View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8427_low_8 (Length: 431)
Name: NF8427_low_8
Description: NF8427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8427_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 385; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 1 - 413
Target Start/End: Original strand, 6503974 - 6504386
Alignment:
| Q |
1 |
ttcatcgtcaacaactacagcctccgatcgccggagatccgaatacgatcctctgcttctcaaccggttaaacgaagacagactagaattctcataccaa |
100 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6503974 |
ttcatcgtcaacaactaccgcctccgatcgccggagatccgaatacgatcctctgcttctcaaccggttaaacgaagacagactagaattctcataccaa |
6504073 |
T |
|
| Q |
101 |
aacggcggtgtttcactttcggttactggtttcacctccggttgccggaaagtttcaccggaagtaaccgtctcccggtgaaattcatcttcatcttgaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6504074 |
aacggcggtgtttcactttcggttactggtttcacctccggttgccggaaagtttcaccggaagtaaccgtctcccggtgaaattcatcttcatcttgaa |
6504173 |
T |
|
| Q |
201 |
atctcggataccgataacgaaaatttacacgagtatcatcataaaaccggtaccgataatctccgccatcagcaaccaccacctccggtcgccggagatc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||| |||||||| |
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| T |
6504174 |
atctcggataccgataacgaaaatttacacgagtatcatcataaaaccggtaccgatcatcgccgccgtcagcaaccaccacctccggtcgacggagatc |
6504273 |
T |
|
| Q |
301 |
gggatacgatccaccgcttctcaacctattaaacaccgatggattttcattaccataccaaaacggcggcgtttcagtgtcaggattcgaaaagcttcta |
400 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6504274 |
cggatacgatccaccgcttctcaaccgattaaacaccgatggattttcattaccataccaaaacggcggcgtttcagtgtcaggattcgaaaagcttcta |
6504373 |
T |
|
| Q |
401 |
cgatgagtattat |
413 |
Q |
| |
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| T |
6504374 |
cgatgagtattat |
6504386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 125 - 326
Target Start/End: Original strand, 6503843 - 6504038
Alignment:
| Q |
125 |
actggtttcacctccggttgccggaaagtttcaccggaagtaaccgtctcccggtgaaattcatcttcatcttgaaatctcggataccgataacgaaaat |
224 |
Q |
| |
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|||||||||||||||||| ||||| || |||||||||||||||| | ||||||||||||||||||||| || ||||| | | ||||||| | || | |
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| T |
6503843 |
actggtttcacctccggtcgccgggaaacttcaccggaagtaaccttttcccggtgaaattcatcttcactttccaatctagagttccgataagggaagt |
6503942 |
T |
|
| Q |
225 |
ttacacgagtatcatcataaaaccggtaccgataatctccgccatcagcaaccaccacctccggtcgccggagatcgggatacgatccaccgcttctcaa |
324 |
Q |
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| | ||||||||||||||||||||||||| | || | ||| |||| ||| |||||| |||||||||||| | ||||||||| | ||||||||| |
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| T |
6503943 |
gaatatgagtatcatcataaaaccggtaccgttcat------cgtcaacaactaccgcctccgatcgccggagatccgaatacgatcctctgcttctcaa |
6504036 |
T |
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