View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8428_low_5 (Length: 397)
Name: NF8428_low_5
Description: NF8428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8428_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 15 - 253
Target Start/End: Original strand, 46442667 - 46442905
Alignment:
| Q |
15 |
gaacaatctcttattagaggtaacttatttttatctatttaagagcttattttcataagcaaaggagtacaaagactaatccaacctataatacaaaaat |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46442667 |
gaacaatctcttattagaggtaacttatttttatctatttaagagcttattttcataagcaaaggagtacaaagactaatccaacctataatacaaaaat |
46442766 |
T |
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| Q |
115 |
ggatcgattatttgcattcatactactcctttaaatattgttgaaccatttccaagaagtgttcttaatttgctctaccaacattgtgatatctggcatt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46442767 |
ggatcgattatttgcattcatactactcctttaaatattgttgaaccatttccaagaagtgttcttaatttgctctaccaacattgtgatatctggcatt |
46442866 |
T |
|
| Q |
215 |
gctgttctaaaaacacattgttttgaagctccaaatgct |
253 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
46442867 |
gctgttctaaaaacacattgttttgaagctccaaatgct |
46442905 |
T |
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