View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8429_low_6 (Length: 254)
Name: NF8429_low_6
Description: NF8429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8429_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 6360836 - 6361072
Alignment:
| Q |
1 |
aatgatttcaataaaatcccaagaatacaagataggtgtgtggaggcttgtgaaggttgcaaaagatgatttgtatcagagcccagcaatgaatgggatt |
100 |
Q |
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| T |
6360836 |
aatgatttcaataaaatcccaagaatacaagataggtgtgtggaggcttgtgaaggttgcaaaagatgatttgtatcagagcccagcaatgaatgggatt |
6360935 |
T |
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| Q |
101 |
ataccaaaatatttagtccatagactatttccaaattcacaattcagtatttggatagatgcaaagttgcaactaatggttgatcctttgttgttgattc |
200 |
Q |
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| T |
6360936 |
ataccaaaatatttaatccatagactatttccaaattcacaattcagtatttggatagatgcaaagttgcaactcatggttgatcctttgttgttgattc |
6361035 |
T |
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| Q |
201 |
attcacttgttataaatgagaatgtagatatggctat |
237 |
Q |
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| T |
6361036 |
attcacttgttataaaggagaatgtagatatggctat |
6361072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 5 - 136
Target Start/End: Complemental strand, 13033892 - 13033761
Alignment:
| Q |
5 |
atttcaataaaatcccaagaatacaagataggtgtgtggaggcttgtgaaggttgcaaaagatgatttgtatcagagcccagcaatgaatgggattatac |
104 |
Q |
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|||| |||||||||| ||| | ||||||||||||||| |||| |||||||||||||||||||||||||||| |||| | || |||||| |||||||| |
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| T |
13033892 |
attttaataaaatccaaagcaaacaagataggtgtgtagaggattgtgaaggttgcaaaagatgatttgtaacagaatcaagtgatgaatatgattatac |
13033793 |
T |
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| Q |
105 |
caaaatatttagtccatagactatttccaaat |
136 |
Q |
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| T |
13033792 |
aaaaatatttaatccatagactatttccaaat |
13033761 |
T |
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