View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8429_low_3 (Length: 340)
Name: NF8429_low_3
Description: NF8429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8429_low_3 |
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| [»] scaffold0793 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 705289 - 704963
Alignment:
| Q |
1 |
ggatttgttgcaaccacaaatttcacgcattcacgcaattaatacatcgaagaccgttaaattaagatctgaattcggaaggtccatatttcaagctcgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
705289 |
ggatttgttgcaaccacaaatttcacgcattcacgcaattaatacatcgaagaccgttaaattaagatctgaattcggaaggtccatatttcaagctcgg |
705190 |
T |
|
| Q |
101 |
tattttagaatgnnnnnnnnnnnnnnnnnctacttacattatgtacgatccgatttcaactcaacggtcactgatgtgctaactacgtgaatttgtgact |
200 |
Q |
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|||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
705189 |
tattttagaatgaaaaaaaaaaaaaaaaactacttacattatgtaagatccgatttcaactcaacggtcactgatgtgctaactacgtgaatttgtgact |
705090 |
T |
|
| Q |
201 |
gcagtaaatccaaatcccatgttgtagtacggtagggaatctaggtccatacactaggaagttgtacattgatgctctacataagttccaatcaaacaag |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
705089 |
gcagtaaatccaaatcccatgttgtagtacggtagggaatctaggtccatacactaggaagttgtacattggtgctctacataagttccaatcaaacaag |
704990 |
T |
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| Q |
301 |
tatgcaatgcaattctatctctctctg |
327 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
704989 |
tatgcaatgcaattctatctctctctg |
704963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 324
Target Start/End: Original strand, 731366 - 731696
Alignment:
| Q |
1 |
ggatttgttgcaaccacaaatttcacgcattcacgcaattaatacatcgaagaccgttaaattaagatctgaattcggaaggtccatatttcaagctcgg |
100 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
731366 |
ggatttgttgcttccacaaatttcacgcattcacgcaattaatacatcgaagaccgttaaattaagatctgaattcggaaggtccatatttcaagctcgg |
731465 |
T |
|
| Q |
101 |
tattttagaatgnnnnnnnnnnnnnnnnnctacttacattatgtacgatccgatttcaactcaacggtcactgatgtgctaactacgtgaatttgtgact |
200 |
Q |
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| T |
731466 |
tattttagaatgaaaaaaaaaaa------ctacttacattatgtacgatccgatttcaactcaacggtcactgatgtgctaactacgtgaatttgtgact |
731559 |
T |
|
| Q |
201 |
gcagtaaatccaaatcccatgttgtagtac-------------ggtagggaatctaggtccatacactaggaagttgtacattgatgctctacataagtt |
287 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
731560 |
gcagtaaatccaaatcccatgttgtagtacggtagggaatctaggtagggaatctaggtccatacactaggaagttgtacattgatgctctacataagtt |
731659 |
T |
|
| Q |
288 |
ccaatcaaacaagtatgcaatgcaattctatctctct |
324 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
731660 |
ccaatcaaacaagtatgcaatgcaattctatctctct |
731696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 130 - 327
Target Start/End: Complemental strand, 687793 - 687596
Alignment:
| Q |
130 |
ctacttacattatgtacgatccgatttcaactcaacggtcactgatgtgctaactacgtgaatttgtgactgcagtaaatccaaatcccatgttgtagta |
229 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
687793 |
ctacttacattatgtaagatccgatttcaactcaacggtcactgatgtgctaactacgtgaatttgtgactgcagtaaatccaaatcccatgttgtagta |
687694 |
T |
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| Q |
230 |
cggtagggaatctaggtccatacactaggaagttgtacattgatgctctacataagttccaatcaaacaagtatgcaatgcaattctatctctctctg |
327 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
687693 |
cggtagggaatctaggtccatacactaggaagttgtacattggtgctctacataagttccaatcaaacaagtatgcaatgcaattctatctctctctg |
687596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 249 - 327
Target Start/End: Original strand, 730644 - 730722
Alignment:
| Q |
249 |
atacactaggaagttgtacattgatgctctacataagttccaatcaaacaagtatgcaatgcaattctatctctctctg |
327 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
730644 |
atacactaggaagttgtacattggtgctctacataagttccaatcaaacaagtatgcaatgcaattctatctctctctg |
730722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0793 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: scaffold0793
Description:
Target: scaffold0793; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 2605 - 2284
Alignment:
| Q |
1 |
ggatttgttgcaaccacaaatttcacgcattcacgcaattaatacatcgaagaccgttaaattaagatctgaattcggaaggtccatatttcaagctcgg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2605 |
ggatttgttgcaaccacaaatttcacgcattcacgcaattaatacatcgaagaccgttaaattaagatctgaattcggaaggtccatatttcaagctcgg |
2506 |
T |
|
| Q |
101 |
tattttagaatgnnnnnnnnnnnnnnnnnctacttacattatgtacgatccgatttcaactcaacggtcactgatgtgctaactacgtgaatttgtgact |
200 |
Q |
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|||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2505 |
tattttagaatgaaaaaaaaaaaa-----ctacttacattatgtacgatccgatttgaactcaacggtcactgatgtgctaactacgtgaatttgtgact |
2411 |
T |
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| Q |
201 |
gcagtaaatccaaatcccatgttgtagtacggtagggaatctaggtccatacactaggaagttgtacattgatgctctacataagttccaatcaaacaag |
300 |
Q |
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| T |
2410 |
gcagtaaatccaaatcccatgttgtagtatggtagggaatctaggtccatacactaggaagttgtacattggtgctctacataagttccaatcaaacaag |
2311 |
T |
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| Q |
301 |
tatgcaatgcaattctatctctctctg |
327 |
Q |
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||||||||||||||||||||||||||| |
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| T |
2310 |
tatgcaatgcaattctatctctctctg |
2284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0793; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 130 - 327
Target Start/End: Complemental strand, 3367 - 3170
Alignment:
| Q |
130 |
ctacttacattatgtacgatccgatttcaactcaacggtcactgatgtgctaactacgtgaatttgtgactgcagtaaatccaaatcccatgttgtagta |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3367 |
ctacttacattatgtacgatccgatttcaactcaacggtcactgatgtgctaactacgtgaatttgtgactgcagtaaatccaaatcccatgttgtagta |
3268 |
T |
|
| Q |
230 |
cggtagggaatctaggtccatacactaggaagttgtacattgatgctctacataagttccaatcaaacaagtatgcaatgcaattctatctctctctg |
327 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3267 |
cggtagggaatctaggtccatacactaggaagttgtacattggtgctctacataagttccaatcaaacaagtatgcaatgcaattctatctctctctg |
3170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 216
Target Start/End: Original strand, 5045966 - 5046014
Alignment:
| Q |
168 |
tcactgatgtgctaactacgtgaatttgtgactgcagtaaatccaaatc |
216 |
Q |
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|||||||| ||||||||||||||||||||||| ||| | ||||||||| |
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| T |
5045966 |
tcactgatatgctaactacgtgaatttgtgaccgcatcagatccaaatc |
5046014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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