View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8429_low_7 (Length: 246)

Name: NF8429_low_7
Description: NF8429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8429_low_7
NF8429_low_7
[»] chr3 (27 HSPs)
chr3 (16-246)||(28150937-28151167)
chr3 (16-246)||(28003186-28003425)
chr3 (80-246)||(27979541-27979707)
chr3 (128-246)||(11420146-11420264)
chr3 (182-246)||(27919515-27919579)
chr3 (137-239)||(28184908-28185010)
chr3 (192-246)||(17745340-17745394)
chr3 (192-246)||(19046660-19046714)
chr3 (135-246)||(28149039-28149150)
chr3 (135-224)||(28134742-28134831)
chr3 (146-246)||(28480607-28480707)
chr3 (146-246)||(28509790-28509890)
chr3 (16-110)||(11420005-11420098)
chr3 (192-246)||(26114073-26114127)
chr3 (192-246)||(28036614-28036668)
chr3 (147-241)||(28082856-28082950)
chr3 (195-242)||(27459747-27459794)
chr3 (16-54)||(27919376-27919414)
chr3 (16-97)||(27459906-27459987)
chr3 (192-240)||(26202529-26202577)
chr3 (79-110)||(17745497-17745528)
chr3 (79-110)||(19046817-19046848)
chr3 (196-246)||(26128829-26128879)
chr3 (31-95)||(26236438-26236502)
chr3 (128-168)||(27459806-27459846)
chr3 (128-164)||(27919476-27919512)
chr3 (137-217)||(28160356-28160436)
[»] chr2 (3 HSPs)
chr2 (25-105)||(8020632-8020712)
chr2 (31-110)||(22965014-22965093)
chr2 (31-110)||(22399514-22399593)
[»] scaffold0257 (1 HSPs)
scaffold0257 (135-241)||(18459-18565)
[»] chr7 (1 HSPs)
chr7 (137-246)||(8692928-8693037)


Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-128; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 16 - 246
Target Start/End: Original strand, 28150937 - 28151167
Alignment:
Q  16 catcagtagcaataataccaacaaattcaaaagtaatttgaaggccatgtgaaaatcacttggatattcctctccaaatatatacatattcaatattagt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28150937 catcagtagcaataataccaacaaattcaaaagtaatttgaaggccatgtgaaaatcacttggatattcctctccaaatatatacatattcaatattagt 28151036  T
Q  116 ctagtaatgaaataattcatatgttcttactacaggagttgatgaatgaacaagaaatggagcaaaaacgtctacgtggagaaattgatgctaccgtcaa 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28151037 ctagtaatgaaataattcatatgttcttactacaggagttgatgaatgaacaagaaatggagcaaaaacgtctacgtggagaaattgatgctaccgtcaa 28151136  T
Q  216 accttctcaagaaaataatgtaatatagtac 246  Q
    |||||||||||||||||||||||||||||||    
T  28151137 accttctcaagaaaataatgtaatatagtac 28151167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 16 - 246
Target Start/End: Original strand, 28003186 - 28003425
Alignment:
Q  16 catcagtagcaataataccaacaaattcaaaagtaatttgaaggccatgtgaaaatcacttggatattcctctccaaatatatac------atattcaat 109  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||      |||||||||    
T  28003186 catcagtagcaataaaaccaacaaattcaaaagtaatttgaaggccatgtgaaaatcacttggataatcctctcccaatatatacgtatacatattcaat 28003285  T
Q  110 attagtctagtaatgaaataattcatatgttcttactacagga---gttgatgaatgaacaagaaatggagcaaaaacgtctacgtggagaaattgatgc 206  Q
    ||||||||||||| ||| ||||| |||||||||||||||||||   |||||||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  28003286 attagtctagtaacgaactaattaatatgttcttactacaggaggagttgatgaatgaacaagaaatggagcaaaaacgtctacttggagaaactgatgc 28003385  T
Q  207 taccgtcaaaccttctcaagaaaataatgtaatatagtac 246  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  28003386 taccgtcaaaccttctcaagaaaataatgtaatatagtac 28003425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 80 - 246
Target Start/End: Original strand, 27979541 - 27979707
Alignment:
Q  80 tattcctctccaaatatatacatattcaatattagtctagtaatgaaataattcatatgttcttactacaggagttgatgaatgaacaagaaatggagca 179  Q
    |||||||||||||||||||||||||||  ||||||||||||||   | ||||||||||||||||| |||||||||||||| |||||||| ||||||||||    
T  27979541 tattcctctccaaatatatacatattcgttattagtctagtaaaagactaattcatatgttcttattacaggagttgatggatgaacaacaaatggagca 27979640  T
Q  180 aaaacgtctacgtggagaaattgatgctaccgtcaaaccttctcaagaaaataatgtaatatagtac 246  Q
    | |||||| || |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||    
T  27979641 acaacgtccacttggagaaactgatgctaccgtcaaaccttctccagaaaataatgtaatatagtac 27979707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 128 - 246
Target Start/End: Original strand, 11420146 - 11420264
Alignment:
Q  128 taattcatatgttcttactacaggagttgatgaatgaacaagaaatggagcaaaaacgtctacgtggagaaattgatgctaccgtcaaaccttctcaaga 227  Q
    |||||||||||||| || |||||||||||||||||||||||  |||||||||| |||||| || ||| |||| ||||||||||||||||||||  || ||    
T  11420146 taattcatatgttcatattacaggagttgatgaatgaacaaccaatggagcaacaacgtccacttggtgaaactgatgctaccgtcaaacctttgcagga 11420245  T
Q  228 aaataatgtaatatagtac 246  Q
    |||||  ||||||||||||    
T  11420246 aaatacagtaatatagtac 11420264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 182 - 246
Target Start/End: Original strand, 27919515 - 27919579
Alignment:
Q  182 aacgtctacgtggagaaattgatgctaccgtcaaaccttctcaagaaaataatgtaatatagtac 246  Q
    |||||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  27919515 aacgtccacttggagaaattgatactaccgtcaaaccttctcaagaaaataatgtaatatagtac 27919579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 137 - 239
Target Start/End: Original strand, 28184908 - 28185010
Alignment:
Q  137 tgttcttactacaggagttgatgaatgaacaagaaatggagcaaaaacgtctacgtggagaaattgatgctaccgtcaaaccttctcaagaaaataatgt 236  Q
    |||||||  |||||||||||||||||||||||  |||||||||  ||||||||| |||||||  |||| ||||||||||||||||||| | |||| ||||    
T  28184908 tgttcttgttacaggagttgatgaatgaacaatcaatggagcagcaacgtctacttggagaacctgatactaccgtcaaaccttctcaggtaaatcatgt 28185007  T
Q  237 aat 239  Q
    |||    
T  28185008 aat 28185010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 192 - 246
Target Start/End: Complemental strand, 17745394 - 17745340
Alignment:
Q  192 tggagaaattgatgctaccgtcaaaccttctcaagaaaataatgtaatatagtac 246  Q
    |||||||| |||||||||||||||||||||||| |||||||||||||||||||||    
T  17745394 tggagaaactgatgctaccgtcaaaccttctcaggaaaataatgtaatatagtac 17745340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 192 - 246
Target Start/End: Complemental strand, 19046714 - 19046660
Alignment:
Q  192 tggagaaattgatgctaccgtcaaaccttctcaagaaaataatgtaatatagtac 246  Q
    |||||||| |||||||||||||||||||||||| |||||||||||||||||||||    
T  19046714 tggagaaactgatgctaccgtcaaaccttctcaggaaaataatgtaatatagtac 19046660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 135 - 246
Target Start/End: Original strand, 28149039 - 28149150
Alignment:
Q  135 tatgttcttactacaggagttgatgaatgaacaagaaatggagcaaaaacgtctacgtggagaaattgatgctaccgtcaaaccttctcaagaaaataat 234  Q
    |||||||||  ||||||||||||||||||||| |  |||||| ||| |||||  || |||||||| |||| || |||||||||||||||| | |||| ||    
T  28149039 tatgttcttgttacaggagttgatgaatgaacgatcaatggaccaacaacgttcacttggagaaactgatactgccgtcaaaccttctcaggtaaatcat 28149138  T
Q  235 gtaatatagtac 246  Q
    ||||||| ||||    
T  28149139 gtaatatcgtac 28149150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 135 - 224
Target Start/End: Original strand, 28134742 - 28134831
Alignment:
Q  135 tatgttcttactacaggagttgatgaatgaacaagaaatggagcaaaaacgtctacgtggagaaattgatgctaccgtcaaaccttctca 224  Q
    |||||||||  |||||||||||||||||||||||  |||||| ||| |||||  || |||||||| |||| || ||||||||||||||||    
T  28134742 tatgttcttgttacaggagttgatgaatgaacaatcaatggaccaacaacgttcacttggagaaactgatacttccgtcaaaccttctca 28134831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 146 - 246
Target Start/End: Complemental strand, 28480707 - 28480607
Alignment:
Q  146 tacaggagttgatgaatgaacaagaaatggagcaaaaacgtctacgtggagaaattgatgctaccgtcaaaccttctcaagaaaataatgtaatatagta 245  Q
    ||||||||||||||||| |||||   ||||||||| ||||||||| |||||||   ||| || |||||||||||||||| | |||| ||||||||| |||    
T  28480707 tacaggagttgatgaatcaacaatctatggagcaacaacgtctacttggagaagccgatactcccgtcaaaccttctcaggtaaatcatgtaatatcgta 28480608  T
Q  246 c 246  Q
    |    
T  28480607 c 28480607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 146 - 246
Target Start/End: Complemental strand, 28509890 - 28509790
Alignment:
Q  146 tacaggagttgatgaatgaacaagaaatggagcaaaaacgtctacgtggagaaattgatgctaccgtcaaaccttctcaagaaaataatgtaatatagta 245  Q
    |||||||||||||||||||||||   ||||||||| ||||||||| |||||||   ||| || |||||||||||||||| | |||| | ||||||| |||    
T  28509890 tacaggagttgatgaatgaacaatcgatggagcaacaacgtctacttggagaagccgattctgccgtcaaaccttctcaggtaaatcaagtaatatcgta 28509791  T
Q  246 c 246  Q
    |    
T  28509790 c 28509790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 110
Target Start/End: Original strand, 11420005 - 11420098
Alignment:
Q  16 catcagtagcaataataccaacaaattcaaaagtaatttgaaggccatgtgaaaatcacttggatattcctctccaaatatatacatattcaata 110  Q
    ||||| ||||||||||||||||||||||| |||||||||  | |||| || |||||| |||| |||||||| || |||||| || ||||||||||    
T  11420005 catcaatagcaataataccaacaaattcagaagtaattttcaagccacgtcaaaatctcttgcatattcct-tctaaatatctatatattcaata 11420098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 192 - 246
Target Start/End: Complemental strand, 26114127 - 26114073
Alignment:
Q  192 tggagaaattgatgctaccgtcaaaccttctcaagaaaataatgtaatatagtac 246  Q
    |||||||| |||| ||||| ||||||||||||||||| |||||||||||||||||    
T  26114127 tggagaaactgatactaccatcaaaccttctcaagaagataatgtaatatagtac 26114073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 192 - 246
Target Start/End: Original strand, 28036614 - 28036668
Alignment:
Q  192 tggagaaattgatgctaccgtcaaaccttctcaagaaaataatgtaatatagtac 246  Q
    |||||||| |||||||||||||||| |||||| ||||||||| ||||||||||||    
T  28036614 tggagaaactgatgctaccgtcaaagcttctccagaaaataacgtaatatagtac 28036668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 147 - 241
Target Start/End: Original strand, 28082856 - 28082950
Alignment:
Q  147 acaggagttgatgaatgaacaagaaatggagcaaaaacgtctacgtggagaaattgatgctaccgtcaaaccttctcaagaaaataatgtaatat 241  Q
    ||||||||||||||||||||||  |||||| ||| ||||||||  |||||||| |||| || |||||||||||| ||| | |||| ||| |||||    
T  28082856 acaggagttgatgaatgaacaaacaatggaccaacaacgtctagttggagaaactgatactgccgtcaaaccttttcaggtaaatcatgcaatat 28082950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 195 - 242
Target Start/End: Complemental strand, 27459794 - 27459747
Alignment:
Q  195 agaaattgatgctaccgtcaaaccttctcaagaaaataatgtaatata 242  Q
    ||||| |||||||| ||||||||||||||| |||||||||||||||||    
T  27459794 agaaactgatgctagcgtcaaaccttctcaggaaaataatgtaatata 27459747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 27919376 - 27919414
Alignment:
Q  16 catcagtagcaataataccaacaaattcaaaagtaattt 54  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  27919376 catcagtagcaataataccaacaaattcagaagtaattt 27919414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 97
Target Start/End: Complemental strand, 27459987 - 27459906
Alignment:
Q  16 catcagtagcaataataccaacaaattcaaaagtaatttgaaggccatgtgaaaatcacttggatattcctctccaaatata 97  Q
    |||||||||||| |||||||||| | ||| ||||||| || |||||||||  || || |||| |||||| ||||||||||||    
T  27459987 catcagtagcaacaataccaacagactcagaagtaatgtgcaggccatgtcgaagtcccttgcatattcatctccaaatata 27459906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 26202577 - 26202529
Alignment:
Q  192 tggagaaattgatgctaccgtcaaaccttctcaagaaaataatgtaata 240  Q
    |||||||| |||| ||||| ||||||||||||||||| |||||||||||    
T  26202577 tggagaaactgatactaccatcaaaccttctcaagaatataatgtaata 26202529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 110
Target Start/End: Complemental strand, 17745528 - 17745497
Alignment:
Q  79 atattcctctccaaatatatacatattcaata 110  Q
    ||||||||||||||||||||||||||||||||    
T  17745528 atattcctctccaaatatatacatattcaata 17745497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 110
Target Start/End: Complemental strand, 19046848 - 19046817
Alignment:
Q  79 atattcctctccaaatatatacatattcaata 110  Q
    ||||||||||||||||||||||||||||||||    
T  19046848 atattcctctccaaatatatacatattcaata 19046817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 246
Target Start/End: Complemental strand, 26128879 - 26128829
Alignment:
Q  196 gaaattgatgctaccgtcaaaccttctcaagaaaataatgtaatatagtac 246  Q
    |||| |||| ||||| ||||||||||||| ||| |||||||||||||||||    
T  26128879 gaaactgatactaccatcaaaccttctcaggaagataatgtaatatagtac 26128829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 95
Target Start/End: Complemental strand, 26236502 - 26236438
Alignment:
Q  31 taccaacaaattcaaaagtaatttgaaggccatgtgaaaatcacttggatattcctctccaaata 95  Q
    |||||||||||| | |||||||||| || |||||| ||| || | |||| |||||||||||||||    
T  26236502 taccaacaaattaagaagtaatttgtagaccatgtaaaattcccatggaaattcctctccaaata 26236438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 168
Target Start/End: Complemental strand, 27459846 - 27459806
Alignment:
Q  128 taattcatatgttcttactacaggagttgatgaatgaacaa 168  Q
    |||||| |||||||||| |||||||||| ||||||||||||    
T  27459846 taattcgtatgttcttattacaggagttaatgaatgaacaa 27459806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 164
Target Start/End: Original strand, 27919476 - 27919512
Alignment:
Q  128 taattcatatgttcttactacaggagttgatgaatga 164  Q
    ||||||||||||||||| ||||||||||||| |||||    
T  27919476 taattcatatgttcttattacaggagttgataaatga 27919512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 217
Target Start/End: Original strand, 28160356 - 28160436
Alignment:
Q  137 tgttcttactacaggagttgatgaatgaacaagaaatggagcaaaaacgtctacgtggagaaattgatgctaccgtcaaac 217  Q
    |||||||  |||||||||||||||||||||||   ||||| ||  ||||||||| |||||||  |||| ||||| ||||||    
T  28160356 tgttcttgttacaggagttgatgaatgaacaatcgatggaacagcaacgtctacttggagaacctgatactaccatcaaac 28160436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 7e-36; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 25 - 105
Target Start/End: Original strand, 8020632 - 8020712
Alignment:
Q  25 caataataccaacaaattcaaaagtaatttgaaggccatgtgaaaatcacttggatattcctctccaaatatatacatatt 105  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8020632 caatattaccaacaaattcaaaagtaatttgaaggccatgtgaaaatcacttggatattcctctccaaatatatacatatt 8020712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 31 - 110
Target Start/End: Original strand, 22965014 - 22965093
Alignment:
Q  31 taccaacaaattcaaaagtaatttgaaggccatgtgaaaatcacttggatattcctctccaaatatatacatattcaata 110  Q
    |||||||||||||| ||||||| |||||||| ||| ||| |||||| ||||||||||||||||||||||| |||||||||    
T  22965014 taccaacaaattcagaagtaatatgaaggccgtgtcaaattcacttcgatattcctctccaaatatatacttattcaata 22965093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 31 - 110
Target Start/End: Original strand, 22399514 - 22399593
Alignment:
Q  31 taccaacaaattcaaaagtaatttgaaggccatgtgaaaatcacttggatattcctctccaaatatatacatattcaata 110  Q
    |||||||||||||| ||||||| |||||||| ||| ||| ||||||  |||||||||||||||||||||| |||||||||    
T  22399514 taccaacaaattcagaagtaatatgaaggccgtgtcaaattcacttctatattcctctccaaatatatacttattcaata 22399593  T

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Target: scaffold0257 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 135 - 241
Target Start/End: Original strand, 18459 - 18565
Alignment:
Q  135 tatgttcttactacaggagttgatgaatgaacaagaaatggagcaaaaacgtctacgtggagaaattgatgctaccgtcaaaccttctcaagaaaataat 234  Q
    |||||||||  |||||||||||||||||||| ||   ||| ||||| |||||| || |||||||| ||||  | |||||||||||||||| | |||| ||    
T  18459 tatgttcttgttacaggagttgatgaatgaaaaatcgatgcagcaacaacgtccacttggagaaactgatattgccgtcaaaccttctcaggtaaatcat 18558  T
Q  235 gtaatat 241  Q
    |||||||    
T  18559 gtaatat 18565  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 246
Target Start/End: Complemental strand, 8693037 - 8692928
Alignment:
Q  137 tgttcttactacaggagttgatgaatgaacaagaaatggagcaaaaacgtctacgtggagaaattgatgctaccgtcaaaccttctcaagaaaataatgt 236  Q
    |||||||  ||||||| |||||||||||||||   |||||  || |||||| || |||||||| ||||  | ||| |||||||||||| | |||| ||||    
T  8693037 tgttcttgttacaggaattgatgaatgaacaatcgatggacaaacaacgtccacttggagaaactgatattgccggcaaaccttctcaggtaaatcatgt 8692938  T
Q  237 aatatagtac 246  Q
    ||||| ||||    
T  8692937 aatatcgtac 8692928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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