View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8429_low_5 (Length: 301)

Name: NF8429_low_5
Description: NF8429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8429_low_5
NF8429_low_5
[»] chr3 (2 HSPs)
chr3 (1-294)||(19607165-19607458)
chr3 (126-260)||(4576624-4576755)
[»] chr1 (1 HSPs)
chr1 (2-294)||(32604599-32604888)
[»] chr2 (3 HSPs)
chr2 (2-294)||(21022890-21023179)
chr2 (126-260)||(7230748-7230879)
chr2 (126-260)||(7230422-7230553)
[»] chr8 (3 HSPs)
chr8 (2-294)||(24956496-24956785)
chr8 (2-294)||(18176326-18176615)
chr8 (126-223)||(29564540-29564634)
[»] scaffold0005 (1 HSPs)
scaffold0005 (126-252)||(175922-176045)
[»] chr4 (2 HSPs)
chr4 (126-252)||(14641247-14641370)
chr4 (126-260)||(26110691-26110822)
[»] scaffold0020 (1 HSPs)
scaffold0020 (126-223)||(131180-131274)


Alignment Details
Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 19607458 - 19607165
Alignment:
Q  1 agtgtgccatttgaatttaatggcaaaaatactactacaaatgtgccacaagaaataattgactctgatgatagtgaatttgatattggtgaccaattta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19607458 agtgtgccatttgaatttaatggcaaaaatactactacaaatgtgccacaagaaataattgactctgatgatagtgaatttgatattggtgaccaattta 19607359  T
Q  101 tccctctggaaaatactaaacccaaaaagtaaagaaaggtttcaccagatattaatggagagaaagtgacaaagggaaatgcaaaggttgggacgacaac 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||    
T  19607358 tccctctggaaaatactaaacccaaaaagtaaagaaaggtttcaccagatattaattgagagaaagtgacaaagggaaaggcaaaggttgggacgacaac 19607259  T
Q  201 aactatgagaaacacatttgagcagttaactgaagcatctgaaggtcataatgaagttgaaaatgctcaaattgcggtcacctctgatgtccat 294  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  19607258 aactatgagaaacacatttgagcggttaactgaagcatctgaaggtcataatgaagttgaaaaggctcaaattgcggtcacctctaatgtccat 19607165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 126 - 260
Target Start/End: Complemental strand, 4576755 - 4576624
Alignment:
Q  126 aaagtaaagaaaggtttcaccagatattaatggagagaaagtgacaaagggaaatgcaaaggttgggacgacaacaactatgagaaacacatttgagcag 225  Q
    |||| ||||||| ||||||||||||||    || | |||||| |||||||| ||  |||||| |||||| |||||||||||||||| |||||||||||      
T  4576755 aaagaaaagaaatgtttcaccagatatg---ggtgtgaaagttacaaagggtaagacaaaggctgggactacaacaactatgagaatcacatttgagcga 4576659  T
Q  226 ttaactgaagcatctgaaggtcataatgaagttga 260  Q
    |||  | ||||| | ||||||||||||||| ||||    
T  4576658 ttagttcaagcagcagaaggtcataatgaaattga 4576624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 2 - 294
Target Start/End: Original strand, 32604599 - 32604888
Alignment:
Q  2 gtgtgccatttgaatttaatggcaaaaatactactacaaatgtgccacaagaaataattgactctgatgatagtgaatttgatattggtgaccaatttat 101  Q
    |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||     
T  32604599 gtgtgccattagaatctaatggcaaaaatactactacaaatgtgccacaagaaataattgactctgatgatagtgaatttgatattggtgaccactttag 32604698  T
Q  102 ccctctggaaaatactaaacccaaaaagtaaagaaaggtttcaccagatattaatggagagaaagtgacaaagggaaatgcaaaggttgggacgacaaca 201  Q
    |||| ||||||||||| ||||||||||| ||||||||||||||||| ||||   |||||||||||||||||||||||| |||||||||||||| ||||||    
T  32604699 ccctgtggaaaatactcaacccaaaaagaaaagaaaggtttcaccaaatat---tggagagaaagtgacaaagggaaaggcaaaggttgggacaacaaca 32604795  T
Q  202 actatgagaaacacatttgagcagttaactgaagcatctgaaggtcataatgaagttgaaaatgctcaaattgcggtcacctctgatgtccat 294  Q
    ||||||||||| |||||||||| ||||  | |||||  |||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||    
T  32604796 actatgagaaaaacatttgagcggttagttaaagcagatgaaggtcataatgaagttgaaaaggctcaaattgcggccacctctcatgtccat 32604888  T

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Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 2 - 294
Target Start/End: Complemental strand, 21023179 - 21022890
Alignment:
Q  2 gtgtgccatttgaatttaatggcaaaaatactactacaaatgtgccacaagaaataattgactctgatgatagtgaatttgatattggtgaccaatttat 101  Q
    |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||     
T  21023179 gtgtgccattagaatctaatggcaaaaatactactacaaatgtgccacaagaaataattgactctgatgatagtgaatttaatattggtgaccactttag 21023080  T
Q  102 ccctctggaaaatactaaacccaaaaagtaaagaaaggtttcaccagatattaatggagagaaagtgacaaagggaaatgcaaaggttgggacgacaaca 201  Q
    |||| ||||| ||||| ||||||||||| ||||||||||||||||| ||||   |||||||||||||||||||||||| |||||||||||||| ||||||    
T  21023079 ccctatggaatatactcaacccaaaaagaaaagaaaggtttcaccaaatat---tggagagaaagtgacaaagggaaaggcaaaggttgggacaacaaca 21022983  T
Q  202 actatgagaaacacatttgagcagttaactgaagcatctgaaggtcataatgaagttgaaaatgctcaaattgcggtcacctctgatgtccat 294  Q
    ||||||||||| |||||||||| ||||  | |||||  |||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||    
T  21022982 actatgagaaaaacatttgagcggttagtttaagcagttgaaggtcataatgaagttgaaaaggctcaaattgcggccacctctcatgtccat 21022890  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 126 - 260
Target Start/End: Original strand, 7230748 - 7230879
Alignment:
Q  126 aaagtaaagaaaggtttcaccagatattaatggagagaaagtgacaaagggaaatgcaaaggttgggacgacaacaactatgagaaacacatttgagcag 225  Q
    |||| ||||||||||||||||||||||    || |||||||| |||||||| ||  | |||||||||||  |||||||||||||||||||||||||||      
T  7230748 aaagaaaagaaaggtttcaccagatatg---ggtgagaaagttacaaagggtaagaccaaggttgggactgcaacaactatgagaaacacatttgagcga 7230844  T
Q  226 ttaactgaagcatctgaaggtcataatgaagttga 260  Q
    |||  | ||||||| ||| ||||||||||| ||||    
T  7230845 ttagttcaagcatcagaatgtcataatgaaattga 7230879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 126 - 260
Target Start/End: Original strand, 7230422 - 7230553
Alignment:
Q  126 aaagtaaagaaaggtttcaccagatattaatggagagaaagtgacaaagggaaatgcaaaggttgggacgacaacaactatgagaaacacatttgagcag 225  Q
    |||| ||| ||||||||||||||||||    || |||||||| |||||||| ||  | |||||||||||  |||||||||||||||||||||||||||      
T  7230422 aaagaaaaaaaaggtttcaccagatatg---ggtgagaaagttacaaagggtaagaccaaggttgggactgcaacaactatgagaaacacatttgagcga 7230518  T
Q  226 ttaactgaagcatctgaaggtcataatgaagttga 260  Q
    |||  | ||||||| ||| ||||||||||| ||||    
T  7230519 ttagttcaagcatcagaatgtcataatgaaattga 7230553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 183; Significance: 5e-99; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 2 - 294
Target Start/End: Original strand, 24956496 - 24956785
Alignment:
Q  2 gtgtgccatttgaatttaatggcaaaaatactactacaaatgtgccacaagaaataattgactctgatgatagtgaatttgatattggtgaccaatttat 101  Q
    |||| |||||||||| || || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||     
T  24956496 gtgtaccatttgaatctagtgacaaaaatactactacagatgtgccacaagaaataattgactctgatgatagtgaatttgatattggtgaccactttag 24956595  T
Q  102 ccctctggaaaatactaaacccaaaaagtaaagaaaggtttcaccagatattaatggagagaaagtgacaaagggaaatgcaaaggttgggacgacaaca 201  Q
    |||| ||||||||||| ||||||||||| ||||||||||||||||| ||||   ||||| |||||||||||||||||| ||||||||||||||  |||||    
T  24956596 ccctgtggaaaatactcaacccaaaaagaaaagaaaggtttcaccatatat---tggagtgaaagtgacaaagggaaaggcaaaggttgggacttcaaca 24956692  T
Q  202 actatgagaaacacatttgagcagttaactgaagcatctgaaggtcataatgaagttgaaaatgctcaaattgcggtcacctctgatgtccat 294  Q
    | ||||||||| |||||||||| ||||  ||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||    
T  24956693 attatgagaaaaacatttgagcggttagttgaagcagctgaaggtcataatgaagttgaaaaggctcaaattgcggccacctctcatgtccat 24956785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 2 - 294
Target Start/End: Complemental strand, 18176615 - 18176326
Alignment:
Q  2 gtgtgccatttgaatttaatggcaaaaatactactacaaatgtgccacaagaaataattgactctgatgatagtgaatttgatattggtgaccaatttat 101  Q
    ||||||||||||| | || ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||     
T  18176615 gtgtgccatttgattgtagtggcaaaaatactactacagatgtgccacaagaaataattgactccgatgatagtgaatttgatattggtgaccactttag 18176516  T
Q  102 ccctctggaaaatactaaacccaaaaagtaaagaaaggtttcaccagatattaatggagagaaagtgacaaagggaaatgcaaaggttgggacgacaaca 201  Q
    |||| ||||||||||| ||||||||||| ||||||| |||||||||| |||   |||||||||||||||||||||||| |||||||||||||| ||||||    
T  18176515 ccctatggaaaatactcaacccaaaaagaaaagaaaagtttcaccagctat---tggagagaaagtgacaaagggaaaggcaaaggttgggacaacaaca 18176419  T
Q  202 actatgagaaacacatttgagcagttaactgaagcatctgaaggtcataatgaagttgaaaatgctcaaattgcggtcacctctgatgtccat 294  Q
    ||||||||||  |||||||||| ||||  ||||||| | ||||||||||||||||||||||| ||||||||||| | ||||||| ||||||||    
T  18176418 actatgagaagaacatttgagcggttagttgaagcagccgaaggtcataatgaagttgaaaaggctcaaattgcagccacctctcatgtccat 18176326  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 126 - 223
Target Start/End: Original strand, 29564540 - 29564634
Alignment:
Q  126 aaagtaaagaaaggtttcaccagatattaatggagagaaagtgacaaagggaaatgcaaaggttgggacgacaacaactatgagaaacacatttgagc 223  Q
    |||| ||||||||||||||||||||||    || |||||||| |||||||| ||    |||||||||||  ||||||| |||||||||||||||||||    
T  29564540 aaagaaaagaaaggtttcaccagatatg---ggtgagaaagttacaaagggtaagaacaaggttgggactgcaacaacaatgagaaacacatttgagc 29564634  T

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Target: scaffold0005 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 126 - 252
Target Start/End: Complemental strand, 176045 - 175922
Alignment:
Q  126 aaagtaaagaaaggtttcaccagatattaatggagagaaagtgacaaagggaaatgcaaaggttgggacgacaacaactatgagaaacacatttgagcag 225  Q
    |||| ||||||||||||||||||||||    || |||||||| |||||||| ||  | |||||||||||  |||||||||||||||||||||||||||      
T  176045 aaagaaaagaaaggtttcaccagatatg---ggtgagaaagttacaaagggtaagaccaaggttgggactgcaacaactatgagaaacacatttgagcga 175949  T
Q  226 ttaactgaagcatctgaaggtcataat 252  Q
    |||  | ||||| | ||||||||||||    
T  175948 ttagttcaagcagcagaaggtcataat 175922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 126 - 252
Target Start/End: Original strand, 14641247 - 14641370
Alignment:
Q  126 aaagtaaagaaaggtttcaccagatattaatggagagaaagtgacaaagggaaatgcaaaggttgggacgacaacaactatgagaaacacatttgagcag 225  Q
    |||| ||||||||||||||||||||||    || |||||||| |||||||| ||  | |||||||||||  |||||||||||||||||||||||||||      
T  14641247 aaagaaaagaaaggtttcaccagatatg---ggtgagaaagttacaaagggtaagaccaaggttgggactgcaacaactatgagaaacacatttgagcga 14641343  T
Q  226 ttaactgaagcatctgaaggtcataat 252  Q
    |||  | ||||| | ||||||||||||    
T  14641344 ttagttcaagcagcagaaggtcataat 14641370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 126 - 260
Target Start/End: Original strand, 26110691 - 26110822
Alignment:
Q  126 aaagtaaagaaaggtttcaccagatattaatggagagaaagtgacaaagggaaatgcaaaggttgggacgacaacaactatgagaaacacatttgagcag 225  Q
    |||| ||||||||||||||||||||||    || |||||||| |||||||| ||    |||||||||||  ||||||| |||||||||||||||||||      
T  26110691 aaagaaaagaaaggtttcaccagatatg---ggtgagaaagttacaaagggtaagatcaaggttgggactgcaacaacgatgagaaacacatttgagcga 26110787  T
Q  226 ttaactgaagcatctgaaggtcataatgaagttga 260  Q
    |||  | ||||| | ||||||||||||||| ||||    
T  26110788 ttagttcaagcagcagaaggtcataatgaaattga 26110822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 126 - 223
Target Start/End: Original strand, 131180 - 131274
Alignment:
Q  126 aaagtaaagaaaggtttcaccagatattaatggagagaaagtgacaaagggaaatgcaaaggttgggacgacaacaactatgagaaacacatttgagc 223  Q
    |||| ||||||||||||||||||||||    || |||||||| |||||| | ||  | |||||||||||  |||||||||||||||||||||||||||    
T  131180 aaagaaaagaaaggtttcaccagatatg---ggtgagaaagttacaaagtgtaagaccaaggttgggactgcaacaactatgagaaacacatttgagc 131274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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