View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8430_low_3 (Length: 248)
Name: NF8430_low_3
Description: NF8430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8430_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 34662116 - 34662348
Alignment:
| Q |
1 |
ataagagaaaaatatagaaaaggagcaaatagaagagagcacaaaggaaggatcatccggcttcaaaaacttccttcacagatatgtggaagataccatc |
100 |
Q |
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| T |
34662116 |
ataagagaaaaatatagaaaaggagcaaatagaagagagcacaaaggaaggatcatccggcttcaaaaacttccttcacagatatatggaagataccatc |
34662215 |
T |
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| Q |
101 |
tctcgtgatatggatattcaatcatatgctaaatcaactaagcaaaacattgtcgattatggaattctactaattgtttgtcaaactagtatttatgaag |
200 |
Q |
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| T |
34662216 |
tctcgtgatatggatattcaatcatatgctaaatcaactaagcaaaacattgtcgattatggaattctactaattgtttgtcaaactagtatttatgaag |
34662315 |
T |
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| Q |
201 |
aagcttatggagcttttagatatgccatacatg |
233 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
34662316 |
aagcttatggagcttttagatatgccatacatg |
34662348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 127 - 233
Target Start/End: Original strand, 26956141 - 26956247
Alignment:
| Q |
127 |
tgctaaatcaactaagcaaaacattgtcgattatggaattctactaattgtttgtcaaactagtatttatgaagaagcttatggagcttttagatatgcc |
226 |
Q |
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| T |
26956141 |
tgctacatcaattaaggaaaacattgtcgatagtggaattctactaattggttgtcaaactagaatttctgaagaagcttatggagtttttagatatgcc |
26956240 |
T |
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| Q |
227 |
atacatg |
233 |
Q |
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| T |
26956241 |
atacatg |
26956247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 4 - 120
Target Start/End: Original strand, 26881794 - 26881911
Alignment:
| Q |
4 |
agagaaaaatatagaaaaggagcaaatagaagagagcacaaaggaaggatcatcc---ggcttcaaaaacttccttcacagatatgtggaagataccatc |
100 |
Q |
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|||||||||||||||||| |||| |||| |||||||||||||||||||||||||| ||||||||||| | ||||||| ||||||||||||||| | |
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| T |
26881794 |
agagaaaaatatagaaaatgagctaatataagagagcacaaaggaaggatcatcctcatgcttcaaaaacatgcttcacatatatgtggaagatac--ac |
26881891 |
T |
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| Q |
101 |
tctcgtgatatggatattca |
120 |
Q |
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|||||||||||||||||||| |
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| T |
26881892 |
tctcgtgatatggatattca |
26881911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 62 - 125
Target Start/End: Original strand, 26955529 - 26955592
Alignment:
| Q |
62 |
ttcaaaaacttccttcacagatatgtggaagataccatctctcgtgatatggatattcaatcat |
125 |
Q |
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|||||||||||||||||||| ||||| |||||||| ||| ||||| ||||||||||||||||| |
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| T |
26955529 |
ttcaaaaacttccttcacagcaatgtgaaagataccgtctttcgtggtatggatattcaatcat |
26955592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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