View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8427_low_4 (Length: 543)
Name: NF8427_low_4
Description: NF8427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8427_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 178; Significance: 9e-96; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 9e-96
Query Start/End: Original strand, 24 - 255
Target Start/End: Original strand, 44000468 - 44000697
Alignment:
| Q |
24 |
atacttattttttacatattgggtttaggttacaattacatttacggcggtagnnnnnnnnnnnttaactattacaataaacccccagtacttaaaaaat |
123 |
Q |
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| T |
44000468 |
atacttattttttacatattgggtttaggttacaattacatttacggcggtagaaaaaaaaa--ttaactattacaataaaccccccgtacttaaaaaat |
44000565 |
T |
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| Q |
124 |
tgttgtgttccccgatagatattttttgggattaaaatttgattgggttgcaacttatgctaaatattttttctttgaaaatatgtatgagcaatttaag |
223 |
Q |
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| T |
44000566 |
tgttgtgttccccgatagatattttttgggattaaaatttgattgggttgaaacttatgctaaatattttttctttgaaaatatgtatgagcaatttaag |
44000665 |
T |
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| Q |
224 |
ggattattacctataaaacctaaatcctagtt |
255 |
Q |
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| T |
44000666 |
ggattatcacctataaaacctaaaccctagtt |
44000697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 316 - 528
Target Start/End: Original strand, 44000695 - 44000906
Alignment:
| Q |
316 |
gtttttataacaacattcaccgttctgtttctctcgtactgttgctccatgccgctgcgtttctctacctccgctggaaccctatcatcaccttctctac |
415 |
Q |
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| T |
44000695 |
gtttttataacaacattcatcgttctgtttctctcgtactgttgctccatgccactgcgtttctctacctccgctggaatcctatcatcaccttcgctac |
44000794 |
T |
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| Q |
416 |
ccactcttccgtctgaactcgtggaagaaattttgtgtaggttaccggtgaagatactcctgcaattccgatgcatctgcaagtcctggaaatctctaat |
515 |
Q |
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| T |
44000795 |
ccattcttccgtctgaactcg-agaagaaattttgtgtaggttaccggtgaagatactcctgcaactccgatgcatctgcaagtcctggaaatctctaat |
44000893 |
T |
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| Q |
516 |
ttcaaatgatagt |
528 |
Q |
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| T |
44000894 |
ttcaaatgatagt |
44000906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 413 - 525
Target Start/End: Original strand, 43991233 - 43991345
Alignment:
| Q |
413 |
tacccactcttccgtctgaactcgtggaagaaattttgtgtaggttaccggtgaagatactcctgcaattccgatgcatctgcaagtcctggaaatctct |
512 |
Q |
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| T |
43991233 |
tacccactcttccgtttgaacttgtggaagaaatcctgtgtagattaccggtgaagatactcatgcaactccaatgcatctgcaagtcctggaaatctct |
43991332 |
T |
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| Q |
513 |
aatttcaaatgat |
525 |
Q |
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| T |
43991333 |
tatctcgaatgat |
43991345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 412 - 515
Target Start/End: Original strand, 43996812 - 43996915
Alignment:
| Q |
412 |
ctacccactcttccgtctgaactcgtggaagaaattttgtgtaggttaccggtgaagatactcctgcaattccgatgcatctgcaagtcctggaaatctc |
511 |
Q |
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||||| ||||||| ||||||||| ||||||||||| ||||| |||||||||||||||||||| ||||| |||||||||| ||||||||||||||| ||| |
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| T |
43996812 |
ctacctactcttcggtctgaacttgtggaagaaatattgtgcaggttaccggtgaagatacttctgcagctccgatgcatatgcaagtcctggaaaactc |
43996911 |
T |
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| Q |
512 |
taat |
515 |
Q |
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|||| |
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| T |
43996912 |
taat |
43996915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 391 - 525
Target Start/End: Complemental strand, 43687183 - 43687049
Alignment:
| Q |
391 |
ggaaccctatcatcaccttctctacccactcttccgtctgaactcgtggaagaaattttgtgtaggttaccggtgaagatactcctgcaattccgatgca |
490 |
Q |
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| T |
43687183 |
ggaaccctaacatcaccattactatcctttcttccgttcgaccttgtggaagaaatcttgtgtagactactggtgaagatacttttgcagctcaaatgca |
43687084 |
T |
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| Q |
491 |
tctgcaagtcctggaaatctctaatttcaaatgat |
525 |
Q |
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| T |
43687083 |
tctgcaagtcctggaaatctgtaatctcgaatgat |
43687049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 460 - 512
Target Start/End: Complemental strand, 7432894 - 7432842
Alignment:
| Q |
460 |
ccggtgaagatactcctgcaattccgatgcatctgcaagtcctggaaatctct |
512 |
Q |
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| T |
7432894 |
ccggtgaagcttctccttcaattgcgatgcatctgcaagtcgtggaattctct |
7432842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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