View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8428_low_15 (Length: 241)
Name: NF8428_low_15
Description: NF8428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8428_low_15 |
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| [»] scaffold0172 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 169; Significance: 9e-91; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 30 - 236
Target Start/End: Original strand, 2038610 - 2038813
Alignment:
| Q |
30 |
atttaatgtagcctgaaaacataaaatcaagtattcaaatgagttgaatttatttttcttaactattagaaattactagaaacataaaagatgttcaggt |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| | |
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| T |
2038610 |
atttaatgtagcctgaaaacataaaatcaagtattcaaatgagttgaatttatttttcttaactattagaaattactagaaacatagaagaggttcagat |
2038709 |
T |
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| Q |
130 |
tcgactagaggaaaatgaattatacatgttaaaataagttgaaactgtgtcgtgtcaaaaatgaaataagtaagttgtagtgagttagtattctttagta |
229 |
Q |
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| T |
2038710 |
tcgactaaaggaaaatgaattatacatgttaaaataagttgaaactgtgtcgtgtcaaaaaggaaataagtaagttgtagtgagt---tattctttagta |
2038806 |
T |
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| Q |
230 |
taatcta |
236 |
Q |
| |
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|||||| |
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| T |
2038807 |
gaatcta |
2038813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 30 - 236
Target Start/End: Complemental strand, 29963546 - 29963349
Alignment:
| Q |
30 |
atttaatgtagcctgaaaacataaaatcaagtattcaaatgagttgaatttatttttcttaactattagaaattactagaaacataaaagatgttcaggt |
129 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |||||||||| |||| |||||||| |
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| T |
29963546 |
atttaatgtagcttgaaaacataaaatcaagtattcaaatgagttgaatttatttt-cttaactatt-----tttttagaaacatagaagaggttcaggt |
29963453 |
T |
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| Q |
130 |
tcgactagaggaaaatgaattatacatgttaaaataagttgaaactgtgtcgtgtcaaaaatgaaataagtaagttgtagtgagttagtattctttagta |
229 |
Q |
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| T |
29963452 |
tcgactagaggaaaatgaattatacatgttaaaataagttgaaactgtgtcgtgtcaaaaaggaaataagtaagttgtagtgagt---tattctttagta |
29963356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 6916763 - 6916797
Alignment:
| Q |
1 |
tcactccaatgtttttattgggaaccttgatttaa |
35 |
Q |
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| T |
6916763 |
tcactccaatgtttttattgggaaacttgatttaa |
6916797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0172 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: scaffold0172
Description:
Target: scaffold0172; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 30 - 236
Target Start/End: Complemental strand, 35113 - 34909
Alignment:
| Q |
30 |
atttaatgtagcctgaaaacataaaatcaagtattcaaatgagttgaatttatttttcttaactattagaaattactagaaacataa--aagatgttcag |
127 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||| |
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| T |
35113 |
atttaatgtagcctgaaaacataaaatcaagtattcaaatgagttgaatttatttt-cttaactattagaaattactagaaacatatggaagaggttcat |
35015 |
T |
|
| Q |
128 |
gttcgactagaggaaaatgaattatacatgttaaaataagttgaaactgtgtcgtgtcaaaaatgaaataagtaagttgtagtgagttagtattctttag |
227 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |
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| T |
35014 |
gttcgactagaggaaaatgaattatacatgttaaaataagttgaaactgtgtcgtgtcaaaaaggaaataagtaagttgtagtgagt---tattctttag |
34918 |
T |
|
| Q |
228 |
tataatcta |
236 |
Q |
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|| |||||| |
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|
| T |
34917 |
tagaatcta |
34909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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