View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8428_high_6 (Length: 306)
Name: NF8428_high_6
Description: NF8428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8428_high_6 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 12 - 306
Target Start/End: Original strand, 1854859 - 1855153
Alignment:
| Q |
12 |
gagaagaatatatggtcaggtcttccatgcaacttgcaagtcaatgcaacttttatttaaattagcaaaataccatgaaaatttggaagggtttttatta |
111 |
Q |
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| T |
1854859 |
gagaagaatatatggtcaggtcttccatgcaacttgcaagtcaatgcaacttttatttaaattagcaaaataccatgaaaatttggaagggtttttatta |
1854958 |
T |
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| Q |
112 |
taaataacgaaacacccttactctaggccacaagtcagtcagtactccaatttaaaaatgaaggtcctgcaagtattaataatacttgctgcattagcac |
211 |
Q |
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| T |
1854959 |
taaataacgaaacacccttactccaggccacaagtcagtcagtactccaatttaaaaatgaaggtcctgcaagtattaataatacttgctgcattagcac |
1855058 |
T |
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| Q |
212 |
atttgatagaagcagttgcatttacacttgcatctgatcaacctaaacaagtcctacctggctgcaattacacttgtggaggtgtaaaagttcca |
306 |
Q |
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| T |
1855059 |
atttgatagaagcagttgcatttacacttgcatctgatcaacctaaacaagtcctaccaggctgcaattacacctgtggaggtgtaaaagttcca |
1855153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 239 - 292
Target Start/End: Complemental strand, 1818102 - 1818049
Alignment:
| Q |
239 |
ttgcatctgatcaacctaaacaagtcctacctggctgcaattacacttgtggag |
292 |
Q |
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| T |
1818102 |
ttgcatctgatcaacctaaacaagtcctaccaggctgcaattacacctgtggag |
1818049 |
T |
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