View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8431_high_3 (Length: 447)

Name: NF8431_high_3
Description: NF8431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8431_high_3
NF8431_high_3
[»] chr4 (15 HSPs)
chr4 (17-431)||(1600567-1600981)
chr4 (107-188)||(55908337-55908418)
chr4 (328-429)||(55908576-55908677)
chr4 (31-189)||(3438186-3438343)
chr4 (337-430)||(12121314-12121407)
chr4 (351-429)||(8186962-8187040)
chr4 (388-429)||(1495830-1495871)
chr4 (388-429)||(1533898-1533939)
chr4 (390-430)||(1537677-1537717)
chr4 (330-428)||(532334-532432)
chr4 (386-432)||(1505017-1505063)
chr4 (351-421)||(1548297-1548367)
chr4 (107-188)||(1527812-1527893)
chr4 (400-429)||(53761692-53761721)
chr4 (135-187)||(641321-641373)
[»] chr6 (12 HSPs)
chr6 (118-188)||(7993805-7993875)
chr6 (351-431)||(7119305-7119382)
chr6 (351-431)||(7131783-7131860)
chr6 (112-218)||(6588949-6589055)
chr6 (335-428)||(9411503-9411596)
chr6 (116-182)||(6596567-6596633)
chr6 (29-149)||(8913599-8913723)
chr6 (399-429)||(6403010-6403040)
chr6 (399-429)||(6432311-6432341)
chr6 (399-429)||(6594525-6594555)
chr6 (334-375)||(6410207-6410248)
chr6 (116-188)||(6432557-6432629)
[»] chr8 (7 HSPs)
chr8 (332-421)||(32151456-32151545)
chr8 (340-419)||(18315133-18315212)
chr8 (348-429)||(34936031-34936112)
chr8 (107-217)||(17627668-17627778)
chr8 (11-68)||(17627572-17627629)
chr8 (332-373)||(17627911-17627952)
chr8 (351-431)||(17636268-17636348)
[»] chr2 (3 HSPs)
chr2 (107-188)||(1037273-1037354)
chr2 (328-429)||(1037512-1037613)
chr2 (333-421)||(32785628-32785716)
[»] scaffold0262 (1 HSPs)
scaffold0262 (107-188)||(326-407)
[»] scaffold0295 (1 HSPs)
scaffold0295 (350-429)||(494-573)
[»] chr3 (2 HSPs)
chr3 (328-429)||(13470583-13470681)
chr3 (328-373)||(51764291-51764336)
[»] chr7 (4 HSPs)
chr7 (330-429)||(10614743-10614839)
chr7 (393-429)||(7977728-7977764)
chr7 (328-431)||(10169981-10170081)
chr7 (328-431)||(10177506-10177606)
[»] chr1 (5 HSPs)
chr1 (328-429)||(9581218-9581319)
chr1 (328-431)||(19468350-19468450)
chr1 (28-156)||(19468038-19468166)
chr1 (328-419)||(9586796-9586887)
chr1 (79-187)||(33160914-33161022)
[»] chr5 (3 HSPs)
chr5 (332-423)||(41901390-41901481)
chr5 (328-429)||(41889402-41889503)
chr5 (107-218)||(28532084-28532195)
[»] scaffold0014 (1 HSPs)
scaffold0014 (159-218)||(89137-89196)


Alignment Details
Target: chr4 (Bit Score: 399; Significance: 0; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 17 - 431
Target Start/End: Complemental strand, 1600981 - 1600567
Alignment:
Q  17 tggagtagttagtttgttatccaagtgtcaacgtatccaacatttggttcttaaaagagccgattttttgaaagatcgccatgttgccctgttgacttcg 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  1600981 tggagtagttagtttgttatccaagtgtcaacgtatccaacatttggttcttaaaagagccgattttttgaaagatcgccatgttgccttgttgacttcg 1600882  T
Q  117 tttcttggtgatttggtttctataaaccttagtgaatgtagtatgctcacagaatcagccttgtttgcactcaatgagaagtgtcctttacttaatgaga 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1600881 tttcttggtgatttggtttctataaaccttagtgaatgtagtatgctcacagaatcagccttgtttgcactcaatgagaagtgtcctttacttaatgaga 1600782  T
Q  217 tcgtaatggcatgcgcaaatattgcatatgaaagagtagggaattgtgttgtaaaccctcaaatcaagtgtctacgtttggctaacaattatgtgttaca 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1600781 tcgtaatggcatgcgcaaatattgcatatgaaagagtagggaattgtgttgtaaaccctcaaatcaagtgtctacgtttggctaacaattatgtgttaca 1600682  T
Q  317 agatacaaaggtcataatgtttgcttccaattttcccaattttcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagtt 416  Q
    |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1600681 agatacaaagatcataatgtttgcttccaattttcccaatttgcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagtt 1600582  T
Q  417 ttaaggagatgttct 431  Q
    |||||||||| ||||    
T  1600581 ttaaggagattttct 1600567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 107 - 188
Target Start/End: Original strand, 55908337 - 55908418
Alignment:
Q  107 gttgacttcgtttcttggtgatttggtttctataaaccttagtgaatgtagtatgctcacagaatcagccttgtttgcactc 188  Q
    |||| ||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||| || ||| |||||||||||    
T  55908337 gttgtctttgtttcttggtgatttggtgtctataaaccttagtgaatgtagcatgctcacagactcggccatgtttgcactc 55908418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 328 - 429
Target Start/End: Original strand, 55908576 - 55908677
Alignment:
Q  328 tcataatgtttgcttccaattttcccaattttcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagatg 427  Q
    ||||| |||||||||||| ||| |||||||| ||| | ||||||||||||   |||  ||||||||||||||||||||||||| ||||| ||||||||||    
T  55908576 tcatattgtttgcttccattttccccaatttgcaatttcttgatttgagctcctgccataacatatctgaagaaggtatttgtgaagttctaaggagatg 55908675  T
Q  428 tt 429  Q
    ||    
T  55908676 tt 55908677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 31 - 189
Target Start/End: Original strand, 3438186 - 3438343
Alignment:
Q  31 tgttatccaagtgtcaacgtatccaacatttggttcttaaaagagccgattttttgaaagatcgccatgttgccctgttgacttcgtttcttggtgattt 130  Q
    ||||||||||||||||| |||| |||||||||| |||| ||| | |  | ||| | || ||||||||||||| |  |||| |   ||||| |||||||||    
T  3438186 tgttatccaagtgtcaatgtatacaacatttggatcttcaaaaa-cttactttctaaatgatcgccatgttgtcaagttgtccatgtttcatggtgattt 3438284  T
Q  131 ggtttctataaaccttagtgaatgtagtatgctcacagaatcagccttgtttgcactca 189  Q
    ||| ||||||||||||||||| |||   ||||||||| ||| |||||| ||| ||||||    
T  3438285 ggtgtctataaaccttagtgattgttcgatgctcacaaaattagccttattttcactca 3438343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 337 - 430
Target Start/End: Original strand, 12121314 - 12121407
Alignment:
Q  337 ttgcttccaattttcccaattttcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagatgttc 430  Q
    ||||||||  ||| |||||||| ||| |||||||||||||   ||||  |||||||||||||||||||||||  ||||| ||||||| ||||||    
T  12121314 ttgcttccgttttccccaatttgcaattgcttgatttgagtttttgctataacatatctgaagaaggtattttccaagtcttaaggacatgttc 12121407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 351 - 429
Target Start/End: Original strand, 8186962 - 8187040
Alignment:
Q  351 cccaattttcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagatgtt 429  Q
    |||||||| ||  |||||||||||||   ||||  | ||||||||||||||||||||||||||||||| | ||||||||    
T  8186962 cccaatttgcagttgcttgatttgagtcattgctatgacatatctgaagaaggtatttgtcaagttttgaagagatgtt 8187040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 388 - 429
Target Start/End: Original strand, 1495830 - 1495871
Alignment:
Q  388 acatatctgaagaaggtatttgtcaagttttaaggagatgtt 429  Q
    |||||||||||||||||||| |||| ||||||||||||||||    
T  1495830 acatatctgaagaaggtattggtcatgttttaaggagatgtt 1495871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 388 - 429
Target Start/End: Original strand, 1533898 - 1533939
Alignment:
Q  388 acatatctgaagaaggtatttgtcaagttttaaggagatgtt 429  Q
    |||||||||||||||||||| |||| ||||||||||||||||    
T  1533898 acatatctgaagaaggtattagtcatgttttaaggagatgtt 1533939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 430
Target Start/End: Original strand, 1537677 - 1537717
Alignment:
Q  390 atatctgaagaaggtatttgtcaagttttaaggagatgttc 430  Q
    ||||||||||||||||||| |||||||||||||| ||||||    
T  1537677 atatctgaagaaggtatttttcaagttttaaggacatgttc 1537717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 330 - 428
Target Start/End: Complemental strand, 532432 - 532334
Alignment:
Q  330 ataatgtttgcttccaattttcccaattttcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagatgt 428  Q
    ||||||||||| |||| ||| |||||||| ||  |||| || ||||||  |||   |||||||||| |||||||||||| ||||||||| | |||||||    
T  532432 ataatgtttgcatccattttccccaatttacatatgctggacttgagctattgttataacatatctaaagaaggtatttatcaagttttgaagagatgt 532334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 386 - 432
Target Start/End: Original strand, 1505017 - 1505063
Alignment:
Q  386 taacatatctgaagaaggtatttgtcaagttttaaggagatgttctt 432  Q
    |||||||||||||||||||||||  || |||||||||| ||||||||    
T  1505017 taacatatctgaagaaggtattttccatgttttaaggacatgttctt 1505063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 351 - 421
Target Start/End: Original strand, 1548297 - 1548367
Alignment:
Q  351 cccaattttcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaag 421  Q
    |||||||| ||||||||||||||||  | ||||| |  |||||| || |||||||||||| ||||||||||    
T  1548297 cccaatttgcaactgcttgatttgattaattgcagtggcatatcagacgaaggtatttgtgaagttttaag 1548367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 188
Target Start/End: Original strand, 1527812 - 1527893
Alignment:
Q  107 gttgacttcgtttcttggtgatttggtttctataaaccttagtgaatgtagtatgctcacagaatcagccttgtttgcactc 188  Q
    |||| ||||||||||| |||||||| | ||||||||| ||||| |||||  ||  |||||| | | ||||||||||||||||    
T  1527812 gttgtcttcgtttcttagtgatttgttgtctataaacattagtaaatgtgatagcctcacacatttagccttgtttgcactc 1527893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 429
Target Start/End: Original strand, 53761692 - 53761721
Alignment:
Q  400 aaggtatttgtcaagttttaaggagatgtt 429  Q
    ||||||||||||||||||||||||||||||    
T  53761692 aaggtatttgtcaagttttaaggagatgtt 53761721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 135 - 187
Target Start/End: Complemental strand, 641373 - 641321
Alignment:
Q  135 tctataaaccttagtgaatgtagtatgctcacagaatcagccttgtttgcact 187  Q
    ||||||||||||||| | ||| ||| ||||||| ||||| |||||||||||||    
T  641373 tctataaaccttagtcattgtggtaagctcacaaaatcaaccttgtttgcact 641321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 118 - 188
Target Start/End: Original strand, 7993805 - 7993875
Alignment:
Q  118 ttcttggtgatttggtttctataaaccttagtgaatgtagtatgctcacagaatcagccttgtttgcactc 188  Q
    |||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||| |||||    
T  7993805 ttcttggtgatttggtgtctataaaccttagtgaatgtcggatgctcacagaatcagccttgttttcactc 7993875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 351 - 431
Target Start/End: Complemental strand, 7119382 - 7119305
Alignment:
Q  351 cccaattttcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagatgttct 431  Q
    |||||||| ||||| ||||||||||  | ||||| ||||||||||||||   |||||||||||||||||||||||||||||    
T  7119382 cccaatttacaacttcttgatttgaatacttgcaataacatatctgaag---gtatttgtcaagttttaaggagatgttct 7119305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 351 - 431
Target Start/End: Complemental strand, 7131860 - 7131783
Alignment:
Q  351 cccaattttcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagatgttct 431  Q
    |||||||| ||||| ||||||||||  | ||||| ||||||||||||||   |||||||||||||||||||||||||||||    
T  7131860 cccaatttacaacttcttgatttgaatacttgcaataacatatctgaag---gtatttgtcaagttttaaggagatgttct 7131783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 112 - 218
Target Start/End: Original strand, 6588949 - 6589055
Alignment:
Q  112 cttcgtttcttggtgatttggtttctataaaccttagtgaatgtagtatgctcacagaatcagccttgtttgcactcaatgagaagtgtcctttacttaa 211  Q
    |||| ||||||||||||||||| ||  ||||||||||| | || |||| | ||||||||||||| |||||||||||   |  ||||||||||||||||      
T  6588949 cttcctttcttggtgatttggtgtccgtaaaccttagtaattgcagtaagatcacagaatcagctttgtttgcacttgctaggaagtgtcctttacttgg 6589048  T
Q  212 tgagatc 218  Q
    |||||||    
T  6589049 tgagatc 6589055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 335 - 428
Target Start/End: Complemental strand, 9411596 - 9411503
Alignment:
Q  335 gtttgcttccaattttcccaattttcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagatgt 428  Q
    ||||||||||| ||| |||||||| || ||||||||||||||| | ||   |||||||||| | ||||||||||  || |||||||||||||||    
T  9411596 gtttgcttccattttccccaatttgcagctgcttgatttgagcggatgttgtaacatatctaacgaaggtattttgcaggttttaaggagatgt 9411503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 116 - 182
Target Start/End: Original strand, 6596567 - 6596633
Alignment:
Q  116 gtttcttggtgatttggtttctataaaccttagtgaatgtagtatgctcacagaatcagccttgttt 182  Q
    |||||||||||||||||||||||||||||||| | | |||   | |||||||||||||||| |||||    
T  6596567 gtttcttggtgatttggtttctataaaccttaatcattgttcaaggctcacagaatcagccgtgttt 6596633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 149
Target Start/End: Original strand, 8913599 - 8913723
Alignment:
Q  29 tttgttatccaagtgtcaacgtatccaacatttggttcttaaaagagccgattt----tttgaaagatcgccatgttgccctgttgacttcgtttcttgg 124  Q
    ||||||||||||||||||| || | ||||||||||||||||| ||  |  ||||    | |||| ||||  ||||||| |  |||| ||| |||||||||    
T  8913599 tttgttatccaagtgtcaatgtttacaacatttggttcttaatagcacttattttatatatgaatgatcaacatgttgtcaagttgtctttgtttcttgg 8913698  T
Q  125 tgatttggtttctataaaccttagt 149  Q
    | ||||||| |||||||||||||||    
T  8913699 taatttggtgtctataaaccttagt 8913723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 399 - 429
Target Start/End: Complemental strand, 6403040 - 6403010
Alignment:
Q  399 gaaggtatttgtcaagttttaaggagatgtt 429  Q
    |||||||||||||||||||||||||||||||    
T  6403040 gaaggtatttgtcaagttttaaggagatgtt 6403010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 399 - 429
Target Start/End: Complemental strand, 6432341 - 6432311
Alignment:
Q  399 gaaggtatttgtcaagttttaaggagatgtt 429  Q
    |||||||||||||||||||||||||||||||    
T  6432341 gaaggtatttgtcaagttttaaggagatgtt 6432311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 399 - 429
Target Start/End: Original strand, 6594525 - 6594555
Alignment:
Q  399 gaaggtatttgtcaagttttaaggagatgtt 429  Q
    |||||||||||||||||||||||||||||||    
T  6594525 gaaggtatttgtcaagttttaaggagatgtt 6594555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 375
Target Start/End: Complemental strand, 6410248 - 6410207
Alignment:
Q  334 tgtttgcttccaattttcccaattttcaactgcttgatttga 375  Q
    |||||||||||| |||||||||||| ||||| ||||||||||    
T  6410248 tgtttgcttccatttttcccaatttacaactacttgatttga 6410207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 188
Target Start/End: Complemental strand, 6432629 - 6432557
Alignment:
Q  116 gtttcttggtgatttggtttctataaaccttagtgaatgtag-tatgctcacagaatcagccttgtttgcactc 188  Q
    |||||||| ||||||||| ||||||||||||||| | ||| | ||| ||||||||||||||| ||||| |||||    
T  6432629 gtttcttgctgatttggtgtctataaaccttagtaattgtcgatat-ctcacagaatcagccctgttttcactc 6432557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 7e-22; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 332 - 421
Target Start/End: Complemental strand, 32151545 - 32151456
Alignment:
Q  332 aatgtttgcttccaattttcccaattttcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaag 421  Q
    |||||||||||||| ||| || ||||| |||||||||||||||||  |||||  |||||||||||||||||| |||||||||||||||||    
T  32151545 aatgtttgcttccattttccctaatttgcaactgcttgatttgaggtgttgccataacatatctgaagaaggaatttgtcaagttttaag 32151456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 340 - 419
Target Start/End: Original strand, 18315133 - 18315212
Alignment:
Q  340 cttccaattttcccaattttcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagtttta 419  Q
    |||||| ||| |||||||| ||  ||||||||||||||   |||  ||||||| ||||||||||||||||||||||||||    
T  18315133 cttccattttccccaatttgcagttgcttgatttgagctactgcgataacatacctgaagaaggtatttgtcaagtttta 18315212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 348 - 429
Target Start/End: Original strand, 34936031 - 34936112
Alignment:
Q  348 tttcccaattttcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagatgtt 429  Q
    ||||||||||| || |||||||||||||||  ||||| |  ||||||| |  ||||||||| ||| ||||||||||||||||    
T  34936031 tttcccaatttgcatctgcttgatttgagcgattgcagtggcatatctaatcaaggtatttatcatgttttaaggagatgtt 34936112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 107 - 217
Target Start/End: Original strand, 17627668 - 17627778
Alignment:
Q  107 gttgacttcgtttcttggtgatttggtttctataaaccttagtgaatgtagtatgctcacagaatcagccttgtttgcactcaatgagaagtgtccttta 206  Q
    |||| |||| ||||||||| ||||||| ||| ||||||||||| | ||| | ||||||   ||||||||||||||| |||||  |   || ||||||| |    
T  17627668 gttgtcttcatttcttggtaatttggtgtctgtaaaccttagttattgtcggatgctcgacgaatcagccttgttttcactcgttagtaaatgtccttca 17627767  T
Q  207 cttaatgagat 217  Q
    |||||||||||    
T  17627768 cttaatgagat 17627778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 68
Target Start/End: Original strand, 17627572 - 17627629
Alignment:
Q  11 ttattctggagtagttagtttgttatccaagtgtcaacgtatccaacatttggttctt 68  Q
    |||||||||| || ||  ||||||||||| ||||||| ||||||||||||||| ||||    
T  17627572 ttattctggaatattttctttgttatccatgtgtcaatgtatccaacatttggatctt 17627629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 332 - 373
Target Start/End: Original strand, 17627911 - 17627952
Alignment:
Q  332 aatgtttgcttccaattttcccaattttcaactgcttgattt 373  Q
    |||||||||||||| ||| |||||||| ||||||||||||||    
T  17627911 aatgtttgcttccattttccccaatttgcaactgcttgattt 17627952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 431
Target Start/End: Original strand, 17636268 - 17636348
Alignment:
Q  351 cccaattttcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagatgttct 431  Q
    |||||||| || |||||||||||  |   ||||| ||| ||||| ||  ||||||||||||||||||||||| ||||||||    
T  17636268 cccaatttgcagctgcttgatttacgagattgcaataaaatatcagagaaaggtatttgtcaagttttaaggggatgttct 17636348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 7e-22; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 107 - 188
Target Start/End: Original strand, 1037273 - 1037354
Alignment:
Q  107 gttgacttcgtttcttggtgatttggtttctataaaccttagtgaatgtagtatgctcacagaatcagccttgtttgcactc 188  Q
    |||| ||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||| || ||| |||||||||||    
T  1037273 gttgtctttgtttcttggtgatttggtgtctataaaccttagtgaatgtagcatgctcacagactcggccatgtttgcactc 1037354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 328 - 429
Target Start/End: Original strand, 1037512 - 1037613
Alignment:
Q  328 tcataatgtttgcttccaattttcccaattttcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagatg 427  Q
    ||||| |||||||||||| ||| |||||||| ||| | ||||||||||||   |||  ||||||||||||||||||||||||| ||||||||||||||||    
T  1037512 tcatattgtttgcttccattttccccaatttgcaatttcttgatttgagctcctgccataacatatctgaagaaggtatttgtgaagttttaaggagatg 1037611  T
Q  428 tt 429  Q
    ||    
T  1037612 tt 1037613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 333 - 421
Target Start/End: Original strand, 32785628 - 32785716
Alignment:
Q  333 atgtttgcttccaattttcccaattttcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaag 421  Q
    |||||| |||| | |||| ||||||| ||||| ||||||||||||  ||||  |||||||||||||||||||||||||||| |||||||    
T  32785628 atgttttcttctattttttccaatttgcaactacttgatttgagctattgctataacatatctgaagaaggtatttgtcaatttttaag 32785716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 107 - 188
Target Start/End: Complemental strand, 407 - 326
Alignment:
Q  107 gttgacttcgtttcttggtgatttggtttctataaaccttagtgaatgtagtatgctcacagaatcagccttgtttgcactc 188  Q
    |||| ||| ||||||||| |||||||| |||||||| |||||||||||||| ||||||||| | ||| || |||||||||||    
T  407 gttgtctttgtttcttggcgatttggtgtctataaatcttagtgaatgtagcatgctcacatactcaaccatgtttgcactc 326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0295 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 350 - 429
Target Start/End: Original strand, 494 - 573
Alignment:
Q  350 tcccaattttcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagatgtt 429  Q
    ||||||||| ||| | ||||||||||||   |||  ||||||||||||||||||||||||| ||||| ||||||||||||    
T  494 tcccaatttacaatttcttgatttgagctcctgccataacatatctgaagaaggtatttgtgaagttctaaggagatgtt 573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 328 - 429
Target Start/End: Original strand, 13470583 - 13470681
Alignment:
Q  328 tcataatgtttgcttccaattttcccaattttcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagatg 427  Q
    |||||||||||||||||||||| |||||||| || |||||||||||||   |||||| |  | ||||   | |||||||||||||||||||||||| |||    
T  13470583 tcataatgtttgcttccaatttccccaatttgcagctgcttgatttgaattgttgcaatctcttatc---aaaaggtatttgtcaagttttaaggatatg 13470679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 373
Target Start/End: Original strand, 51764291 - 51764336
Alignment:
Q  328 tcataatgtttgcttccaattttcccaattttcaactgcttgattt 373  Q
    |||||||||||||||||| ||| |||||||| || |||||||||||    
T  51764291 tcataatgtttgcttccattttccccaatttgcagctgcttgattt 51764336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 330 - 429
Target Start/End: Complemental strand, 10614839 - 10614743
Alignment:
Q  330 ataatgtttgcttccaattttcccaattttcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagatgtt 429  Q
    |||| ||||||||||||||| |||||||| ||||||||||||||||   |||||| |  | |||   | ||||||||||||||||||||||||| |||||    
T  10614839 ataaagtttgcttccaatttccccaatttgcaactgcttgatttgaatcgttgcaatctcttat---atgaaggtatttgtcaagttttaaggatatgtt 10614743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 393 - 429
Target Start/End: Complemental strand, 7977764 - 7977728
Alignment:
Q  393 tctgaagaaggtatttgtcaagttttaaggagatgtt 429  Q
    ||||||||||||||| |||||||||||||||||||||    
T  7977764 tctgaagaaggtattggtcaagttttaaggagatgtt 7977728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 431
Target Start/End: Original strand, 10169981 - 10170081
Alignment:
Q  328 tcataatgtttgcttccaattttcccaattttcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagatg 427  Q
    ||||||||||| |||||| |||||| |||||  | ||| ||||||||| |  ||||| | ||||||| ||||   | |||||||||||||||||||| ||    
T  10169981 tcataatgttttcttccatttttcctaatttgaagctgtttgatttgaactcttgcaatcacatatcggaag---gcatttgtcaagttttaaggaggtg 10170077  T
Q  428 ttct 431  Q
    ||||    
T  10170078 ttct 10170081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 431
Target Start/End: Original strand, 10177506 - 10177606
Alignment:
Q  328 tcataatgtttgcttccaattttcccaattttcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagatg 427  Q
    ||||||||||| |||||| |||||| |||||  | ||| ||||||||| |  ||||| | ||||||| ||||   | |||||||||||||||||||| ||    
T  10177506 tcataatgttttcttccatttttcctaatttgaagctgtttgatttgaactcttgcaatcacatatcggaag---gcatttgtcaagttttaaggaggtg 10177602  T
Q  428 ttct 431  Q
    ||||    
T  10177603 ttct 10177606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 328 - 429
Target Start/End: Complemental strand, 9581319 - 9581218
Alignment:
Q  328 tcataatgtttgcttccaattttcccaattttcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagatg 427  Q
    |||||||||||||||| | ||| |||||||| || ||||||||| || ||  ||||  |||||||||| ||  ||||||||||||||||||||  |||||    
T  9581319 tcataatgtttgcttcaattttccccaatttgcagctgcttgatctgcgccattgctgtaacatatctaaaagaggtatttgtcaagttttaaaaagatg 9581220  T
Q  428 tt 429  Q
    ||    
T  9581219 tt 9581218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 328 - 431
Target Start/End: Original strand, 19468350 - 19468450
Alignment:
Q  328 tcataatgtttgcttccaattttcccaattttcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagatg 427  Q
    |||||||||||||||||| |||||||||||| || ||||||||||||| |   ||||   |||||||    ||||| |||||||||||||||||||| ||    
T  19468350 tcataatgtttgcttccatttttcccaatttgcagctgcttgatttgaactcatgcaaccacatatc---ggaaggcatttgtcaagttttaaggaggtg 19468446  T
Q  428 ttct 431  Q
    ||||    
T  19468447 ttct 19468450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 28 - 156
Target Start/End: Original strand, 19468038 - 19468166
Alignment:
Q  28 gtttgttatccaagtgtcaacgtatccaacatttggttcttaaaagagccgattttttgaaagatcgccatgttgccctgttgacttcgtttcttggtga 127  Q
    |||||||||||||||||  | || | |||||||||| |||| || | || |  |||||||| |||| | ||||||    |||| ||| ||||||||||||    
T  19468038 gtttgttatccaagtgtgcaggtttgcaacatttggatcttcaacgtgctgggtttttgaatgatcactatgttgataagttgtctttgtttcttggtga 19468137  T
Q  128 tttggtttctataaaccttagtgaatgta 156  Q
    ||| || ||||||||||||||||||||||    
T  19468138 tttagtgtctataaaccttagtgaatgta 19468166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 328 - 419
Target Start/End: Complemental strand, 9586887 - 9586796
Alignment:
Q  328 tcataatgtttgcttccaattttcccaattttcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagtttta 419  Q
    |||||||||||||||| | ||| |||||||| || ||||||||| || ||  ||||  |||||||||| ||  |||||||||||||||||||    
T  9586887 tcataatgtttgcttcaattttccccaatttgcagctgcttgatctgtgccattgctgtaacatatctaaaagaggtatttgtcaagtttta 9586796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 79 - 187
Target Start/End: Complemental strand, 33161022 - 33160914
Alignment:
Q  79 attttttgaaagatcgccatgttgccctgttgacttcgtttcttggtgatttggtttctataaaccttagtgaatgtagtatgctcacagaatcagcctt 178  Q
    ||||| |||| ||||  |||||||||  |||  ||| |||||||| || |||||| ||||||||||||| || |||| | | ||||||||||||||| ||    
T  33161022 attttctgaatgatcaacatgttgccgagttctctttgtttcttgctgctttggtgtctataaaccttaatggatgttggaggctcacagaatcagcatt 33160923  T
Q  179 gtttgcact 187  Q
    |||| ||||    
T  33160922 gttttcact 33160914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 332 - 423
Target Start/End: Original strand, 41901390 - 41901481
Alignment:
Q  332 aatgtttgcttccaattttcccaattttcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaagga 423  Q
    |||||| ||||||| ||| |||||||| || |||||||||||||||| |||   |  ||||| |||||||||||||  ||||||||||||||    
T  41901390 aatgttcgcttccattttccccaatttgcagctgcttgatttgagcaattgttgtcgcatatttgaagaaggtattgttcaagttttaagga 41901481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 328 - 429
Target Start/End: Original strand, 41889402 - 41889503
Alignment:
Q  328 tcataatgtttgcttccaattttcccaattttcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagatg 427  Q
    |||||||||||||||||| ||| || ||||| || || ||||||||||||| |||   |  ||||| ||| |||||||||  |||||||||||||| |||    
T  41889402 tcataatgtttgcttccattttccctaatttgcagctacttgatttgagcaattgttgtcgcatatttgatgaaggtattactcaagttttaaggatatg 41889501  T
Q  428 tt 429  Q
    ||    
T  41889502 tt 41889503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 107 - 218
Target Start/End: Complemental strand, 28532195 - 28532084
Alignment:
Q  107 gttgacttcgtttcttggtgatttggtttctataaaccttagtgaatgtagtatgctcacagaatcagccttgtttgcactcaatgagaagtgtccttta 206  Q
    |||| |||||||||||||||||||| | || || ||||||||| | |||  || ||| ||||||||| | ||||||||||||  |  ||| |||||||||    
T  28532195 gttgtcttcgtttcttggtgatttgatgtccatcaaccttagtaattgtgataagctaacagaatcatctttgtttgcactcgctaggaactgtccttta 28532096  T
Q  207 cttaatgagatc 218  Q
    |||  |||||||    
T  28532095 cttggtgagatc 28532084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 159 - 218
Target Start/End: Complemental strand, 89196 - 89137
Alignment:
Q  159 atgctcacagaatcagccttgtttgcactcaatgagaagtgtcctttacttaatgagatc 218  Q
    ||||||||||| ||||||||||||||||||||| |||| | ||||| ||| | |||||||    
T  89196 atgctcacagactcagccttgtttgcactcaattagaactatccttcactcagtgagatc 89137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University