View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8430_low_2 (Length: 379)
Name: NF8430_low_2
Description: NF8430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8430_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 9 - 367
Target Start/End: Complemental strand, 40684964 - 40684606
Alignment:
| Q |
9 |
cttctatagtcttcatgtccactgagttccctgatgcatccctcacatagaagacattaagagcttgttcccctctggttgatataccggctctacaaac |
108 |
Q |
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| T |
40684964 |
cttctatagtcttcatgtccactgagttccctgatgcatccctcacatagaagacattaagagcttgttcccctctggttgatataccggctctacaaac |
40684865 |
T |
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| Q |
109 |
tgttaggccgttctctctcagaattcttgttacttcagagagcaatcccactctatcctttgcacacaactctaggctcacaccctgtgtccaaaatccg |
208 |
Q |
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| T |
40684864 |
tgttaggccgttctctctcagaattcttgttacttcagagagcaatcccactctatcctttgcacacaactctaggctcacaccctgtgtccaaaatccg |
40684765 |
T |
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| Q |
209 |
tagaatttaatactaagactaagacattcttcgtttcttgaagaagaagaaaaacaagttctttcacaaagcgtggaagagttgctagctgaaatcaatt |
308 |
Q |
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| T |
40684764 |
tagaatttaatactaagactaagacattcttcgtttcttgaagaagaagaaaaacaagttctttcacaaagcgtggaagagttgctagctgaaatcaatt |
40684665 |
T |
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| Q |
309 |
taaatctgtaagttacctcgcttactcttctttgaatagcagcttcaatgcatttgatg |
367 |
Q |
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| T |
40684664 |
taaatctgtaagttacctcgcttactcttctttgaatggcagcttcaatgcatttgatg |
40684606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 20 - 201
Target Start/End: Original strand, 10142090 - 10142271
Alignment:
| Q |
20 |
ttcatgtccactgagttccctgatgcatccctcacatagaagacattaagagcttgttcccctctggttgatataccggctctacaaactgttaggccgt |
119 |
Q |
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| T |
10142090 |
ttcatatccacagggttcccatatgcatctctcacatagaaaacatttagtcctttctctcctatggttgacacacctgccctacaaactgttaagccgt |
10142189 |
T |
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| Q |
120 |
tctctctcagaattcttgttacttcagagagcaatcccactctatcctttgcacacaactctaggctcacaccctgtgtcca |
201 |
Q |
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| T |
10142190 |
tctctcgtagaatcctagtcacttcagacagcaagcccactctatcctttgcacacagctcaaggctcacaccctgtgtcca |
10142271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 321 - 363
Target Start/End: Original strand, 10143130 - 10143172
Alignment:
| Q |
321 |
ttacctcgcttactcttctttgaatagcagcttcaatgcattt |
363 |
Q |
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| T |
10143130 |
ttacctcgcttactcttctttgaatagctgcttcaatgcattt |
10143172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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