View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8427_low_27 (Length: 214)
Name: NF8427_low_27
Description: NF8427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8427_low_27 |
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Alignment Details
Target: chr6 (Bit Score: 111; Significance: 3e-56; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 79 - 201
Target Start/End: Original strand, 20631190 - 20631312
Alignment:
| Q |
79 |
tgaagttaatcaataagactacataatatcttgttagatgattttttattgtttgtcaactatcaaatagagcatttgattaatgatacatggacctcaa |
178 |
Q |
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| T |
20631190 |
tgaagttaatcaacaagactacataatatcttgttagatgattttttattgtttgtcaactatcaaatagagcaattgattaatgatacatggacctcaa |
20631289 |
T |
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| Q |
179 |
ttcataatacgaactatatatgt |
201 |
Q |
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| T |
20631290 |
ttcataatatgaactatatatgt |
20631312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 20631065 - 20631170
Alignment:
| Q |
1 |
aagtttgtgcagagaattcaaataggacccaaaaaacatttttgggaaaaaagtagagggtgaaaatactctttcttttgaagttaatcaataagactac |
100 |
Q |
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| T |
20631065 |
aagtttgtgcagagaattcaaataggacccaaaaaacatttttgggaagaaagtagagggtgaaaatactctttcttttgaagttaatcaataagactac |
20631164 |
T |
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| Q |
101 |
ataata |
106 |
Q |
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||||| |
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| T |
20631165 |
gtaata |
20631170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 120 - 202
Target Start/End: Original strand, 20608184 - 20608266
Alignment:
| Q |
120 |
ttttttattgtttgtcaactatcaaatagagcatttgattaatgatacatggacctcaattcataatacgaactatatatgtg |
202 |
Q |
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| T |
20608184 |
ttttgtattgtttgtcaactatcaaatagagcaattgattaatgatacatggacctcaatttataatacgaactgtatgtgtg |
20608266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 20607853 - 20607970
Alignment:
| Q |
1 |
aagtttgtgcagagaattcaaataggacccaaaaaacatttt---tgggaaaaaagtagagggtgaaaatactctttcttt---------tgaagttaat |
88 |
Q |
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| T |
20607853 |
aagtttgcgcagagaattcaaataggacagaaaaa-cattttacttgggaagcaagtaaagggtgaaaatactatttctctcaagtttgttgaagttaat |
20607951 |
T |
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| Q |
89 |
caataagactacataatat |
107 |
Q |
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| T |
20607952 |
caataagactacataatat |
20607970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 76 - 113
Target Start/End: Original strand, 20607986 - 20608023
Alignment:
| Q |
76 |
ttttgaagttaatcaataagactacataatatcttgtt |
113 |
Q |
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| T |
20607986 |
ttttgaagttaaccaataagaatacataatatcttgtt |
20608023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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