View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8428_low_4 (Length: 404)
Name: NF8428_low_4
Description: NF8428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8428_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 365; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 18 - 386
Target Start/End: Complemental strand, 2107159 - 2106791
Alignment:
| Q |
18 |
aaaagtataaagacttgtaatctataattgaaaagattgttcaagacttgtaaccatttgtattttgacagtaaaaaataattaaacagtcttatttagc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2107159 |
aaaagtataaagacttgtaatctataattgaaaagattgttcaagacttgtaaccatttgtattttgacagtaaaaaataattaaacagtcttatttagc |
2107060 |
T |
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| Q |
118 |
agaagataaagtatgatcaaaatgatccccaaattccaatctaattgttttcaacttcacaaagcagtgctcaattgagaaagatgcaacttaaacataa |
217 |
Q |
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| T |
2107059 |
agaagataaagtatgatcaaaatgatccccaaattccaatctaattgttttcaacttcacaaagcagtgctcaattgagaaagatgcaacttaaacataa |
2106960 |
T |
|
| Q |
218 |
tagaacaaattgctaaatatataccctaggaatgtaaaagatgctgaacaagtgaaagttatcccttagctccaaagcctcattgcataagttccttaaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2106959 |
tagaacaaattgctaaatatataccctaggaatgtaaaagatgctgaacaagtgaaagttatcccttagctccaaagcctcattgcataagttccttaaa |
2106860 |
T |
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| Q |
318 |
taagcattgttgatgttccataaacctttcaactgttggaaaacaataacatgttggtaaattgtttag |
386 |
Q |
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| T |
2106859 |
taagcattgttgatgttccataaacctttcaactgttgcaaaacaataacatgttggtaaattgtttag |
2106791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 120 - 386
Target Start/End: Complemental strand, 2098577 - 2098331
Alignment:
| Q |
120 |
aagataaagtatgatcaaaatgatccccaaattccaatctaattgttttcaacttcacaaagcagtgctcaattgagaaagatgcaacttaaacataata |
219 |
Q |
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| T |
2098577 |
aagataaagtatgatcaaggtgattcctaaattccaatctagatgtttccaacttcacaaagcaatgctcaattgagaaaggagcaacttaa-------- |
2098486 |
T |
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| Q |
220 |
gaacaaattgctaaatatataccctaggaatgtaaaagatgctgaacaagtgaaagttatcccttagctccaaagcctcattgcataagttccttaaata |
319 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
2098485 |
--------------ataaataccctaggaatgtaaaagatgctgaacaagtgaaagttatcccttagctccaaggcctcattgcataagttccttaaatg |
2098400 |
T |
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| Q |
320 |
agcattgttgatgttccataaacctttcaactgttggaaaacaataac--atgttggtaaattgtttag |
386 |
Q |
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| T |
2098399 |
agcattgttgatgttccataaacctttcagctgttgcaaaacaataacatatgttggtaaattgtttag |
2098331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 120 - 183
Target Start/End: Complemental strand, 2083270 - 2083207
Alignment:
| Q |
120 |
aagataaagtatgatcaaaatgatccccaaattccaatctaattgttttcaacttcacaaagca |
183 |
Q |
| |
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|||| ||||||||||||||||||| | ||||| ||||| ||||||||||||||| ||||||||| |
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| T |
2083270 |
aagaaaaagtatgatcaaaatgattctcaaataccaatgtaattgttttcaactccacaaagca |
2083207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 268 - 369
Target Start/End: Complemental strand, 2088674 - 2088572
Alignment:
| Q |
268 |
agtgaaagttatcccttagctccaaagcctcattgcataagttccttaaataagcattgttgatgttccataaacctttcaactgttggaaaa-caataa |
366 |
Q |
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||||||||| | || | |||||||||||||| || |||||| ||||||||| ||||||| |||||| ||| |||| || |||||||| |||| |||||| |
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| T |
2088674 |
agtgaaagtcacccttcagctccaaagcctcgttacataagctccttaaatttgcattgtagatgttacatgaacccttaaactgttgcaaaaccaataa |
2088575 |
T |
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| Q |
367 |
cat |
369 |
Q |
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||| |
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| T |
2088574 |
cat |
2088572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 132 - 317
Target Start/End: Complemental strand, 2048359 - 2048176
Alignment:
| Q |
132 |
gatcaaaatgatccccaaattccaatctaattgttttcaacttcacaaagcagtgctcaattgagaaagatgcaacttaaacataatagaacaaattgct |
231 |
Q |
| |
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|||||||||||| | ||||| |||| |||| ||||||||| ||||||||||| || | || ||| || ||||||||||||| |||| || ||| || |
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| T |
2048359 |
gatcaaaatgattcacaaataccaaagtaataattttcaactccacaaagcagtactaagtttagagag-ggcaacttaaacattatag-accaataact |
2048262 |
T |
|
| Q |
232 |
aaatatataccctaggaatgtaaaagatgctgaacaagtgaaagttatcccttagctccaaagcctcattgcataagttccttaaa |
317 |
Q |
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||||| ||||||||||||||| || || ||||||||||||| ||||||||||||||||| |||||||||||||||| |
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| T |
2048261 |
aaataaataccctaggaatgtgttgaatctggagtgagtgaaagttatctgctagctccaaagcctcatcgcataagttccttaaa |
2048176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 319
Target Start/End: Complemental strand, 2054498 - 2054417
Alignment:
| Q |
238 |
ataccctaggaatgtaaaagatgctgaacaagtgaaagttatcccttagctccaaagcctcattgcataagttccttaaata |
319 |
Q |
| |
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||||||||||||||| ||||||||| |||||||| | ||| | |||| ||||||||||||||| ||||||| |||||| |
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| T |
2054498 |
ataccctaggaatgtgttggatgctgaatgagtgaaagctttccttcagctgcaaagcctcattgcacaagttccataaata |
2054417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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