101 ccgaaaaagtgacttagagattgaatttttccgcgattttttgcaggcatgttagggacataaaaacaacatctcccacaaaaaattagaattttccgac 200  Q
    ||||||||||| | ||||| |||||||||| | ||||||||||||  ||||||    ||| ||||| | |||||||||||||||| |  |||||| ||||    
T  31433351 ccgaaaaagtgtcctagaggttgaattttttcacgattttttgcactcatgtttataacaaaaaaatagcatctcccacaaaaaaattaaatttttcgac 31433252  T
Q  201 gagggacggattaaatatgaattttttacgcgccaaaaa 239  Q
     ||| |||||||||||| || ||||| ||| ||| ||||    
T  31433251 aaggtacggattaaataagattttttaacgtgcctaaaa 31433213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 162 - 236
Target Start/End: Original strand, 35143693 - 35143767
Alignment:
Q  162 aaaaacaacatctcccacaaaaaattagaattttccgacgagggacggattaaatatgaattttttacgcgccaa 236  Q
    ||||| ||||| |||| ||||||||||||||||| |||| | ||| ||||||||||||||||||| | |||||||    
T  35143693 aaaaaaaacatttcccgcaaaaaattagaatttttcgacaacggatggattaaatatgaatttttaatgcgccaa 35143767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 158 - 236
Target Start/End: Complemental strand, 40731657 - 40731579
Alignment:
Q  158 acataaaaacaacatctcccacaaaaaattagaattttccgacgagggacggattaaatatgaattttttacgcgccaa 236  Q
    ||||||||| ||||| |||| |||||||||| |||||| |||| | ||| ||||||||||||||||||| | |||||||    
T  40731657 acataaaaaaaacatttcccgcaaaaaattataatttttcgacaacggatggattaaatatgaatttttaatgcgccaa 40731579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 226
Target Start/End: Complemental strand, 45841756 - 45841686
Alignment:
Q  156 ggacataaaaacaacatctcccacaaaaaattagaattttccgacgagggacggattaaatatgaattttt 226  Q
    |||||||||| ||| ||||| ||||||||||||||||||| | || || ||| ||||||||||||| ||||    
T  45841756 ggacataaaagcaatatctcgcacaaaaaattagaatttttcaacaagagacagattaaatatgaactttt 45841686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 179 - 236
Target Start/End: Complemental strand, 11014687 - 11014630
Alignment:
Q  179 caaaaaattagaattttccgacgagggacggattaaatatgaattttttacgcgccaa 236  Q
    ||||||||||||||||| |||| | ||| ||||||||||||||||||| | |||||||    
T  11014687 caaaaaattagaatttttcgacaacggatggattaaatatgaatttttaatgcgccaa 11014630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 235
Target Start/End: Original strand, 38194246 - 38194319
Alignment:
Q  162 aaaaacaacatctcccacaaaaaattagaattttccgacgagggacggattaaatatgaattttttacgcgcca 235  Q
    ||||| ||||| |||| ||||||||||||||||| |||| | ||| | ||||||||||||||||| | ||||||    
T  38194246 aaaaaaaacatttcccgcaaaaaattagaatttttcgacaacggatgaattaaatatgaatttttaatgcgcca 38194319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 248
Target Start/End: Complemental strand, 35218363 - 35218227
Alignment:
Q  105 aaaagtgacttagagattgaatttttccgcgattttttgcaggcatgttagggacataaaaacaacatctcccacaaaaaattagaattttccgacgagg 204  Q
    ||||||||| ||||  |||||||||| |   |||||||||| | || ||  |||||||||||||   |||||||||| |||||||||||||||    | |    
T  35218363 aaaagtgacatagatgttgaattttttcattattttttgcatgaatctttaggacataaaaaca---tctcccacaagaaattagaattttcc----aag 35218271  T
Q  205 gacggattaaatatgaattttttacgcgccaaaaagtaaagaaa 248  Q
    |||| ||||||||||||||||| |  ||||||||| | ||||||    
T  35218270 gacgaattaaatatgaatttttaatacgccaaaaactcaagaaa 35218227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 236
Target Start/End: Complemental strand, 31432965 - 31432903
Alignment:
Q  174 tcccacaaaaaattagaattttccgacgagggacggattaaatatgaattttttacgcgccaa 236  Q
    |||| ||||||||||||||||| |||| | |||  |||||| ||||||||||| |||||||||    
T  31432965 tcccgcaaaaaattagaatttttcgacaacggatagattaagtatgaatttttaacgcgccaa 31432903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 236
Target Start/End: Original strand, 52074358 - 52074420
Alignment:
Q  174 tcccacaaaaaattagaattttccgacgagggacggattaaatatgaattttttacgcgccaa 236  Q
    |||| ||||||||| ||||||| |||| | ||| ||||||||||||||||||| | |||||||    
T  52074358 tcccgcaaaaaatttgaatttttcgacaacggatggattaaatatgaatttttaatgcgccaa 52074420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 162 - 239
Target Start/End: Complemental strand, 47641687 - 47641610
Alignment:
Q  162 aaaaacaacatctcccacaaaaaattagaattttccgacgagggacggattaaatatgaattttttacgcgccaaaaa 239  Q
    ||||| |||||||||||||||||||| ||||||| |||| | ||||||||||||||||||||||| ||||||| ||||    
T  47641687 aaaaataacatctcccacaaaaaatttgaatttttcgacaacggacggattaaatatgaatttttaacgcgcctaaaa 47641610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 105 - 239
Target Start/End: Complemental strand, 11434352 - 11434219
Alignment:
Q  105 aaaagtgacttagagattgaatttttccgcgattttttgcaggcatgttagggacataaaaacaacatctcccacaaaaaattagaattttccgacgagg 204  Q
    ||||||||| ||||| ||||  |||| | | ||||||||||||||| ||  ||||||||||| |||||||   ||||||||||| ||||||||||| |||    
T  11434352 aaaagtgacctagaggttgagctttttcacaattttttgcaggcatttttaggacataaaaa-aacatctatgacaaaaaattataattttccgacaagg 11434254  T
Q  205 gacggattaaatatgaattttttacgcgccaaaaa 239  Q
    | | ||||||||||||||||||  | |||||||||    
T  11434253 ggcagattaaatatgaatttttagctcgccaaaaa 11434219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 162 - 239
Target Start/End: Original strand, 37526144 - 37526221
Alignment:
Q  162 aaaaacaacatctcccacaaaaaattagaattttccgacgagggacggattaaatatgaattttttacgcgccaaaaa 239  Q
    ||||| ||||| ||||||||||||||||||||||||||| | |||  |||||||||||||||||| | ||||||||||    
T  37526144 aaaaaaaacatttcccacaaaaaattagaattttccgacaacggattgattaaatatgaatttttaatgcgccaaaaa 37526221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 115 - 236
Target Start/End: Complemental strand, 54921823 - 54921702
Alignment:
Q  115 tagagattgaatttttccgcgattttttgcaggcatgttagggacataaaaacaacatctcccacaaaaaattagaattttccgacgagggacggattaa 214  Q
    |||||||||||||||| |   |||||||| |  ||| ||| | ||||||||| ||||| | |||||||||||||||||||| |||| | ||| |||||||    
T  54921823 tagagattgaattttttcattattttttgtacacatattaagaacataaaaaaaacattttccacaaaaaattagaatttttcgacaacggatggattaa 54921724  T
Q  215 atatgaattttttacgcgccaa 236  Q
    |||||||||||| | |||||||    
T  54921723 atatgaatttttaatgcgccaa 54921702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 162 - 239
Target Start/End: Complemental strand, 54922092 - 54922015
Alignment:
Q  162 aaaaacaacatctcccacaaaaaattagaattttccgacgagggacggattaaatatgaattttttacgcgccaaaaa 239  Q
    ||||| ||| |||||||||||||||| ||||||| |||| ||||||| ||||||||||||||||| ||||||| ||||    
T  54922092 aaaaataacttctcccacaaaaaatttgaatttttcgacaagggacgaattaaatatgaatttttaacgcgcctaaaa 54922015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 105 - 244
Target Start/End: Complemental strand, 4811864 - 4811724
Alignment:
Q  105 aaaagtgacttagagattgaatttttccgcgattttttgcaggcatgttagggacataaaaacaacatctcccacaaaaaa--ttagaattttccgacga 202  Q
    ||||||||| ||||| ||||||||||    ||||||||   ||||||||  ||||||||| | ||||||||||||||||||  |||||||||||| || |    
T  4811864 aaaagtgacctagaggttgaattttttaatgattttttattggcatgtttaggacataaaga-aacatctcccacaaaaaaaattagaattttccaacca 4811766  T
Q  203 gggacggattaaatatgaattttttacgcgccaaaaagtaaa 244  Q
    | ||| |||| ||||||||||||| ||||| |||||| ||||    
T  4811765 gagacagattcaatatgaatttttaacgcgtcaaaaactaaa 4811724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 158 - 236
Target Start/End: Complemental strand, 47641369 - 47641291
Alignment:
Q  158 acataaaaacaacatctcccacaaaaaattagaattttccgacgagggacggattaaatatgaattttttacgcgccaa 236  Q
    ||||||||| ||||| |||| ||||||||||||||||| |||| | ||| ||||||||||||||||||| | |||||||    
T  47641369 acataaaaaaaacatttcccgcaaaaaattagaatttttcgacaacggatggattaaatatgaatttttaatgcgccaa 47641291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 104 - 232
Target Start/End: Complemental strand, 45266225 - 45266096
Alignment:
Q  104 aaaaagtgacttagagattgaatttttccgcgattttttgcaggcatgttagggacataaaaacaacatctcccacaaaaaa-ttagaattttccgacga 202  Q
    |||||||| | ||||| ||||| |||| |  | |||||||||  ||||||  | ||| ||||| |||||||||||||||||| || ||| ||| |||| |    
T  45266225 aaaaagtgtcctagaggttgaaatttttcatgcttttttgcactcatgtttagaacaaaaaaataacatctcccacaaaaaaatttgaacttttcgacaa 45266126  T
Q  203 gggacggattaaatatgaattttttacgcg 232  Q
    |||||||||||||||||||||||| |||||    
T  45266125 gggacggattaaatatgaatttttaacgcg 45266096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 101 - 239
Target Start/End: Complemental strand, 17074269 - 17074131
Alignment:
Q  101 ccgaaaaagtgacttagagattgaatttttccgcgattttttgcaggcatgttagggacataaaaacaacatctcccacaaaaaattagaattttccgac 200  Q
    ||||||||| | | ||||| ||||| |||| |  |||||||||||   |||||  | ||| ||||| |||||||||||||||||||| |||| || | ||    
T  17074269 ccgaaaaagcgtcctagaggttgaactttttcaagattttttgcactaatgttcagaacaaaaaaataacatctcccacaaaaaatttgaatgtttcaac 17074170  T
Q  201 gagggacggattaaatatgaattttttacgcgccaaaaa 239  Q
     |||||  |||||||||||||||||| ||||||| ||||    
T  17074169 aagggaatgattaaatatgaatttttaacgcgcctaaaa 17074131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 109 - 234
Target Start/End: Complemental strand, 26267885 - 26267757
Alignment:
Q  109 gtgacttagagattgaatttttccgcgattttttgcaggcatgttagggacataaaaacaacatctcccacaaaaaatta---gaattttccgacgaggg 205  Q
    ||||| ||||| |||||||||| | ||||||||||||  ||||||  ||||| ||||  |||||||||||||| |||  |   ||||||| |||| ||||    
T  26267885 gtgacctagaggttgaattttttcacgattttttgcactcatgtttaggacaaaaaaggaacatctcccacaagaaaaaaaatgaatttttcgacaaggg 26267786  T
Q  206 acggattaaatatgaattttttacgcgcc 234  Q
    ||  ||||||||||||||||| |||||||    
T  26267785 acatattaaatatgaatttttaacgcgcc 26267757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 231
Target Start/End: Original strand, 37525449 - 37525574
Alignment:
Q  105 aaaagtgacttagagattgaatttttccgcgattttttgcaggcatgttagggacataaaaacaacatctcccacaaaaaattagaattttccgacgagg 204  Q
    ||||||| | ||||| |||||||||| | ||||||||| || |||| ||  ||||| |||||||| |||||  | |||||||| ||||||| |||| ||     
T  37525449 aaaagtggcctagaggttgaattttttcacgatttttttcacgcatattttggacaaaaaaacaatatctcttaaaaaaaatt-gaatttttcgacaaga 37525547  T
Q  205 gacggattaaatatgaattttttacgc 231  Q
    || | ||||||||||||||||| ||||    
T  37525548 gatgaattaaatatgaatttttaacgc 37525574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 226
Target Start/End: Complemental strand, 48097747 - 48097679
Alignment:
Q  158 acataaaaacaacatctcccacaaaaaattagaattttccgacgagggacggattaaatatgaattttt 226  Q
    ||||||||| | ||| |||| |||||||||||||||||  ||| | ||| |||||||||||||||||||    
T  48097747 acataaaaaaatcatttcccgcaaaaaattagaattttttgacaacggatggattaaatatgaattttt 48097679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 236
Target Start/End: Complemental strand, 45265840 - 45265766
Alignment:
Q  162 aaaaacaacatctcccacaaaaaattagaattttccgacgagggacggattaaatatgaattttttacgcgccaa 236  Q
    ||||| ||||| |||  |||||||||| |||||| |||  ||||| ||||||||||||||||||| | |||||||    
T  45265840 aaaaaaaacatttcctgcaaaaaattataatttttcgataagggatggattaaatatgaatttttaatgcgccaa 45265766  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 226
Target Start/End: Original strand, 40368623 - 40368672
Alignment:
Q  177 cacaaaaaattagaattttccgacgagggacggattaaatatgaattttt 226  Q
    |||||||||||||| ||||||||| ||||||| | ||| |||||||||||    
T  40368623 cacaaaaaattagatttttccgactagggacgaactaattatgaattttt 40368672  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 248
Target Start/End: Original strand, 314291 - 314359
Alignment:
Q  180 aaaaaattagaattttccgacgagggacggattaaatatgaattttttacgcgccaaaaagtaaagaaa 248  Q
    ||||||||||||||||||||  | ||| ||||||||||| ||||||| | ||| |||||| | ||||||    
T  314291 aaaaaattagaattttccgaaaacggatggattaaatattaatttttaatgcgtcaaaaactcaagaaa 314359  T

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Target: scaffold0004 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 162 - 232
Target Start/End: Original strand, 127746 - 127816
Alignment:
Q  162 aaaaacaacatctcccacaaaaaattagaattttccgacgagggacggattaaatatgaattttttacgcg 232  Q
    ||||| |||||||||||||||||||| ||||||| |||| | ||||||||||||||||||||||| |||||    
T  127746 aaaaataacatctcccacaaaaaatttgaatttttcgacaaaggacggattaaatatgaatttttaacgcg 127816  T

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Target: chr7 (Bit Score: 47; Significance: 7e-18; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 137 - 239
Target Start/End: Complemental strand, 48556446 - 48556344
Alignment:
Q  137 ttttttgcaggcatgttagggacataaaaacaacatctcccacaaaaaattagaattttccgacgagggacggattaaatatgaattttttacgcgccaa 236  Q
    |||||||||  ||||||  | ||| ||||| ||||| |||||||||||||| ||||||| |||| |||||| |||||||||||||||||| ||||||| |    
T  48556446 ttttttgcactcatgtttagaacaaaaaaataacatgtcccacaaaaaatttgaatttttcgacaagggacagattaaatatgaatttttaacgcgccta 48556347  T
Q  237 aaa 239  Q
    |||    
T  48556346 aaa 48556344  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 101 - 246
Target Start/End: Original strand, 31602225 - 31602370
Alignment:
Q  101 ccgaaaaagtgacttagagattgaatttttccgcgattttttgcaggcatgttagggacataaaaacaacatctcccacaaaaaattagaattttccgac 200  Q
    ||||||||||| | ||||| || || || | | || |||||||||  ||||||  | ||| ||||| |||||||||||||||||||| |||||||  |||    
T  31602225 ccgaaaaagtgtcctagaggttaaacttcttcacgcttttttgcactcatgtttagaacaaaaaaataacatctcccacaaaaaatttgaattttttgac 31602324  T
Q  201 gagggacggattaaatatgaattttttacgcgccaaaaagtaaaga 246  Q
     ||| ||||||||||||||||||||| ||||| | |||| ||||||    
T  31602325 aaggaacggattaaatatgaatttttaacgcgtctaaaattaaaga 31602370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 100 - 226
Target Start/End: Original strand, 25694547 - 25694673
Alignment:
Q  100 cccgaaaaagtgacttagagattgaatttttccgcgattttttgcaggcatgttagggacataaaaacaacatctcccacaaaaaattagaattttccga 199  Q
    |||||||||||| | ||||| ||||| |||| | || |||||| ||  ||||||  | ||| ||||| |||||||||||||||||| | ||||||| |||    
T  25694547 cccgaaaaagtgtcctagaggttgaactttttcacgctttttttcactcatgtttagaacaaaaaaataacatctcccacaaaaaaattgaatttttcga 25694646  T
Q  200 cgagggacggattaaatatgaattttt 226  Q
    | | ||||| |||||||||||||||||    
T  25694647 caacggacgaattaaatatgaattttt 25694673  T

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Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 162 - 239
Target Start/End: Original strand, 47610546 - 47610623
Alignment:
Q  162 aaaaacaacatctcccacaaaaaattagaattttccgacgagggacggattaaatatgaattttttacgcgccaaaaa 239  Q
    ||||| |||||||||| ||||||||| ||||||| |||| ||||||  ||||||||||||||||| ||||||| ||||    
T  47610546 aaaaataacatctcccgcaaaaaatttgaatttttcgacaagggacaaattaaatatgaatttttaacgcgcctaaaa 47610623  T

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Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 136 - 225
Target Start/End: Original strand, 47610845 - 47610934
Alignment:
Q  136 attttttgcaggcatgttagggacataaaaacaacatctcccacaaaaaattagaattttccgacgagggacggattaaatatgaatttt 225  Q
    ||||||||||  ||| ||| | ||||||||| || || |||||||||||||||||||||| |||| | ||| ||||||||||||||||||    
T  47610845 attttttgcacacatattaagaacataaaaaaaatatttcccacaaaaaattagaatttttcgacaacggatggattaaatatgaatttt 47610934  T

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Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 174 - 248
Target Start/End: Original strand, 25694939 - 25695013
Alignment:
Q  174 tcccacaaaaaattagaattttccgacgagggacggattaaatatgaattttttacgcgccaaaaagtaaagaaa 248  Q
    |||||||||||||||||||||| |||| |  || ||||||||||||||||||| | |||||||||| | ||||||    
T  25694939 tcccacaaaaaattagaatttttcgacaatagatggattaaatatgaatttttaatgcgccaaaaactcaagaaa 25695013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 105 - 248
Target Start/End: Complemental strand, 35248707 - 35248564
Alignment:
Q  105 aaaagtgacttagagattgaatttttccgcgattttttgcaggcatgttagggacataaaaacaacatctccca-caaaaaattagaattttccgacgag 203  Q
    ||||||||| ||||  |||||||||||  | ||| |||||| |||||||  |||| ||||||||||||||||||  |||||| | ||||||| ||||  |    
T  35248707 aaaagtgacctagaagttgaatttttca-caattgtttgcacgcatgtttaggacctaaaaacaacatctcccagaaaaaaaattgaatttttcgacctg 35248609  T
Q  204 ggacggattaaatatgaattttttacgcgccaaaaagtaaagaaa 248  Q
    | ||| ||||||||||||||||| |||| || |||| | ||||||    
T  35248608 gaacgaattaaatatgaatttttaacgcacctaaaactcaagaaa 35248564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 226
Target Start/End: Original strand, 31602608 - 31602676
Alignment:
Q  158 acataaaaacaacatctcccacaaaaaattagaattttccgacgagggacggattaaatatgaattttt 226  Q
    ||||| ||| ||||| |||  ||||||||||||||||| |||| | ||| |||||||||||||||||||    
T  31602608 acatagaaaaaacatttcctgcaaaaaattagaatttttcgacaacggatggattaaatatgaattttt 31602676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 226
Target Start/End: Complemental strand, 14815714 - 14815656
Alignment:
Q  168 aacatctcccacaaaaaattagaattttccgacgagggacggattaaatatgaattttt 226  Q
    ||||| |||| ||||||||||||||||| | || | ||| |||||||||||||||||||    
T  14815714 aacatttcccgcaaaaaattagaatttttcaacaatggatggattaaatatgaattttt 14815656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 226
Target Start/End: Complemental strand, 15262709 - 15262651
Alignment:
Q  168 aacatctcccacaaaaaattagaattttccgacgagggacggattaaatatgaattttt 226  Q
    ||||| |||| ||||||||||||||||| | || | ||| |||||||||||||||||||    
T  15262709 aacatttcccgcaaaaaattagaatttttcaacaatggatggattaaatatgaattttt 15262651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 200
Target Start/End: Original strand, 25609417 - 25609478
Alignment:
Q  138 tttttgcaggcatgttagggacataaaaacaacatctcccacaaaaaattagaattttccgac 200  Q
    ||||||||  ||||||| ||||||| ||| ||||| |||||||||||||||||| ||||||||    
T  25609417 tttttgcacacatgttaaggacatagaaa-aacatttcccacaaaaaattagaaatttccgac 25609478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 178 - 215
Target Start/End: Complemental strand, 22929200 - 22929163
Alignment:
Q  178 acaaaaaattagaattttccgacgagggacggattaaa 215  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  22929200 acaaaaaatttgaatttttcgacgagggacggattaaa 22929163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 228
Target Start/End: Original strand, 12224332 - 12224380
Alignment:
Q  180 aaaaaattagaattttccgacgagggacggattaaatatgaatttttta 228  Q
    ||||||||||||||||||||  |||||  |||||| |||||||||||||    
T  12224332 aaaaaattagaattttccgattagggaatgattaattatgaatttttta 12224380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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