View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8428_high_4 (Length: 385)
Name: NF8428_high_4
Description: NF8428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8428_high_4 |
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| [»] scaffold0072 (2 HSPs) |
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Alignment Details
Target: scaffold0072 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: scaffold0072
Description:
Target: scaffold0072; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 33 - 321
Target Start/End: Complemental strand, 40930 - 40642
Alignment:
| Q |
33 |
ggtgttgagagtattcgttatggcgccggtctgactcaaccatatattgttgcaaggtttttgtgagctcagtaatggaattttccattgttttcatgcg |
132 |
Q |
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| T |
40930 |
ggtgttgagagtattcgttatggcgcctgtctaactcaaccatatattgttgcaaggtttttgtgagctcagtaatgaaattttccattgttttcatgcg |
40831 |
T |
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| Q |
133 |
tgtgttgtcagccatgtggggaggtcaatgaaagcaccaaatgttatgatttgatatgataaaaggtactgttatattgaaatgatagtaaaatgataat |
232 |
Q |
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| T |
40830 |
tgtgttgtcagccatgtggggaggtcaatgaaagcaccaaatgttatgatttgatatgataataggtactgttatattgaaatgacagtaaaatgataat |
40731 |
T |
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| Q |
233 |
aatctgaatattattgatggaaaaatggttaaaaccaattgaagaaaggtacagggaatgaaatgatagtgtagaaaagcataaagctt |
321 |
Q |
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| T |
40730 |
aatctaaatattattgatggaaaaatggttaaaaccaattgaagaaaggtacagggaatgaaatgatagtgcagaaaagcataaagctt |
40642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0072; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 174 - 321
Target Start/End: Complemental strand, 45619 - 45472
Alignment:
| Q |
174 |
tgttatgatttgatatgataaaaggtactgttatattgaaatgatagtaaaatgataataatctgaatattattgatggaaaaatggttaaaaccaattg |
273 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
45619 |
tgttatgatttgatatgataataggtactgttatattgaaatgacagtaaaatgataataatctaaatattattgatggaaaaatggttaaaaccaattg |
45520 |
T |
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| Q |
274 |
aagaaaggtacagggaatgaaatgatagtgtagaaaagcataaagctt |
321 |
Q |
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| T |
45519 |
aagaaaggtacagggaatgaaatgatagtgcagaaaagcataaagctt |
45472 |
T |
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