View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8427_low_25 (Length: 232)
Name: NF8427_low_25
Description: NF8427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8427_low_25 |
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Alignment Details
Target: chr6 (Bit Score: 166; Significance: 5e-89; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 15 - 208
Target Start/End: Complemental strand, 12053883 - 12053690
Alignment:
| Q |
15 |
attctagatgcttgcatgctcatattgcccttaaaagcggaatacactttacaccctcaaaagcaaatttgatcgtaaaaatcacagtaaatgtgtccaa |
114 |
Q |
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| T |
12053883 |
attctagataattgcatgctcatattgcccttaaaagcggaagacactttacaccctcaaaagcaaatttgatcgtaaaaatcacagtaaatgtgtccaa |
12053784 |
T |
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| Q |
115 |
aaaataaatcaatttacattcaacttcctcataaccaaaataatttaattcaaacccaattttcttcactgcagaatcaaacatacacaaagtt |
208 |
Q |
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| T |
12053783 |
aaaataaatcaatttacattcaacttcctcataaccaaaaaaatttaattcaaacccaattttcttctaagcagaatcaaacatacacaaagtt |
12053690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 45 - 208
Target Start/End: Original strand, 20630668 - 20630831
Alignment:
| Q |
45 |
ttaaaagcggaatacactttacaccctcaaaagcaaatttgatcgtaaaaatcacagtaaatgtgtccaaaaaataaatcaatttacattcaacttcctc |
144 |
Q |
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| T |
20630668 |
ttaaaagtggaagacactttacacactcaaaagtaaatttgatcgtaaaaatcacagtaaatgtgtgcaaaaaataaatcaatttacattcaacttcctc |
20630767 |
T |
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| Q |
145 |
ataaccaaaataatttaattcaaacccaattttcttcactgcagaatcaaacatacacaaagtt |
208 |
Q |
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| T |
20630768 |
ataaccaaaataatttaattcaaacccaattttcttcactgcagaatcaaacatacacaaagtt |
20630831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 104 - 203
Target Start/End: Original strand, 20607269 - 20607368
Alignment:
| Q |
104 |
aatgtgtccaaaaaataaatcaatttacattcaacttcctcataaccaaaataatttaattcaaacccaattttcttcactgcagaatcaaacatacaca |
203 |
Q |
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| T |
20607269 |
aatgtatctaaaacataaatcaatttacattcaacttcctctaaaccaaaataaattaattcaaaaccacttttcatcattgcagaatcaagcatacaca |
20607368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 15 - 49
Target Start/End: Original strand, 20630133 - 20630167
Alignment:
| Q |
15 |
attctagatgcttgcatgctcatattgcccttaaa |
49 |
Q |
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| T |
20630133 |
attctagatgcttgcatgctcatattgcccttaaa |
20630167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 157
Target Start/End: Original strand, 20660361 - 20660429
Alignment:
| Q |
89 |
gtaaaaatcacagtaaatgtgtccaaaaaataaatcaatttacattcaacttcctcataaccaaaataa |
157 |
Q |
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| T |
20660361 |
gtaaaaatcattgtgaatgtatctaaaacataaatcactttacattcaacttcctcgtaatcaaaataa |
20660429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 20660447 - 20660493
Alignment:
| Q |
162 |
attcaaacccaattttcttcactgcagaatcaaacatacacaaagtt |
208 |
Q |
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| T |
20660447 |
attcaaaaccaattttcatcactgcagaatcaagcacacacaaagtt |
20660493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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