View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8428_low_14 (Length: 250)
Name: NF8428_low_14
Description: NF8428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8428_low_14 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 62 - 250
Target Start/End: Complemental strand, 44393642 - 44393448
Alignment:
| Q |
62 |
aagcacaagcaaaactacaacctctacattttcaagaaccagaaagccttcaatctctgcaatttcactcaagccaatcttctcactgatcctagcacta |
161 |
Q |
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| T |
44393642 |
aagcacaagcaaaactacaacctctacattttcaagaaccagaaagccttcaatctctgcaatttcactcaagccaatcttctcactgatcctagcacta |
44393543 |
T |
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| Q |
162 |
cc------tcctatacggtaagacccttcaaattgcataatggttctttaaaaacagctcaaaaattcattatttttcatattttgagttcttca |
250 |
Q |
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| T |
44393542 |
cctcctgctcctatacggtaagacccttcaaattgcatcatggttctttaaaaacagctcaaaaattaattatttttcatattttgagttcttca |
44393448 |
T |
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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 208
Target Start/End: Original strand, 40713252 - 40713352
Alignment:
| Q |
105 |
aagccttcaatctctgcaatttcactcaagccaatcttctcactgatcctagcactacctcctatacggtaagacccttcaaattgcataatggttcttt |
204 |
Q |
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|||||||||||||| |||||||| ||||||||| | ||||| | || | |||||||||||| || ||||||||||||||||| |||| ||||||| |
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| T |
40713252 |
aagccttcaatctc---aatttcacgcaagccaatatgctcaccaaccccaacactacctcctacactgtaagacccttcaaatttcatacgggttcttg |
40713348 |
T |
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| Q |
205 |
aaaa |
208 |
Q |
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| T |
40713349 |
aaaa |
40713352 |
T |
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