View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8427_low_9 (Length: 409)
Name: NF8427_low_9
Description: NF8427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8427_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 23 - 391
Target Start/End: Complemental strand, 25176193 - 25175827
Alignment:
| Q |
23 |
ctatagccattaacttagcataaacaaatgagaggttataccaataaaatgattgcaatatacaccattttaaaatggtgcacaatgactattcnnnnnn |
122 |
Q |
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| T |
25176193 |
ctatagccattaacttagcataaacaaatgagaagttataccaataaaatgattgcaacatacaccattttaaaatggtgcaaaatgactatt----gtt |
25176098 |
T |
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| Q |
123 |
nnnnnagtcaaattaatattattgtgatgttaa----gatttcaacaattagtggttgatggtaattaataaatattttatgtgatgattatatgtttta |
218 |
Q |
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| T |
25176097 |
tttttagtcaaattaatattattgtgatgttaactaagagttcaacaattagtggttgatggtaattaataaatattttatatgatgtttat--gtttta |
25176000 |
T |
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| Q |
219 |
ggtgctgagcaatgcaatatacaagagtgtggaacatagggtgattgtgaactcaataaaagatcgtgtttccttggccatgttttacaatccaaagagt |
318 |
Q |
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| T |
25175999 |
ggtgctgagcaatgcaatatacaagagtgtggaacatagggtgattgtgaactcaataaaagatcgtgtttctttggccatgttttacaatccaaagagt |
25175900 |
T |
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| Q |
319 |
gatttgctaattgaacctgctaaggagcttgtgacaaaggaaaggccagctttgtactcagcaatgacctatg |
391 |
Q |
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| T |
25175899 |
gatttgctaattgaacctgctaaggagcttgtgacaaaggaaaggccagctttgtactcagcaatgacctatg |
25175827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 217 - 368
Target Start/End: Original strand, 4781881 - 4782032
Alignment:
| Q |
217 |
taggtgctgagcaatgcaatatacaagagtgtggaacatagggtgattgtgaactcaataaaagatcgtgtttccttggccatgttttacaatccaaaga |
316 |
Q |
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| T |
4781881 |
taggtgttaagcaatgcaatatacaaaagcatagaacacagagtaattgtgaactccaacaaagatagagtttcattggccttcttttataatccaagaa |
4781980 |
T |
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| Q |
317 |
gtgatttgctaattgaacctgctaaggagcttgtgacaaaggaaaggccagc |
368 |
Q |
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| T |
4781981 |
gtgatttactaattcaacctgctaaggaacttatcactaaggataggccagc |
4782032 |
T |
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