View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8428_low_11 (Length: 280)
Name: NF8428_low_11
Description: NF8428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8428_low_11 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 36026826 - 36026547
Alignment:
| Q |
1 |
ccaagccaaaaaagtgagaggaaaaaggcttgattcatgaaatgatgcttgaacatcaaaatattaatgcccgatacaatttaatcgttctaagccatgg |
100 |
Q |
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| T |
36026826 |
ccaagccaaaaaagtgagaggaaaaaggcttgattcatgaaatgatgcttgaacatcaaaatattaatgccctatacaatttaatcgttctaagccatgg |
36026727 |
T |
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| Q |
101 |
ttcagcacattacaaaatttaaaagaacaattttaattattacctttcaacccttggggtttacaattacattggctttatctgcaaaaagaatatacta |
200 |
Q |
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| T |
36026726 |
ttcagcacattacaaaatttaaaaggacaattttaattattacctttcaacccttggggtttacaattacattggctttatctgcaaaaagaatatacta |
36026627 |
T |
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| Q |
201 |
gaatgagatgttgaggaggacacatgtctggaggcaatagcgatctacaagagaacnnnnnnncttacaaatacaaaaac |
280 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
36026626 |
gaatgagatgttgaggaggacacatgtctggaggcaatagcgatctacaagagaacaaaaaaacttacaaatacaaaaac |
36026547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 128 - 256
Target Start/End: Original strand, 16933688 - 16933820
Alignment:
| Q |
128 |
caattttaattattacctttcaa----cccttggggtttacaattacattggctttatctgcaaaaagaatatactagaatgagatgttgaggaggacac |
223 |
Q |
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|||||||||||||||||||||| ||||||||||||||||| ||||||| |||| || ||| ||||||||| ||||||| |||||||||||||| |
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| T |
16933688 |
caattttaattattacctttcatttctcccttggggtttacaataccattggcattatttgaaaagagaatatacgttaatgagaggttgaggaggacac |
16933787 |
T |
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| Q |
224 |
atgtctggaggcaatagcgatctacaagagaac |
256 |
Q |
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| T |
16933788 |
atgtttggaggcaatagctacctacaagagaac |
16933820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 16933057 - 16933136
Alignment:
| Q |
1 |
ccaagccaaaaaagtgagaggaaaaaggcttgattcatgaaatgatgcttgaacatcaaaatattaatgcccgatacaattt |
82 |
Q |
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||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||||||||| |||||| ||||||||| |
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| T |
16933057 |
ccaagccaaaaaaa-gagaggaaaaag-cttgattcttgaaatgatgcttgaacatcaaaatattgatgcccaatacaattt |
16933136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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