View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8429_high_4 (Length: 234)
Name: NF8429_high_4
Description: NF8429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8429_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 12 - 232
Target Start/End: Original strand, 11271027 - 11271247
Alignment:
| Q |
12 |
acatcatggacagtttcttgatacctctcatcatcatgtaacaatgtctccaaagtcaaacgcctttcttcgtgtgttgttctttgatcgaaacgtccgg |
111 |
Q |
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| T |
11271027 |
acatcatggacagtttcttgatacctctcatcatcatgtaacaatgtctccaaagtcaaacgcctttcttcgtgtgttgttctttgatcgaaacgtccgg |
11271126 |
T |
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| Q |
112 |
cattaatcacctcatcagccatatctatcttatattgctgaatgttgttccttatgaggccctcaatggatcctatgtagcgatccttgccggcaagttc |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11271127 |
cattaatcacctcatcagccatatctatcttatattgctgaatgttgttccttatgaggccctcaatggatcctatgtagcgatccttgccggcaagttc |
11271226 |
T |
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| Q |
212 |
atcctccagataaacagtgcc |
232 |
Q |
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| T |
11271227 |
atcctccagatcgacagtgcc |
11271247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 12 - 232
Target Start/End: Complemental strand, 29521888 - 29521668
Alignment:
| Q |
12 |
acatcatggacagtttcttgatacctctcatcatcatgtaacaatgtctccaaagtcaaacgcctttcttcgtgtgttgttctttgatcgaaacgtccgg |
111 |
Q |
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||||| |||||||||||||| |||| || |||||||| || |||||||||||||||||||| || ||||| |||||||| |||||||| |||||||| | |
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| T |
29521888 |
acatcgtggacagtttcttggcacctttcttcatcatgcaataatgtctccaaagtcaaacgtctctcttcatgtgttgtcctttgatcaaaacgtccag |
29521789 |
T |
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| Q |
112 |
cattaatcacctcatcagccatatctatcttatattgctgaatgttgttccttatgaggccctcaatggatcctatgtagcgatccttgccggcaagttc |
211 |
Q |
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| T |
29521788 |
cattaataacctcatcagccatatctatcttatattgctgaatattgctccttatgaggctctcaatggatcctatatatcgatccttacctgcaagctc |
29521689 |
T |
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| Q |
212 |
atcctccagataaacagtgcc |
232 |
Q |
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|||||||| || || |||||| |
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| T |
29521688 |
atcctccatatcaatagtgcc |
29521668 |
T |
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