View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8428_low_17 (Length: 227)
Name: NF8428_low_17
Description: NF8428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8428_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 180; Significance: 2e-97; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 19 - 214
Target Start/End: Complemental strand, 2098353 - 2098158
Alignment:
| Q |
19 |
acatatgttggtaaattgtttagaaaagaaaaatgtataaacaatgaagagtggtggtgagtaaatcttaacaatatctaaccaattaggaagaatatga |
118 |
Q |
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| T |
2098353 |
acatatgttggtaaattgtttagaaaagaaaaatgtataaacaatgaagagtagtggtgagtaaatcttaacaatatctaaccaattaggaagaatatga |
2098254 |
T |
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| Q |
119 |
aactaaatgaattcagagaagcctttcttttgtctaggaaggggatagttccatggttgttttaacaaagaaatcgtgtcattgctcagtattatc |
214 |
Q |
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| T |
2098253 |
aactaaatgaattcagagaagcctttcttttttctaggaaggggatagttccatggttgttttaacaaagaaatcgtgtcatcgctcagaattatc |
2098158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 23 - 214
Target Start/End: Complemental strand, 2106809 - 2106612
Alignment:
| Q |
23 |
atgttggtaaattgtttagaaaagaaaaatgtataaacaatgaagagtggtggtgagtaaatcttaacaatatctaaccaattaggaa-gaatatgaaac |
121 |
Q |
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| T |
2106809 |
atgttggtaaattgtttagaaaagaaaaatgtataaaaaatgaagagtagcaatgagtaaatcttaacaatatctaaccaattaggaaaggatataaaac |
2106710 |
T |
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| Q |
122 |
taaatgaattcagagaagcctttcttttgtct----aggaaggggatagttccatggttgtttt-aacaaagaaatcgtgtcattgctcagtattatc |
214 |
Q |
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| T |
2106709 |
taaatgaattcaaaggagccttttttttttttttttaagaaagggatagttccatagttgtttttaacaaagaaatcatgtcatcgcttagaattatc |
2106612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 76 - 116
Target Start/End: Complemental strand, 2047899 - 2047859
Alignment:
| Q |
76 |
tgagtaaatcttaacaatatctaaccaattaggaagaatat |
116 |
Q |
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| T |
2047899 |
tgagtaaatattaacaatatctaaccaattaggaagaatat |
2047859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 91 - 149
Target Start/End: Complemental strand, 2082911 - 2082854
Alignment:
| Q |
91 |
aatatctaaccaattaggaagaatatgaaactaaatgaattcagagaagcctttctttt |
149 |
Q |
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| T |
2082911 |
aatatctaaccaattaggatgaatatg-aactaaatgaatccaaagaaacctttctttt |
2082854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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