View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8428_low_2 (Length: 498)
Name: NF8428_low_2
Description: NF8428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8428_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 24 - 241
Target Start/End: Complemental strand, 1855579 - 1855362
Alignment:
| Q |
24 |
acaacaacctaaacctgtgcactttccagtgttatttccaattaccattttagtatcaaaatcataacatcttgttaagcatcctgtagaataagtggca |
123 |
Q |
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| T |
1855579 |
acaacaacctaaacctgtgcactttccagtgttatttccaattaccattttagtatcaaaatcataacatcttgttaagcatcctgtagaataagtggca |
1855480 |
T |
|
| Q |
124 |
cccttgaaattactgttgagatatccgtaactgtcacaaccaactgttatgaatttgttgtctgtgcttgaaattgcgagagaagaaactctgagagaag |
223 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
1855479 |
cccttgaaattactgttgagatatccgaaactgtcacaaccaactgttatgaatttgttgtctgtgcttgaaattgcgagggaagaaactctgagagaag |
1855380 |
T |
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| Q |
224 |
gtttatttgctttttcgg |
241 |
Q |
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|||||||||||||||||| |
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| T |
1855379 |
gtttatttgctttttcgg |
1855362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 276 - 476
Target Start/End: Complemental strand, 1855333 - 1855133
Alignment:
| Q |
276 |
cgtacagagacgtgagacgaaaaatctcatttccatttgaccttggggatttatgtctaggacttgtatattcttaccataaattaatttggaattgtct |
375 |
Q |
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| T |
1855333 |
cgtacagagatgtgagacgaaaaatctcatttccatttgaccttggggatttatgtctaggacttgtatattcttaccataaattaatttggaattgtct |
1855234 |
T |
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| Q |
376 |
gtacaattgagcataaatttggaatttatgtaacatggtgtatgatcttgtgttgttgaatttcctatgccaaatggatatggaacttttacacctccac |
475 |
Q |
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| T |
1855233 |
gtacaagtgagcataaatttggaatttatgtaacatggtgtatgatcttgtgctgttgaatttcctatgccaaatggatatggaacttttacacctccac |
1855134 |
T |
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| Q |
476 |
a |
476 |
Q |
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| |
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| T |
1855133 |
a |
1855133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 25 - 235
Target Start/End: Original strand, 1817613 - 1817823
Alignment:
| Q |
25 |
caacaacctaaacctgtgcactttccagtgttatttccaattaccattttagtatcaaaatcataacatcttgttaagcatcctgtagaataagtggcac |
124 |
Q |
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||||| |||||||||||||| |||||||||||||| |||||||| ||||||| | |||||||||||||||||||||||| ||||| ||||||||| ||| |
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| T |
1817613 |
caacaccctaaacctgtgcattttccagtgttattcccaattactattttaggtttaaaatcataacatcttgttaagcaccctgttgaataagtgccac |
1817712 |
T |
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| Q |
125 |
ccttgaaattactgttgagatatccgtaactgtcacaaccaactgttatgaatttgttgtctgtgcttgaaattgcgagagaagaaactctgagagaagg |
224 |
Q |
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| T |
1817713 |
ctgtgaaattactgttgagatatccgtaactgtcgcaaccaacggttatgaatttgttttccgtacttgaaattgtgtgaggagaaactatgagataagc |
1817812 |
T |
|
| Q |
225 |
tttatttgctt |
235 |
Q |
| |
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| T |
1817813 |
tctatttgctt |
1817823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 403 - 482
Target Start/End: Original strand, 1844913 - 1844992
Alignment:
| Q |
403 |
atgtaacatggtgtatgatcttgtgttgttgaatttcctatgccaaatggatatggaacttttacacctccacaagtata |
482 |
Q |
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| T |
1844913 |
atgtaaaatggtgtatgatcttgtgttgttgaatttcctatgccaaatggatatggaatgtttatatctccacaagtata |
1844992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 287 - 460
Target Start/End: Original strand, 1817866 - 1818039
Alignment:
| Q |
287 |
gtgagacgaaaaatctcatttccatttgaccttggggatttatgtctaggacttgtatattcttaccataaattaatttggaattgtctgtacaattgag |
386 |
Q |
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| T |
1817866 |
gtgagactgaaaatttcatttccacttgaccttggggatttatgtccaggacttcgatacccctaggccgaattaattttgagttgtttacacaggtgag |
1817965 |
T |
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| Q |
387 |
cataaatttggaatttatgtaacatggtgtatgatcttgtgttgttgaatttcctatgccaaatggatatggaa |
460 |
Q |
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| T |
1817966 |
ttcaaattttgaatccatgtaacatggtgtatgatgttgtgctgttgaatttcctatgccaaatggatatggaa |
1818039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 86 - 194
Target Start/End: Original strand, 9220511 - 9220619
Alignment:
| Q |
86 |
cataacatcttgttaagcatcctgtagaataagtggcacccttgaaattactgttgagatatccgtaactgtcacaaccaactgttatgaatttgttgtc |
185 |
Q |
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| T |
9220511 |
cataacatcttgttaagcaaccggttgaatatgtttcttcgttgtaaatactgttgagataaccgtaactgtcacaaccaaccgttatgaacttgttttc |
9220610 |
T |
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| Q |
186 |
tgtgcttga |
194 |
Q |
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| T |
9220611 |
agtgcttga |
9220619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 135 - 182
Target Start/End: Original strand, 9158110 - 9158157
Alignment:
| Q |
135 |
actgttgagatatccgtaactgtcacaaccaactgttatgaatttgtt |
182 |
Q |
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| T |
9158110 |
actgttgagataaccgtaactgtcacaaccaaccgttacgaacttgtt |
9158157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 124; Significance: 1e-63; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 37 - 219
Target Start/End: Complemental strand, 37567041 - 37566852
Alignment:
| Q |
37 |
cctgtgcactttccagtgttatttccaattaccattttagtatcaaaatcataacatcttgttaa-------gcatcctgtagaataagtggcacccttg |
129 |
Q |
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| T |
37567041 |
cctgtgcattttccagtgttattcccagttaccattttaggatcaaaatcataacatcttgttaactgttaagcatcctgtagaataagtggcacccttg |
37566942 |
T |
|
| Q |
130 |
aaattactgttgagatatccgtaactgtcacaaccaactgttatgaatttgttgtctgtgcttgaaattgcgagagaagaaactctgaga |
219 |
Q |
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||||||||||||||||||||||||||||| |||||||| |||||||||||||| || ||||||||||||| |||||||| |||||||||| |
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| T |
37566941 |
aaattactgttgagatatccgtaactgtcgcaaccaacggttatgaatttgttttccgtgcttgaaattgtgagagaaggaactctgaga |
37566852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 291 - 392
Target Start/End: Complemental strand, 37566845 - 37566744
Alignment:
| Q |
291 |
gacgaaaaatctcatttccatttgaccttggggatttatgtctaggacttgtatattcttaccataaattaatttggaattgtctgtacaattgagcata |
390 |
Q |
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| T |
37566845 |
gacgaaaaatttcatttccatttgaccgtgcggatttatgtctaggacttgtagattcttaccacggattaatttggagttgtttgtacaagtgagctta |
37566746 |
T |
|
| Q |
391 |
aa |
392 |
Q |
| |
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|| |
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|
| T |
37566745 |
aa |
37566744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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