View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8431_high_2 (Length: 463)

Name: NF8431_high_2
Description: NF8431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8431_high_2
NF8431_high_2
[»] chr1 (1 HSPs)
chr1 (13-454)||(49655925-49656360)


Alignment Details
Target: chr1 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 13 - 454
Target Start/End: Complemental strand, 49656360 - 49655925
Alignment:
Q  13 aaaaacaacattgatatttgtacaattttgacatcatat---------cgtatgaaatacactttagcctgagggtgttcgcattcgcaagagagggtga 103  Q
    ||||||||| |||||| ||||||||||||||||||||||         |||||||||||||| ||||||||||||||||| ||||| |||| ||||||||    
T  49656360 aaaaacaacgttgatacttgtacaattttgacatcatatgttcgatatcgtatgaaatacaccttagcctgagggtgttcacattcacaagggagggtga 49656261  T
Q  104 gggagttaatatataatcagaaaccatgtagaatgtgtttggaatacggtgtctgacgtgaaattctaacttctacaaaacatatctattggaaaagttt 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  49656260 gggagttaatatataatcagaaaccatgtagaatgtgtttggaatacggtgtctgacgtgaaattctaatttctacaaaacatatctattggaaaagttt 49656161  T
Q  204 gattagccacttacttgtctcaatatgatttcattaacaagaacctataaagcacttgaataattggtaacgtcttgaatagttttagacttataatttt 303  Q
    ||||||||||||||||||||||||||||||||||||||           |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  49656160 gattagccacttacttgtctcaatatgatttcattaac-----------aagcacttgaataattggtaacgttttgaatagttttagacttataatttt 49656072  T
Q  304 ttaatagacaaacgttagtgattaatttgttaatgttagagtcatatatggaccttttttgtaatactctttcaacatctcaacc------tatataaat 397  Q
    ||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||      |||||||||    
T  49656071 ttaatagacaaacgttagtgattaatttgttaatgt----------tatggaccttttttgtaatactctttcaacatctcaacctatatatatataaat 49655982  T
Q  398 gaactatgcgcttggggacggttttaaatttgtaattgaaatagttaggagtattat 454  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  49655981 gaactatgcgctcggggacggttttaaatttgtaattgaaatagttaggagtattat 49655925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University