View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8431_high_16 (Length: 216)
Name: NF8431_high_16
Description: NF8431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8431_high_16 |
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Alignment Details
Target: chr8 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 15 - 198
Target Start/End: Complemental strand, 34174818 - 34174632
Alignment:
| Q |
15 |
atgaaccatgtggttgtagatgccaagtcgttttggcatttcgtcaattcttgggttgaaatctcacatggtttcaataaaccaacaaaaatcccttctt |
114 |
Q |
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| T |
34174818 |
atgaaccatgtggttgtagatgccaagtcgttttggcatttcgtcaattctggggtggaaatctcacatggtttcaataaaccaacaaaaatcccttctt |
34174719 |
T |
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| Q |
115 |
tcgaacgcttctttccaaacaacattaac---catcccatacggtttcctttcacaaaggaaacacaaagtcaacaatttgaagtat |
198 |
Q |
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| T |
34174718 |
tcgaacgtttctttccaaacaacattaaccatcatcccatacggtttcctttcacaaaggaaacacaaagtcaacaatttgaagtat |
34174632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 87; Significance: 7e-42; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 18 - 180
Target Start/End: Complemental strand, 39075936 - 39075774
Alignment:
| Q |
18 |
aaccatgtggttgtagatgccaagtcgttttggcatttcgtcaattcttgggttgaaatctcacatggtttcaataaaccaacaaaaatcccttctttcg |
117 |
Q |
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| T |
39075936 |
aaccatgtgggtgtagacgccaagtcattttggcatttcatcaactcttgggctgaaatctcacaaggttttaataagccaacaaatatcccttctttca |
39075837 |
T |
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| Q |
118 |
aacgcttctttccaaacaacattaaccatcccatacggtttcctttcacaaaggaaacacaaa |
180 |
Q |
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| T |
39075836 |
aacgttggtttacaaacaacattaaccgtcccattaggtttcctttcacaaaggaagcacaaa |
39075774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 18 - 189
Target Start/End: Complemental strand, 7399167 - 7398996
Alignment:
| Q |
18 |
aaccatgtggttgtagatgccaagtcgttttggcatttcgtcaattcttgggttgaaatctcacatggtttcaataaaccaacaaaaatcccttctttcg |
117 |
Q |
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| T |
7399167 |
aaccatgtgtgtgtagacgcgaagtcattttggcatttcatcaactcttgggctgaaatcgcacaaggtttcaataagccaacaaaagttccttctttcg |
7399068 |
T |
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| Q |
118 |
aacgcttctttccaaacaacattaaccatcccatacggtttcctttcacaaaggaaacacaaagtcaacaat |
189 |
Q |
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| T |
7399067 |
aacgttggtttccaaataatgttaaccgtcccatacggtttcctttcacaaaagatgcacaaaatcaacaat |
7398996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 39083033 - 39082971
Alignment:
| Q |
18 |
aaccatgtggttgtagatgccaagtcgttttggcatttcgtcaattcttgggttgaaatctca |
80 |
Q |
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| T |
39083033 |
aaccatgttgttttagacggcaagtcattttggcatttcgtcaattcttggtctgaaatctca |
39082971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 27 - 68
Target Start/End: Complemental strand, 39071568 - 39071527
Alignment:
| Q |
27 |
gttgtagatgccaagtcgttttggcatttcgtcaattcttgg |
68 |
Q |
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| T |
39071568 |
gttgcagacgccaagtcattttggcatttcgtcaattcttgg |
39071527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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