View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8430_low_4 (Length: 244)
Name: NF8430_low_4
Description: NF8430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8430_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 28524479 - 28524681
Alignment:
| Q |
1 |
tggtgaggcatggacacatgtgattgcattctatcaattcattttttcaaattattactgatgtcggtgttagtattgtgtttggtgtcaatgcttatag |
100 |
Q |
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| T |
28524479 |
tggtgaggcatggacacatgtgattacattctatcatttcattttttcaaattattactgatgtcggtgttagtattgtgtttggtgtcaatgcttatag |
28524578 |
T |
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| Q |
101 |
ataatgtgtgcacgttgtaactgtgtacccttcggtgtacctctataaccaaatcgttcttatattataaatttataatctggctgttatttgaaagagt |
200 |
Q |
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| T |
28524579 |
ataatgtgtgcaagttgtaactgtgtacccttcggtgtacctctataaccaaatcgctcttatattataaatttataatctggctgttatttgaaagagt |
28524678 |
T |
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| Q |
201 |
tcc |
203 |
Q |
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||| |
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| T |
28524679 |
tcc |
28524681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 65
Target Start/End: Original strand, 12440469 - 12440501
Alignment:
| Q |
33 |
atcaattcattttttcaaattattactgatgtc |
65 |
Q |
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| T |
12440469 |
atcaattcattttttcaaattattagtgatgtc |
12440501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 36768856 - 36768908
Alignment:
| Q |
13 |
gacacatgtgattgcattctatcaattcattttttcaaattattactgatgtc |
65 |
Q |
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| T |
36768856 |
gacacatgtgattacattcaattaattaattctctcaaattattactgatgtc |
36768908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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