View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8428_low_9 (Length: 304)

Name: NF8428_low_9
Description: NF8428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8428_low_9
NF8428_low_9
[»] chr3 (1 HSPs)
chr3 (21-304)||(54734284-54734572)


Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 21 - 304
Target Start/End: Complemental strand, 54734572 - 54734284
Alignment:
Q  21 gtttggagttgtggcagccagcttatgcagagttggaaacaagcacagatcatgcaaaacttgactggcaataagcaaaccagtcttgtgcggtctcgtc 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  54734572 gtttggagttgtggcagccagcttatgcagagttggaaacaagcacagatcatgcaaaactagactgccaataagcaaaccagtcttgtgcggtctcgtc 54734473  T
Q  121 tttgcaattgcaattcttctgaataacaaattatcattaatgaaaaagatagttcaaaatcttttannnnnnnaaggaagttaaaaatcttttatttcct 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||  |||||||||||||||||    
T  54734472 tttgcaattgcaattcttctgaataacaaattatcattaatgaaaaagatagttcaaaatctttt-tttttttaaggaagtccaaaatcttttatttcct 54734374  T
Q  221 ttaaatattattg----tatagataatag--atacatgaacttgcaggggtgtgttaggaaaaagtagagtgctaaatgctaatatgaac 304  Q
    |||||||||||||    ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54734373 ttaaatattattgtatatatagataatagatatacatgaacttgcaggggtgtgttaggaaaaagtagagtgctaaatgctaatatgaac 54734284  T

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