View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8431_high_4 (Length: 436)

Name: NF8431_high_4
Description: NF8431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8431_high_4
NF8431_high_4
[»] chr3 (17 HSPs)
chr3 (11-303)||(27206427-27206720)
chr3 (295-420)||(27206114-27206239)
chr3 (27-296)||(31093710-31093979)
chr3 (26-296)||(13002909-13003179)
chr3 (26-296)||(31252407-31252677)
chr3 (33-256)||(16163137-16163360)
chr3 (300-414)||(31094209-31094323)
chr3 (300-420)||(13003415-13003535)
chr3 (300-420)||(31252051-31252171)
chr3 (301-404)||(16162788-16162891)
chr3 (181-240)||(27229150-27229209)
chr3 (47-145)||(25658664-25658762)
chr3 (47-145)||(25665069-25665167)
chr3 (47-145)||(25671474-25671572)
chr3 (47-145)||(25677879-25677977)
chr3 (47-145)||(25684555-25684653)
chr3 (29-123)||(27229267-27229361)
[»] scaffold0029 (2 HSPs)
scaffold0029 (50-145)||(18364-18459)
scaffold0029 (50-145)||(43376-43471)
[»] chr2 (2 HSPs)
chr2 (50-145)||(33120609-33120704)
chr2 (50-145)||(33130352-33130447)


Alignment Details
Target: chr3 (Bit Score: 183; Significance: 8e-99; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 11 - 303
Target Start/End: Complemental strand, 27206720 - 27206427
Alignment:
Q  11 agatgaatgtaaaccaggaaagaaaataattgctccacacaccatattgttgtggtgcttggtataaatgtttgacatcattgtaaaagtcaaagtatac 110  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||    
T  27206720 agatcaatgtaaaccaggaaagaaaataattgctccacac-ccatattgttctggtgcttggtataaacgtttgacatcattgtaaacgtcaaagtatac 27206622  T
Q  111 tatcttagcttgaggatgtttatgccttagtgtctttatgga--nnnnnnnnnnnnnnnattgaagtattttatgaaagagttgtatgctatcaaacatc 208  Q
    ||||||||||||||| ||||||||||||||||||||||||||                 ||| |||||||||||||||||||||||||||||||||||||    
T  27206621 tatcttagcttgagggtgtttatgccttagtgtctttatggattttttaagttttttttattaaagtattttatgaaagagttgtatgctatcaaacatc 27206522  T
Q  209 caaatttatcatagtcttctttcttctgactaattttatttgacaataagtgagcagtacaccctattgaaaatttccctgaaaccaccaactct 303  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||  || |||||| ||||||||||||||    
T  27206521 caaatttatcatagtcttctttcttctgactaatcttatttgacaataagtgagcagtacatcctattgggaagttccctaaaaccaccaactct 27206427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 295 - 420
Target Start/End: Complemental strand, 27206239 - 27206114
Alignment:
Q  295 accaactctcgcaattctgtaatagttttagaaagatcgaataaaacgttatttctaccaatctctcccactacaaacaacaattttttgaagaagctat 394  Q
    |||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27206239 accatctctcgcagttctgtaatagttttagaaagatcgaataaaacgtcatttctaccaatctctcccactacaaacaacaattttttgaagaagctat 27206140  T
Q  395 cacattctgtgaactcacaacaaaac 420  Q
    ||||||||||||||||||||||||||    
T  27206139 cacattctgtgaactcacaacaaaac 27206114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 27 - 296
Target Start/End: Original strand, 31093710 - 31093979
Alignment:
Q  27 ggaaagaaaataattgctccacacaccatattgttgtggtgcttggtataaatgtttgacatcattgtaaaagtcaaagtatactatcttagcttgagga 126  Q
    |||||||||||||| ||||||| |||||||||||||||||||||| |||||| ||||| |||| |||||| ||||||| ||||||||||||||||||||     
T  31093710 ggaaagaaaataatggctccacgcaccatattgttgtggtgcttgatataaacgtttggcatcgttgtaatagtcaaaatatactatcttagcttgaggg 31093809  T
Q  127 tgtttatgccttagtgtctttatggannnnnnnnnnnnnnnattgaagtattttatgaaagagttgtatgctatcaaacatccaaatttatcatagtctt 226  Q
    ||||| ||  ||| | ||| ||||||               ||| |||||||  ||||||| |||||| ||||||||||||||||||| |||||||||||    
T  31093810 tgtttctgttttattatctctatggatttttttagctgctcattaaagtattcgatgaaagtgttgtaagctatcaaacatccaaattcatcatagtctt 31093909  T
Q  227 ctttcttctgactaattttatttgacaataagtgagcagtacaccctattgaaaatttccctgaaaccac 296  Q
    |||||||||||||||| || |||||||||| || || | |||||||||||| ||| || |||||||||||    
T  31093910 ctttcttctgactaatcttttttgacaatatgtcagtattacaccctattggaaagtttcctgaaaccac 31093979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 26 - 296
Target Start/End: Original strand, 13002909 - 13003179
Alignment:
Q  26 aggaaagaaaataattgctccacacaccatattgttgtggtgcttggtataaatgtttgacatcattgtaaaagtcaaagtatactatcttagcttgagg 125  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| |||||| | ||| |||| |||||| | ||||| ||||||||||||||||||||    
T  13002909 aggaaagaaaataattgctccacacaccatattgttgtggtgtttgatataaacgcttggcatcgttgtaataatcaaaatatactatcttagcttgagg 13003008  T
Q  126 atgtttatgccttagtgtctttatggannnnnnnnnnnnnnnattgaagtattttatgaaagagttgtatgctatcaaacatccaaatttatcatagtct 225  Q
     ||||| ||  ||| ||||| ||||||               ||| |||||||  |||| || |||||| ||||||||||||||||||| ||||||||||    
T  13003009 gtgtttctgttttattgtctctatggatttttttagctgctcattaaagtattcaatgagagtgttgtaagctatcaaacatccaaattcatcatagtct 13003108  T
Q  226 tctttcttctgactaattttatttgacaataagtgagcagtacaccctattgaaaatttccctgaaaccac 296  Q
    ||||||||||||||||| || |||||||||| || || | ||||||| |||| ||| ||||||| ||||||    
T  13003109 tctttcttctgactaatcttttttgacaatatgtcagtattacaccccattggaaagttccctggaaccac 13003179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 26 - 296
Target Start/End: Complemental strand, 31252677 - 31252407
Alignment:
Q  26 aggaaagaaaataattgctccacacaccatattgttgtggtgcttggtataaatgtttgacatcattgtaaaagtcaaagtatactatcttagcttgagg 125  Q
    ||||||||||||||||||||||||||||||| ||||| |||| ||| |||||| | ||| |||| |||||| | ||||| ||||||||||||||||||||    
T  31252677 aggaaagaaaataattgctccacacaccatactgttgaggtgtttgatataaacgcttggcatcgttgtaataatcaaaatatactatcttagcttgagg 31252578  T
Q  126 atgtttatgccttagtgtctttatggannnnnnnnnnnnnnnattgaagtattttatgaaagagttgtatgctatcaaacatccaaatttatcatagtct 225  Q
     ||||| ||  ||| ||||| ||||||               ||| |||||||  |||| || |||||| ||||||||||||||||||| ||||||||||    
T  31252577 gtgtttctgttttattgtctctatggatttttttagctgctcattaaagtattcaatgagagtgttgtaagctatcaaacatccaaattcatcatagtct 31252478  T
Q  226 tctttcttctgactaattttatttgacaataagtgagcagtacaccctattgaaaatttccctgaaaccac 296  Q
    ||||||||||||||||| || |||||||||| || || | ||||||| |||| ||| ||||||| ||||||    
T  31252477 tctttcttctgactaatcttttttgacaatatgtcagtattacaccccattggaaagttccctggaaccac 31252407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 33 - 256
Target Start/End: Complemental strand, 16163360 - 16163137
Alignment:
Q  33 aaaataattgctccacacaccatattgttgtggtgcttggtataaatgtttgacatcattgtaaaagtcaaagtatactatcttagcttgaggatgttta 132  Q
    ||||||||||||||||| ||||||||||||||||||||  |||||| ||||| |||| |||||  ||||||| |||| |||||||||||||||||||||     
T  16163360 aaaataattgctccacagaccatattgttgtggtgcttcatataaacgtttggcatcgttgtagtagtcaaaatatattatcttagcttgaggatgtttc 16163261  T
Q  133 tgccttagtgtctttatggannnnnnnnnnnnnnnattgaagtattttatgaaagagttgtatgctatcaaacatccaaatttatcatagtcttctttct 232  Q
    |||| || ||||| ||||||               ||| |||||||  |||||||||||||| ||||| ||||||||||||| |||||| || |||||||    
T  16163260 tgccgtaatgtctctatggatttttttagttgctcattaaagtattcgatgaaagagttgtaagctattaaacatccaaattcatcataatcctctttct 16163161  T
Q  233 tctgactaattttatttgacaata 256  Q
    | || ||||| || |||| |||||    
T  16163160 tttggctaatcttttttgtcaata 16163137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 300 - 414
Target Start/End: Original strand, 31094209 - 31094323
Alignment:
Q  300 ctctcgcaattctgtaatagttttagaaagatcgaataaaacgttatttctaccaatctctcccactacaaacaacaattttttgaagaagctatcacat 399  Q
    |||| ||| |||||||||||||||  |||||| | | ||||  | ||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  31094209 ctcttgcagttctgtaatagttttgaaaagatggtaaaaaatatcatttccaccaatctctcccactataaacaacgattttttgaagaagctatcacat 31094308  T
Q  400 tctgtgaactcacaa 414  Q
    |||||||||||||||    
T  31094309 tctgtgaactcacaa 31094323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 300 - 420
Target Start/End: Original strand, 13003415 - 13003535
Alignment:
Q  300 ctctcgcaattctgtaatagttttagaaagatcgaataaaacgttatttctaccaatctctcccactacaaacaacaattttttgaagaagctatcacat 399  Q
    |||||| | |||| ||||||||||||||||||   | ||||  | ||||| ||||||||||||||||| ||||||  |||||||||||||||| ||||||    
T  13003415 ctctcgtagttctttaatagttttagaaagatgataaaaaatatcatttccaccaatctctcccactataaacaatgattttttgaagaagctgtcacat 13003514  T
Q  400 tctgtgaactcacaacaaaac 420  Q
    |||||||||||| || |||||    
T  13003515 tctgtgaactcataaaaaaac 13003535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 300 - 420
Target Start/End: Complemental strand, 31252171 - 31252051
Alignment:
Q  300 ctctcgcaattctgtaatagttttagaaagatcgaataaaacgttatttctaccaatctctcccactacaaacaacaattttttgaagaagctatcacat 399  Q
    |||||| | |||||||||||||||||||||||   | ||||  | ||||| ||||||||||||||||| ||||||  | |||||||||||||| ||||||    
T  31252171 ctctcgtagttctgtaatagttttagaaagatgataaaaaatatcatttccaccaatctctcccactataaacaatgagtttttgaagaagctgtcacat 31252072  T
Q  400 tctgtgaactcacaacaaaac 420  Q
    |||||||||||| || |||||    
T  31252071 tctgtgaactcataaaaaaac 31252051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 301 - 404
Target Start/End: Complemental strand, 16162891 - 16162788
Alignment:
Q  301 tctcgcaattctgtaatagttttagaaagatcgaataaaacgttatttctaccaatctctcccactacaaacaacaattttttgaagaagctatcacatt 400  Q
    ||||||| |||||||||||||||||||| ||  || ||||| | ||||| |||||| |||||||||| ||| ||  ||  |||||||||||||||||| |    
T  16162891 tctcgcagttctgtaatagttttagaaatatgtaaaaaaacatcatttccaccaatttctcccactataaataatgatcgtttgaagaagctatcacact 16162792  T
Q  401 ctgt 404  Q
    ||||    
T  16162791 ctgt 16162788  T

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Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 181 - 240
Target Start/End: Complemental strand, 27229209 - 27229150
Alignment:
Q  181 atgaaagagttgtatgctatcaaacatccaaatttatcatagtcttctttcttctgacta 240  Q
    ||||||| |||||| | ||||||||||||||||| |||||| ||||||||||||||||||    
T  27229209 atgaaagtgttgtaagttatcaaacatccaaattcatcataatcttctttcttctgacta 27229150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 47 - 145
Target Start/End: Complemental strand, 25658762 - 25658664
Alignment:
Q  47 acacaccatattgttgtggtgcttggtataaatgtttgacatcattgtaaaagtcaaagtatactatcttagcttgaggatgtttatgccttagtgtct 145  Q
    ||||||||||||| ||||||| ||| |||||| |||||| ||  |||||  ||||||| |||| ||||||||||||||| | |||||| |||| |||||    
T  25658762 acacaccatattgctgtggtgtttgatataaacgtttgagattgttgtagtagtcaaaatatattatcttagcttgagggtatttatgtcttaatgtct 25658664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 47 - 145
Target Start/End: Complemental strand, 25665167 - 25665069
Alignment:
Q  47 acacaccatattgttgtggtgcttggtataaatgtttgacatcattgtaaaagtcaaagtatactatcttagcttgaggatgtttatgccttagtgtct 145  Q
    ||||||||||||| ||||||| ||| |||||| |||||| ||  |||||  ||||||| |||| ||||||||||||||| | |||||| |||| |||||    
T  25665167 acacaccatattgctgtggtgtttgatataaacgtttgagattgttgtagtagtcaaaatatattatcttagcttgagggtatttatgtcttaatgtct 25665069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 47 - 145
Target Start/End: Complemental strand, 25671572 - 25671474
Alignment:
Q  47 acacaccatattgttgtggtgcttggtataaatgtttgacatcattgtaaaagtcaaagtatactatcttagcttgaggatgtttatgccttagtgtct 145  Q
    ||||||||||||| ||||||| ||| |||||| |||||| ||  |||||  ||||||| |||| ||||||||||||||| | |||||| |||| |||||    
T  25671572 acacaccatattgctgtggtgtttgatataaacgtttgagattgttgtagtagtcaaaatatattatcttagcttgagggtatttatgtcttaatgtct 25671474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 47 - 145
Target Start/End: Complemental strand, 25677977 - 25677879
Alignment:
Q  47 acacaccatattgttgtggtgcttggtataaatgtttgacatcattgtaaaagtcaaagtatactatcttagcttgaggatgtttatgccttagtgtct 145  Q
    ||||||||||||| ||||||| ||| |||||| |||||| ||  |||||  ||||||| |||| ||||||||||||||| | |||||| |||| |||||    
T  25677977 acacaccatattgctgtggtgtttgatataaacgtttgagattgttgtagtagtcaaaatatattatcttagcttgagggtatttatgtcttaatgtct 25677879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 47 - 145
Target Start/End: Complemental strand, 25684653 - 25684555
Alignment:
Q  47 acacaccatattgttgtggtgcttggtataaatgtttgacatcattgtaaaagtcaaagtatactatcttagcttgaggatgtttatgccttagtgtct 145  Q
    ||||||||||||| ||||||| ||| |||||| |||||| ||  |||||  ||||||| |||| ||||||||||||||| | |||||| |||| |||||    
T  25684653 acacaccatattgctgtggtgtttgatataaacgtttgagattgttgtagtagtcaaaatatattatcttagcttgagggtatttatgtcttaatgtct 25684555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 29 - 123
Target Start/End: Complemental strand, 27229361 - 27229267
Alignment:
Q  29 aaagaaaataattgctccacacaccatattgttgtggtgcttggtataaatgtttgacatcattgtaaaagtcaaagtatactatcttagcttga 123  Q
    ||||||||||||| |||| || | ||||||||||||||| ||| |||||| ||||||||  ||||||   ||||||||||| |||| ||||||||    
T  27229361 aaagaaaataattactccgcatatcatattgttgtggtgattgatataaacgtttgacaatattgtagtggtcaaagtatattatcctagcttga 27229267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 50 - 145
Target Start/End: Original strand, 18364 - 18459
Alignment:
Q  50 caccatattgttgtggtgcttggtataaatgtttgacatcattgtaaaagtcaaagtatactatcttagcttgaggatgtttatgccttagtgtct 145  Q
    ||||||||||||| |||| ||| |||||| ||||| ||||||| ||  |||||||||||| ||||||| ||| ||| || || || ||||||||||    
T  18364 caccatattgttgcggtgtttgatataaacgtttggcatcattatagtagtcaaagtatattatcttaacttcagggtgcttctgtcttagtgtct 18459  T

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Target: scaffold0029; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 145
Target Start/End: Original strand, 43376 - 43471
Alignment:
Q  50 caccatattgttgtggtgcttggtataaatgtttgacatcattgtaaaagtcaaagtatactatcttagcttgaggatgtttatgccttagtgtct 145  Q
    ||||||||||||| |||| ||| ||||||  |||| ||||||| ||  |||||||||||| ||||||| ||| ||| || || || ||||||||||    
T  43376 caccatattgttgcggtgtttgatataaacatttggcatcattatagtagtcaaagtatattatcttaacttcagggtgcttctgtcttagtgtct 43471  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 50 - 145
Target Start/End: Original strand, 33120609 - 33120704
Alignment:
Q  50 caccatattgttgtggtgcttggtataaatgtttgacatcattgtaaaagtcaaagtatactatcttagcttgaggatgtttatgccttagtgtct 145  Q
    ||||||||||||| |||| ||| |||||| ||||| ||||||| ||  |||||||||||| ||||||| ||| ||| || || || ||||||||||    
T  33120609 caccatattgttgcggtgtttgatataaacgtttggcatcattatagtagtcaaagtatattatcttaacttcagggtgcttctgtcttagtgtct 33120704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 50 - 145
Target Start/End: Original strand, 33130352 - 33130447
Alignment:
Q  50 caccatattgttgtggtgcttggtataaatgtttgacatcattgtaaaagtcaaagtatactatcttagcttgaggatgtttatgccttagtgtct 145  Q
    ||||||||||||| |||| ||| |||||| ||||| ||||||| ||  |||||||||||| ||||||| ||| ||| || || || ||||||||||    
T  33130352 caccatattgttgcggtgtttgatataaacgtttggcatcattatagtagtcaaagtatattatcttaacttcagggtgcttctgtcttagtgtct 33130447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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