View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8429_low_4 (Length: 320)
Name: NF8429_low_4
Description: NF8429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8429_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 286; Significance: 1e-160; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 15 - 304
Target Start/End: Original strand, 376811 - 377100
Alignment:
| Q |
15 |
tggaccatgtacaacaacaagggtcagtggttgatttacaagatgtcttcaatcgcttcacatttgataacatttgttctgtagttcttggatgcgatcc |
114 |
Q |
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| T |
376811 |
tggaccatgtacaacaacaagggtcagtggttgatttacaagatgtcttcaatcgcttcacatttgataacatttgttctgtagttcttggatgcgatcc |
376910 |
T |
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| Q |
115 |
taactgtctttccattgaattcccagacgttgcttgtgagaaggcttttgaccaaattgaagaatgcatattctataggcatgttgtgccaagaagtgtt |
214 |
Q |
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| T |
376911 |
taactgtctttccattgacttcccagacgttgcttgtgagaaggcttttgaccaaattgaagaatgcatattctataggcatgttgtgccaagaagtgtt |
377010 |
T |
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| Q |
215 |
tggaggttgcaacaattacttcaagttggtcaagagaaaaagatgaccaaagcatgcaaagaatttgatcaatttatatattcaaatata |
304 |
Q |
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| T |
377011 |
tggaggttgcaacaattacttcaagttggtcaagagaaaaagatgaccaaagcatgcaaagaatttgatcaatttatatattcaaatata |
377100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 17 - 304
Target Start/End: Complemental strand, 347683 - 347396
Alignment:
| Q |
17 |
gaccatgtacaacaacaagggtcagtggttgatttacaagatgtcttcaatcgcttcacatttgataacatttgttctgtagttcttggatgcgatccta |
116 |
Q |
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| T |
347683 |
gaccatgtacaacaacaagggtcagtggtggatttacaagatgtcttcaatcgtttcacattcaacaacatttgttccgtagttcttggatgtgatccca |
347584 |
T |
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| Q |
117 |
actgtctttccattgaattcccagacgttgcttgtgagaaggcttttgaccaaattgaagaatgcatattctataggcatgttgtgccaagaagtgtttg |
216 |
Q |
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| T |
347583 |
attgtctttcgattgattttcccgatgtcgcgtgtgagaaagcttttaaccaaattgaagagtgcatattctatagacatatagtgcctaaaagtgtttg |
347484 |
T |
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| Q |
217 |
gaggttgcaacaattacttcaagttggtcaagagaaaaagatgaccaaagcatgcaaagaatttgatcaatttatatattcaaatata |
304 |
Q |
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|| ||||||| ||| |||||| ||||| |||||||||| ||||||||||||||||||| ||||||||||||| ||||| |||||||| |
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| T |
347483 |
gaagttgcaaaaatggcttcaaattggtgaagagaaaaaaatgaccaaagcatgcaaagtatttgatcaatttgtatatgcaaatata |
347396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 15 - 304
Target Start/End: Complemental strand, 356344 - 356055
Alignment:
| Q |
15 |
tggaccatgtacaacaacaagggtcagtggttgatttacaagatgtcttcaatcgcttcacatttgataacatttgttctgtagttcttggatgcgatcc |
114 |
Q |
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| T |
356344 |
tggaccatgtacaacaacaaggctcagtggtggatttacaagatgtcttcaatcgtttcacattcgacaacatttgttccgtggttcttggatgtgatcc |
356245 |
T |
|
| Q |
115 |
taactgtctttccattgaattcccagacgttgcttgtgagaaggcttttgaccaaattgaagaatgcatattctataggcatgttgtgccaagaagtgtt |
214 |
Q |
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||| |||||||||||||| || || || || || |||||||||||||| ||||||| ||||| ||||||||||||| ||| ||||| | ||||||| |
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| T |
356244 |
taattgtctttccattgattttcccgatgtcgcgtgtgagaaggctttcaaccaaatcgaagagggcatattctatagacataaagtgcctaaaagtgtt |
356145 |
T |
|
| Q |
215 |
tggaggttgcaacaattacttcaagttggtcaagagaaaaagatgaccaaagcatgcaaagaatttgatcaatttatatattcaaatata |
304 |
Q |
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| T |
356144 |
tggaagttgcaaaaatggcttcaaattggtgaagagaaaaatatgaccaaggcatgcaaaacctatgatcaatttgtatatgcaaatata |
356055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 25 - 297
Target Start/End: Original strand, 337040 - 337312
Alignment:
| Q |
25 |
acaacaacaagggtcagtggttgatttacaagatgtcttcaatcgcttcacatttgataacatttgttctgtagttcttggatgcgatcctaactgtctt |
124 |
Q |
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||||||| | ||||| ||||| ||||||||||| || |||||||||||||||||||||||||||||||| || |||||||| || ||||| |||||| |
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| T |
337040 |
acaacaaaatgggtcggtggtcgatttacaagacgtgttcaatcgcttcacatttgataacatttgttcaataattcttggacatgaccctaattgtctt |
337139 |
T |
|
| Q |
125 |
tccattgaattcccagacgttgcttgtgagaaggcttttgaccaaattgaagaatgcatattctataggcatgttgtgccaagaagtgtttggaggttgc |
224 |
Q |
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|||||||| ||||| || |||| || |||||||||||| ||||| |||||||| ||| ||||| || || |||||| ||||||||| ||||| |
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| T |
337140 |
tccattgatttccctgaagttgtgtgcgagaaggcttttaaccaagctgaagaatccatcttctacagacacactgtgccggcttgtgtttggaagttgc |
337239 |
T |
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| Q |
225 |
aacaattacttcaagttggtcaagagaaaaagatgaccaaagcatgcaaagaatttgatcaatttatatattc |
297 |
Q |
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|| | |||||| | ||| |||||||||| ||||| |||||||||||| |||||||||||| ||||||| |
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| T |
337240 |
aaagttggcttcaaatcggtgaagagaaaaaaatgactgaagcatgcaaagtatttgatcaattcctatattc |
337312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 24 - 169
Target Start/End: Original strand, 341077 - 341222
Alignment:
| Q |
24 |
tacaacaacaagggtcagtggttgatttacaagatgtcttcaatcgcttcacatttgataacatttgttctgtagttcttggatgcgatcctaactgtct |
123 |
Q |
| |
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|||||||| ||||||| ||||| |||||||||||||| |||||||| |||||||| ||||||||||||| || |||||||| ||||| || ||||| |
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| T |
341077 |
tacaacaaaaagggtcggtggtcgatttacaagatgtgttcaatcgattcacattcgataacatttgtttgataattcttggacatgatccaaattgtct |
341176 |
T |
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| Q |
124 |
ttccattgaattcccagacgttgcttgtgagaaggcttttgaccaa |
169 |
Q |
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||| | || ||||| || ||| | | ||||||||||||| ||||| |
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| T |
341177 |
ttcaacagatttccccgaagttccatctgagaaggcttttaaccaa |
341222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 332126 - 332191
Alignment:
| Q |
25 |
acaacaacaagggtcagtggttgatttacaagatgtcttcaatcgcttcacatttgataacatttg |
90 |
Q |
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||||||| ||||||| |||| |||||||||||||| ||||||||||||||||| ||||||||||| |
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| T |
332126 |
acaacaaaaagggtcgatggtcgatttacaagatgtattcaatcgcttcacattcgataacatttg |
332191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 114 - 288
Target Start/End: Original strand, 332875 - 333049
Alignment:
| Q |
114 |
ctaactgtctttccattgaattcccagacgttgcttgtgagaaggcttttgaccaaattgaagaatgcatattctataggcatgttgtgccaagaagtgt |
213 |
Q |
| |
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||||||||||||| ||||| || || | ||||| ||||||||||||||| ||||| |||||||||||| |||||||| || | ||||| |||| |
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| T |
332875 |
ctaactgtctttctattgattttcctcaagttgcgtgtgagaaggcttttaaccaagctgaagaatgcatcttctatagacacatcgtgcccgtttgtgt |
332974 |
T |
|
| Q |
214 |
ttggaggttgcaacaattacttcaagttggtcaagagaaaaagatgaccaaagcatgcaaagaatttgatcaatt |
288 |
Q |
| |
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|| || | ||||| ||| |||||| |||| |||||||||| |||||| | |||||||||| ||||||| |||| |
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| T |
332975 |
ttagaagatgcaaaaatggcttcaaattggggaagagaaaaaaatgaccgaggcatgcaaagtatttgataaatt |
333049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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