View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8428_low_3 (Length: 452)
Name: NF8428_low_3
Description: NF8428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8428_low_3 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 418; Significance: 0; HSPs: 12)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 1 - 449
Target Start/End: Complemental strand, 2098181 - 2097735
Alignment:
| Q |
1 |
atcgtgtcattgctcagaattatcgaatcaccatgtatcttttttatgaacaattggattatgttttccatatatcaacattcaaatgtactgtaatttt |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
2098181 |
atcgtgtcatcgctcagaattatcgaatcaccatgtatcttttttatgaacaattggattatgttttccatat--caacattcaaatgtactgtaatttt |
2098084 |
T |
|
| Q |
101 |
aagttaaagataataatgcatactctatgaacatacctgattgataacaagttcggaatctccgtagacagtgatgttcctatatcctttccttacagct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2098083 |
aagttaaagataataatgcatactctatgaacatacctgattgataacaagttcggaatctccgtagacagtgatgttcctatatcctttccttacagct |
2097984 |
T |
|
| Q |
201 |
tgtttcagtcctaaaatcaatgcgcgatactcagcaacattatttgtttgataaccaagtccttcacggaatcgatagagctacaaagaaacataagagt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
2097983 |
tgtttcagtcctaaaatcaatgcgcgatactcagcaacattatttgtttgataaccaagtccttcgcggaatcgatagagctacaaagaaacataagagt |
2097884 |
T |
|
| Q |
301 |
tagcttagctacattttataaataaatagtataatataatgtctaaatgaattgttgcacaaagtagataccagactcccatcttcagaacgcagtatag |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2097883 |
tagcttagctacattttataaataaatagtataatataatgtctaaatgaattgttgcaccaagtagataccagactcccatcttcagaacgcagtatag |
2097784 |
T |
|
| Q |
401 |
ctccggcaccagctggtccgggattcccgctggctgcaacaccaaactc |
449 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
2097783 |
ctccggcaccagctggtccgggattcccgctggctgcaccatcaaactc |
2097735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 129 - 449
Target Start/End: Complemental strand, 2106544 - 2106222
Alignment:
| Q |
129 |
gaacatacctgattgataacaagttcggaatctccgtagacagtgatgttcctatatcctttccttacagcttgtttcagtcctaaaatcaatgcgcgat |
228 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||| |
|
|
| T |
2106544 |
gaacagacctgattgataacaagttcggagtctccgtagacagtgatgttcctatatcctttccttagagcttgtttcagtcctaaaatcagtgcacgat |
2106445 |
T |
|
| Q |
229 |
actcagcaacattatttgtttgataaccaagtccttcacggaatcgatagagctacaaagaaac--ataagagttagcttagctacattttataaataaa |
326 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
2106444 |
actcagcaacattatttgtttgataaccaagtccttcgcggaatcgatagagctacaaagaaacatataagagttagcttagctacattttataaataaa |
2106345 |
T |
|
| Q |
327 |
tagtataatataatgtctaaatgaattgttgcacaaagtagataccagactcccatcttcagaacgcagtatagctccggcaccagctggtccgggattc |
426 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2106344 |
tagtataatataatgtccaaatgaattgttgcacaaagtagataccagactcccatcttcagaacgcagtatagctccggcaccagctggtccgggattc |
2106245 |
T |
|
| Q |
427 |
ccgctggctgcaacaccaaactc |
449 |
Q |
| |
|
|| ||||||||| || ||||||| |
|
|
| T |
2106244 |
ccactggctgcaccatcaaactc |
2106222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 198 - 425
Target Start/End: Complemental strand, 2088432 - 2088212
Alignment:
| Q |
198 |
gcttgtttcagtcctaaaatcaatgcgcgatactcagcaacattatttgtttgataaccaagtccttcacggaatcgatagagctacaaagaaacataag |
297 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||||||||||||||||||||||| || || | |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2088432 |
gcttgtttcattcctaaaatcaaagcgcgatactcagcaacattatttgtttggtagcctaatccttcacggaatcgatagagctacaaagaaacataag |
2088333 |
T |
|
| Q |
298 |
agttagcttagctacattttataaataaatagtataatataatgtctaaatgaattgttgcacaaagtagataccagactcccatcttcagaacgcagta |
397 |
Q |
| |
|
| ||||||||||||||||||||| |||||||||| | | ||||||||||| ||||| | ||||| | |||||| |||||||||||||| |
|
|
| T |
2088332 |
-----ggttagctacattttataaataa--catataatataaagctcagatgaattgttgagtaaagttggtaccacattcccattttcagaacgcagta |
2088240 |
T |
|
| Q |
398 |
tagctccggcaccagctggtccgggatt |
425 |
Q |
| |
|
||||||| |||||||||||||||||||| |
|
|
| T |
2088239 |
tagctcctgcaccagctggtccgggatt |
2088212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 198 - 413
Target Start/End: Original strand, 2136276 - 2136485
Alignment:
| Q |
198 |
gcttgtttcagtcctaaaatcaatgcgcgatactcagcaacattatttgtttgataaccaagtccttcacggaatcgatagagctacaaagaaacataag |
297 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||||||| | || | |||| ||| || | |||||| || |||| ||||| ||||||||||||||||| |
|
|
| T |
2136276 |
gcttgtttcagacctaaaatcaatgctcgatactcagcctccttttgtgttagattccccaatccttcgcgaaatccatagaactacaaagaaacataag |
2136375 |
T |
|
| Q |
298 |
agttagcttagctacattttataaataaatagtataatataatgtctaaatgaattgttgcacaaagtagataccagactcccatcttcagaacgcagta |
397 |
Q |
| |
|
|| || ||||||||||||||||| || ||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
2136376 |
catt-gc----ctacattttataaataattaa-ataatataaaatccaaatgaattgttgcataaagtagataccagactcccatcttcagatagcagta |
2136469 |
T |
|
| Q |
398 |
tagctccggcaccagc |
413 |
Q |
| |
|
|||||| |||||||| |
|
|
| T |
2136470 |
aagctcctgcaccagc |
2136485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 135 - 291
Target Start/End: Complemental strand, 2054163 - 2054007
Alignment:
| Q |
135 |
acctgattgataacaagttcggaatctccgtagacagtgatgttcctatatcctttccttacagcttgtttcagtcctaaaatcaatgcgcgatactcag |
234 |
Q |
| |
|
||||||||||||||||| | ||| ||||| | ||| |||||||| || ||||||| | | ||||||||||||||| || ||||| ||||| ||||||| |
|
|
| T |
2054163 |
acctgattgataacaaggttggagtctccttgcacactgatgttcttaaatcctttattgatagcttgtttcagtcccaatatcaaagcgcggtactcag |
2054064 |
T |
|
| Q |
235 |
caacattatttgtttgataaccaagtccttcacggaatcgatagagctacaaagaaa |
291 |
Q |
| |
|
|||| |||||||||||||| || ||||||||||||||||||||||||| | |||||| |
|
|
| T |
2054063 |
caacgttatttgtttgatagcccagtccttcacggaatcgatagagctgcgaagaaa |
2054007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 129 - 328
Target Start/End: Complemental strand, 2042091 - 2041892
Alignment:
| Q |
129 |
gaacatacctgattgataacaagttcggaatctccgtagacagtgatgttcctatatcctttccttacagcttgtttcagtcctaaaatcaatgcgcgat |
228 |
Q |
| |
|
||||| |||||||||||||||||||| || ||||| | ||| ||||||| ||||||||| || | |||| |||| |||||| ||||| ||||||| |
|
|
| T |
2042091 |
gaacaaacctgattgataacaagttctgagtctccttgcacattgatgtttctatatcctctctggattgcttaattcaatcctaagatcaaagcgcgat |
2041992 |
T |
|
| Q |
229 |
actcagcaacattatttgtttgataaccaagtccttcacggaatcgatagagcta-----caaagaaacataagagttagcttagctacattttataaat |
323 |
Q |
| |
|
||||||||||||||||||||||||| || |||||||| |||||| |||| ||||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
2041991 |
actcagcaacattatttgtttgatagcccagtccttctcggaattgatatagctatgaagaaaagaaacataagag-----ttagctacattttataaat |
2041897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 128 - 291
Target Start/End: Complemental strand, 2047609 - 2047446
Alignment:
| Q |
128 |
tgaacatacctgattgataacaagttcggaatctccgtagacagtgatgttcctatatcctttccttacagcttgtttcagtcctaaaatcaatgcgcga |
227 |
Q |
| |
|
|||||| |||||||||| |||||| ||| ||||| | ||| ||||||||||||||||||| | ||||| || ||||| ||||| || || ||| |
|
|
| T |
2047609 |
tgaacaaacctgattgacaacaagcaaggagtctccatgcacactgatgttcctatatcctttatagattgcttgattaagtcccaaaattaaagcacga |
2047510 |
T |
|
| Q |
228 |
tactcagcaacattatttgtttgataaccaagtccttcacggaatcgatagagctacaaagaaa |
291 |
Q |
| |
|
||||||||| | |||||||||||||| || ||||||||||||||||||||||||| ||||||| |
|
|
| T |
2047509 |
tactcagcagcgttatttgtttgatagcccagtccttcacggaatcgatagagctgtaaagaaa |
2047446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 5 - 54
Target Start/End: Complemental strand, 2106631 - 2106582
Alignment:
| Q |
5 |
tgtcattgctcagaattatcgaatcaccatgtatcttttttatgaacaat |
54 |
Q |
| |
|
|||||| ||| ||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
2106631 |
tgtcatcgcttagaattatcaaatcaccatgtatcttttttatgaacaat |
2106582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 361 - 419
Target Start/End: Complemental strand, 2082421 - 2082363
Alignment:
| Q |
361 |
aaagtagataccagactcccatcttcagaacgcagtatagctccggcaccagctggtcc |
419 |
Q |
| |
|
|||||| ||||||||||||||||||||| | |||||| |||||| ||||| |||||||| |
|
|
| T |
2082421 |
aaagtatataccagactcccatcttcagcaagcagtaaagctcctgcacctgctggtcc |
2082363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 376 - 425
Target Start/End: Complemental strand, 2036811 - 2036762
Alignment:
| Q |
376 |
ctcccatcttcagaacgcagtatagctccggcaccagctggtccgggatt |
425 |
Q |
| |
|
||||||||||||| ||||||||| ||||| |||||||||||||| ||||| |
|
|
| T |
2036811 |
ctcccatcttcagcacgcagtattgctccagcaccagctggtccaggatt |
2036762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 198 - 282
Target Start/End: Complemental strand, 2058211 - 2058127
Alignment:
| Q |
198 |
gcttgtttcagtcctaaaatcaatgcgcgatactcagcaacattatttgtttgataaccaagtccttcacggaatcgatagagct |
282 |
Q |
| |
|
||||| || ||||| ||||| || ||||||||||||||| | ||| ||| |||| || ||||||||||||||||||||||||| |
|
|
| T |
2058211 |
gcttgctttagtcccaaaattaaagcgcgatactcagcagaactatctgtctgatcgcccagtccttcacggaatcgatagagct |
2058127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 213 - 291
Target Start/End: Complemental strand, 2062622 - 2062544
Alignment:
| Q |
213 |
aaaatcaatgcgcgatactcagcaacattatttgtttgataaccaagtccttcacggaatcgatagagctacaaagaaa |
291 |
Q |
| |
|
||||| || ||||||||||||||| | ||||| ||||| |||| ||||||||||| |||||| |||||| | |||||| |
|
|
| T |
2062622 |
aaaattaaagcgcgatactcagcagaactatttttttgacaacctagtccttcacgaaatcgaaagagctgcgaagaaa |
2062544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University