View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8427_low_7 (Length: 473)
Name: NF8427_low_7
Description: NF8427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8427_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 19 - 465
Target Start/End: Complemental strand, 44440312 - 44439894
Alignment:
| Q |
19 |
ctaagttatattacaattttaaatttctaaatgttaggtccaaagcactctaaatcaaaatcgaaaacaacacaattgaataaaattggataaattttaa |
118 |
Q |
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| T |
44440312 |
ctaagttatattacaattttaaatttctaaatgttaggtccaaagcaatctaaatcaaaat---------------tgaataaaattggataaattttaa |
44440228 |
T |
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| Q |
119 |
tctcgtcatgtgaaatatttcagattctttttcacgaatttgataatatttcacgaaatcaatacatgctannnnnnnnnnnnnnnnnatcaaatgaaaa |
218 |
Q |
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| T |
44440227 |
tatcgtgatgtgaaatatttcagattctttt-cacgaattggataatatt-cacgaaatcaatacatgttattttttattttttttttatcaaatgaaaa |
44440130 |
T |
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| Q |
219 |
ccaatccaatctagtcggannnnnnnnnaaagaaatcgtccatttggtctgtgtgtgatttgaatcttcaaatcaacaattgttttactttaaaaccgat |
318 |
Q |
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| T |
44440129 |
ccaatccaatctagtcggattttttttgaaagaaattgtccatttggtctgtgtgtgatttgaatctttaaatcaacaattgttttactttaaaaccgat |
44440030 |
T |
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| Q |
319 |
cttaaccgcattacgattaccgtgtactccaaaccaatataatgatctcaaataactttagacttagcattatgtcagcccttccgatatggattgatca |
418 |
Q |
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| T |
44440029 |
cttaaccgcat----------gtgtactccaaaccaatataatgatctcaaataactttagacttagcattatgtcggcacttccgatatggattgatca |
44439940 |
T |
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| Q |
419 |
atataaaggaacggttaatgaagtatacaaggaaagagataacacga |
465 |
Q |
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| T |
44439939 |
acataatggaacggttaat-aagtatacaaggaaagagataacacga |
44439894 |
T |
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