View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8430_low_8 (Length: 230)
Name: NF8430_low_8
Description: NF8430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8430_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 17 - 215
Target Start/End: Complemental strand, 12217228 - 12217030
Alignment:
| Q |
17 |
tgaaagcaatgttggggtttccgtcaaggtaaccgtttctgtcttcgttgttgaatttggtttacggtttgtctgtttacaattagagccactaacaacg |
116 |
Q |
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| T |
12217228 |
tgaaagcaatgttagggtttccgtcaaggtaaccgtttctgtcttcgttgttgaatttggtttacggtttgtctgtttacaattagagccactaacaacg |
12217129 |
T |
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| Q |
117 |
ttgttcgaagaaaaacataaacccatgatgatgttgaagatggagaaaaatctgtaaggaagcaaatatttttagctaagttttcaaacaaatggaaaa |
215 |
Q |
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| T |
12217128 |
ttgttcgaagaaaaacataaacccatgatgatgttgaagatggagaaaaatctgtaaggaagcaaatatttttagctaagttttcaaacaaatggaaaa |
12217030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 17 - 215
Target Start/End: Original strand, 7428452 - 7428655
Alignment:
| Q |
17 |
tgaaagcaatgttggggtttccgtcaaggtaaccgtttctgtcttcgttgttgaatttggtttacggtttgtctgtttacaattagagccactaacaacg |
116 |
Q |
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||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
7428452 |
tgaaagcaatgttagggtttccgtcaacgtaactgtttctgtcttcgttgttgaatttggtttacggtttgtctgtttacaattagagccgctaacaacc |
7428551 |
T |
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| Q |
117 |
ttgttcgaagaaaaacataaacccatgatg-----atgttgaagatggagaaaaatctgtaaggaagcaaatatttttagctaagttttcaaacaaatgg |
211 |
Q |
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|| |||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||| |
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| T |
7428552 |
ctggtcgaagaaaaacataaacccatgatgatgttatgttgaagatggagaaaaacctgaaaggaagcaaatatttttagagaagttttcaaacaaatga |
7428651 |
T |
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| Q |
212 |
aaaa |
215 |
Q |
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|||| |
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| T |
7428652 |
aaaa |
7428655 |
T |
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