View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8427_low_6 (Length: 518)
Name: NF8427_low_6
Description: NF8427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8427_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 459; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 18 - 500
Target Start/End: Complemental strand, 34922476 - 34921994
Alignment:
| Q |
18 |
catcatagctggttcttgtggctatattgcaccaggttagcattttaatttcttcattttatttcatttttctgcatatgttctatgtagtcctactttt |
117 |
Q |
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| T |
34922476 |
catcatagctggttcttgtggctatattgcaccaggttagcattttaatttcttcattttatttcatttttctgcatatgttctatgtagtcctactttt |
34922377 |
T |
|
| Q |
118 |
taacaacctgaggtaaatttagtgttagtacttgtgttcttgtgcttgactcatagtatatggcttattagacactacaagtcacaatgttagtatcatg |
217 |
Q |
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| T |
34922376 |
taacaacctgaggtaaatttagtgttagtacttgtgttcttgtgcttgactcatagtatatggcttattaggaactacaagtcacaatgttagtatcatg |
34922277 |
T |
|
| Q |
218 |
catgggcaatgctttcattatctttgttgcttggtgaacagtgttctatttttgttggtattctagctacttggtattattatatagtatggatatatca |
317 |
Q |
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|||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34922276 |
catgggcaatgctttcattatctttgttgcttagtgaaaagtgttctgtttttgttggtattctagctacttggtattattatatagtatggatatatca |
34922177 |
T |
|
| Q |
318 |
tggtgtctaagtatctgttttctagcatattttaattttcttttgaactttacaatacaattattcacttagtttcatatgatacacattttttcctatt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
34922176 |
tggtgtctaagtatctgttttctagcatattttaattttcttttgaactttacaatacaattatccacttagtttcatatgatacacattttttcctatt |
34922077 |
T |
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| Q |
418 |
aaaagtttcctaatgtttagtatctctgtttctttagatacaaactgacatgatcccatttctcctgcagaatatgcatacac |
500 |
Q |
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| T |
34922076 |
aaaagtttcctaatgtttagtatctctgtttctttagatacaaactgacatgatcccatttctcctgcagaatatgcatacac |
34921994 |
T |
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