View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8428_low_1 (Length: 719)
Name: NF8428_low_1
Description: NF8428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8428_low_1 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 659; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 659; E-Value: 0
Query Start/End: Original strand, 17 - 719
Target Start/End: Complemental strand, 44598542 - 44597840
Alignment:
| Q |
17 |
aaataatttctgcatcaattttcttatgttgattgtttaattgataatgtgtgtgtattaatgatgtttgtattttggtgggtggttgtttgtttctttg |
116 |
Q |
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| T |
44598542 |
aaataatttctgcatcaattttcttatgttgattgtttaattgatgttgtgtgtgtattaatgatgtttgtattttggtgggtggttgtttgtttctttg |
44598443 |
T |
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| Q |
117 |
ttgggtatttaggcatctgagggaattatttgccatcgatcctgcggattacatgcttgctatttgtggcaatgatacattgagggaaatgtcttctcct |
216 |
Q |
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| T |
44598442 |
ttgggtatttaggcatctgagggaattatttgctatcgatcctgcggattacatgcttgctatttgtggcaatgatacattgagggaaatgtcttctcct |
44598343 |
T |
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| Q |
217 |
ggaaaaagtggaagcttcttttaccttactcaagatgaccgatttgttatcaaaaccttgaagaagtctgaagtcaaggttagtcctacttaattactag |
316 |
Q |
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| T |
44598342 |
ggaaaaagtggaagcttcttttaccttactcaagatgaccgatttgttatcaaaaccttgaagaagtctgaagtcaaggttagtcctaattaattactag |
44598243 |
T |
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| Q |
317 |
acttgaaaaagcattatgtttgatgagaaaagtataaaacctatattgagcaaggtgaaatttcaatcacagcttttggtcaccatgcttttttcctctg |
416 |
Q |
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| T |
44598242 |
acttgaaaaagcattatgtttgatgagaaaagtataaaacctatattgagcaaggtgaaatttcaatcacagcttttggtcaccatgcttttttcctctg |
44598143 |
T |
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| Q |
417 |
tttcaatgattagttggtggccatgtcaggtgctcatcaggatgcttcccagttactatcaacatgtttctcagtacaagaactcgttggttacgaaatt |
516 |
Q |
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| T |
44598142 |
tttcattgattagttggtggccatgtcaggtgctcatcaggatgcttcctagttactatcaacatgtttctcagtacaagaactcgttggttacgaaatt |
44598043 |
T |
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| Q |
517 |
cctgggagttcattgtgtcaaacctattggaggacaaaaggtatggactacctaatttaaattttgcactgaactgatgtgctatatgaatgttagtaat |
616 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||| |
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| T |
44598042 |
cctaggagttcattgtgtcaaacctattggaggacaaaaggtatggactacctaatttaaattttgcactgaactgatgtactatatgaatgcttgtaat |
44597943 |
T |
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| Q |
617 |
aatataaatgaatacttgtattgctatggaaaaacagactcgatttattgtaatgggcaatgtgttttgttcggagtatcgaattcataagcgatttgac |
716 |
Q |
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| T |
44597942 |
aatataaacgaatacttgtattgctatggaaaaacagactcgatttattgtaatgggcaatgtgttttgttcggagtatcgaattcataagcgatttgac |
44597843 |
T |
|
| Q |
717 |
ctc |
719 |
Q |
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||| |
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| T |
44597842 |
ctc |
44597840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 92; Significance: 3e-44; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 122 - 297
Target Start/End: Complemental strand, 39806577 - 39806402
Alignment:
| Q |
122 |
tatttaggcatctgagggaattatttgccatcgatcctgcggattacatgcttgctatttgtggcaatgatacattgagggaaatgtcttctcctggaaa |
221 |
Q |
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||||||| ||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||| || | || || |||||||||||||| || |
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| T |
39806577 |
tatttagacatctaagggaattatttgccatagatcctgcggattacatgcatgctatttgtggaaatgattcactcagagagatgtcttctcctggcaa |
39806478 |
T |
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| Q |
222 |
aagtggaagcttcttttaccttactcaagatgaccgatttgttatcaaaaccttgaagaagtctgaagtcaaggtt |
297 |
Q |
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| T |
39806477 |
aagtggaagcatcttttacctcactcaagacgaccgtttcataatcaaaacggtgaagaaatctgaagtcaaggtt |
39806402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 646 - 706
Target Start/End: Complemental strand, 39806097 - 39806037
Alignment:
| Q |
646 |
aaaaacagactcgatttattgtaatgggcaatgtgttttgttcggagtatcgaattcataa |
706 |
Q |
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| T |
39806097 |
aaaaacagattcggtttattgtgatgggcaatgtgttttgttcggagtatcgaatccataa |
39806037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 440 - 562
Target Start/End: Complemental strand, 39806314 - 39806192
Alignment:
| Q |
440 |
tgtcaggtgctcatcaggatgcttcccagttactatcaacatgtttctcagtacaagaactcgttggttacgaaattcctgggagttcattgtgtcaaac |
539 |
Q |
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| T |
39806314 |
tgtcaggtgcttatcagaatgcttccacgttactaccaacatgtttgtcaatacaagaactctttggtaactgcattcttaggggcacattgtatcaaac |
39806215 |
T |
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| Q |
540 |
ctattggaggacaaaaggtatgg |
562 |
Q |
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| T |
39806214 |
ctgttggaggtcaaaaggtatgg |
39806192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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