View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8431_low_14 (Length: 356)

Name: NF8431_low_14
Description: NF8431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8431_low_14
NF8431_low_14
[»] chr8 (2 HSPs)
chr8 (1-354)||(43699444-43699806)
chr8 (68-200)||(43858216-43858348)
[»] scaffold0345 (1 HSPs)
scaffold0345 (68-200)||(2222-2354)
[»] chr6 (2 HSPs)
chr6 (68-200)||(11357861-11357993)
chr6 (260-348)||(11358357-11358445)
[»] chr3 (7 HSPs)
chr3 (72-200)||(10886671-10886799)
chr3 (260-350)||(8872017-8872107)
chr3 (260-350)||(10886273-10886363)
chr3 (72-200)||(8872409-8872537)
chr3 (260-350)||(2403956-2404046)
chr3 (132-183)||(26159651-26159702)
chr3 (72-189)||(2403572-2403689)
[»] chr5 (2 HSPs)
chr5 (68-198)||(20121931-20122061)
chr5 (132-184)||(42206473-42206525)
[»] chr2 (2 HSPs)
chr2 (132-189)||(28635531-28635588)
chr2 (123-183)||(15324484-15324544)
[»] chr1 (1 HSPs)
chr1 (132-184)||(45135544-45135596)


Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 354
Target Start/End: Complemental strand, 43699806 - 43699444
Alignment:
Q  1 tgtcttcaaaaattcatatcactttggaccgcaacaggatcactttgaaccgcaacaggaataggtggagcaa---------gttgcctcttatcagacc 91  Q
    ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||    
T  43699806 tgtcttcgaaaattcatatcactttagaccgcaacaggatcactttgaaccgcaacaggaataggtggagcaactagagcaagttgcctcttatcagacc 43699707  T
Q  92 caaattcttgctcaagatcactagggttggtatcttgatagtaatctatattggtcaccgcatcacaccaagggccaacgatacgcatatcaggaaagtg 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43699706 caaattcttgctcaagatcactagggttggtatcttgatagtaatctatattggtcaccgcatcacaccaagggccaacgatacgcatatcaggaaagtg 43699607  T
Q  192 ttggtccctttacccttctcataatcttgcaacttctcagagannnnnnnnnnnnnnnnnnnnnnnnnagcaacttccctataagcattcttgttgttat 291  Q
    ||||||||||||||||||||||||||||||||||| | |||||                         |||||||||||||||||||||||  |||||||    
T  43699606 ttggtccctttacccttctcataatcttgcaactttttagagattttgttttcaactttttgttttttagcaacttccctataagcattctaattgttat 43699507  T
Q  292 gtagtcatttacaccgatcaatggtgtgaccaattgttgcacacttttgacaataagcaagga 354  Q
    |||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||    
T  43699506 gtagccatttacactgaccaatggtgtgaccaattgttgcacacttttgacaataagcaagga 43699444  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 68 - 200
Target Start/End: Original strand, 43858216 - 43858348
Alignment:
Q  68 gagcaagttgcctcttatcagacccaaattcttgctcaagatcactagggttggtatcttgatagtaatctatattggtcaccgcatcacaccaagggcc 167  Q
    ||||||||| |||| ||||||| ||||| |||||||||||||||   | | ||| |||| || ||||||||||||  |||||  ||||||||||||  ||    
T  43858216 gagcaagttacctcctatcagatccaaaatcttgctcaagatcatcggtggtggaatctcgacagtaatctatatcagtcacaacatcacaccaagtacc 43858315  T
Q  168 aacgatacgcatatcaggaaagtgttggtccct 200  Q
    ||  |||| ||||||| ||||||||||||||||    
T  43858316 aattatacacatatcaagaaagtgttggtccct 43858348  T

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Target: scaffold0345 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 68 - 200
Target Start/End: Original strand, 2222 - 2354
Alignment:
Q  68 gagcaagttgcctcttatcagacccaaattcttgctcaagatcactagggttggtatcttgatagtaatctatattggtcaccgcatcacaccaagggcc 167  Q
    |||||||||||||| ||||| | ||||| |||||||||||| || | | | ||| |||||||||||||||||||| ||||||  ||||||||||||| ||    
T  2222 gagcaagttgcctcctatcatatccaaaatcttgctcaagaccagtggtggtggaatcttgatagtaatctatatcggtcacaacatcacaccaaggacc 2321  T
Q  168 aacgatacgcatatcaggaaagtgttggtccct 200  Q
    ||  |||| |||||| |||||||||| ||||||    
T  2322 aattatacacatatccggaaagtgttcgtccct 2354  T

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Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 68 - 200
Target Start/End: Original strand, 11357861 - 11357993
Alignment:
Q  68 gagcaagttgcctcttatcagacccaaattcttgctcaagatcactagggttggtatcttgatagtaatctatattggtcaccgcatcacaccaagggcc 167  Q
    |||||||||||||| ||||| | ||||| |||||||||||| || | | | ||| |||||||||||||||||||| ||||||  ||||||||||||| ||    
T  11357861 gagcaagttgcctcctatcatatccaaaatcttgctcaagaccagtggtggtggaatcttgatagtaatctatatcggtcacaacatcacaccaaggacc 11357960  T
Q  168 aacgatacgcatatcaggaaagtgttggtccct 200  Q
    ||  |||| |||||| |||||||||| ||||||    
T  11357961 aattatacacatatccggaaagtgttcgtccct 11357993  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 348
Target Start/End: Original strand, 11358357 - 11358445
Alignment:
Q  260 agcaacttccctataagcattcttgttgttatgtagtcatttacaccgatcaatggtgtgaccaattgttgcacacttttgacaataag 348  Q
    |||||||||| || |||| || | ||||||||| || ||||||||| || ||||    ||||||||||||||||| || ||||||||||    
T  11358357 agcaacttccttagaagccttttggttgttatgcagccatttacactgaccaattacatgaccaattgttgcacagttatgacaataag 11358445  T

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Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 72 - 200
Target Start/End: Complemental strand, 10886799 - 10886671
Alignment:
Q  72 aagttgcctcttatcagacccaaattcttgctcaagatcactagggttggtatcttgatagtaatctatattggtcaccgcatcacaccaagggccaacg 171  Q
    ||||| |||| ||||||| |||||  | |||||||||||||||| | ||| |||||||||||||||||||| ||| || |||||||||||||| ||        
T  10886799 aagtttcctcctatcagaaccaaaaccatgctcaagatcactagtggtggaatcttgatagtaatctatatcggttacagcatcacaccaaggaccggtt 10886700  T
Q  172 atacgcatatcaggaaagtgttggtccct 200  Q
    ||||||| |||||||||| ||||||||||    
T  10886699 atacgcaaatcaggaaagggttggtccct 10886671  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 260 - 350
Target Start/End: Complemental strand, 8872107 - 8872017
Alignment:
Q  260 agcaacttccctataagcattcttgttgttatgtagtcatttacaccgatcaatggtgtgaccaattgttgcacacttttgacaataagca 350  Q
    ||||||||||||| |||  |||| |||||||||||| ||||||||| || |||||| |||||||||||||||||| || ||||||||||||    
T  8872107 agcaacttccctagaagtcttctggttgttatgtagccatttacactgaccaatggcgtgaccaattgttgcacagttatgacaataagca 8872017  T

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Target: chr3; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 260 - 350
Target Start/End: Complemental strand, 10886363 - 10886273
Alignment:
Q  260 agcaacttccctataagcattcttgttgttatgtagtcatttacaccgatcaatggtgtgaccaattgttgcacacttttgacaataagca 350  Q
    ||||||||||||| |||| |||| ||||||||| || ||||||||| || |||||| |||||||||||||||||| ||  |||||||||||    
T  10886363 agcaacttccctagaagccttctagttgttatgcagccatttacactgaccaatggcgtgaccaattgttgcacaattacgacaataagca 10886273  T

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Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 72 - 200
Target Start/End: Complemental strand, 8872537 - 8872409
Alignment:
Q  72 aagttgcctcttatcagacccaaattcttgctcaagatcactagggttggtatcttgatagtaatctatattggtcaccgcatcacaccaagggccaacg 171  Q
    |||||| ||| ||||||| |||||  | |||||||||||||| | | ||| ||||||| |||||||||||| ||| ||  ||||||||||||| |||       
T  8872537 aagttgtctcctatcagaaccaaaaccatgctcaagatcactggtgctggaatcttgacagtaatctatatcggttacaacatcacaccaaggaccagtt 8872438  T
Q  172 atacgcatatcaggaaagtgttggtccct 200  Q
    ||||||| |||||||||| ||||||||||    
T  8872437 atacgcaaatcaggaaagggttggtccct 8872409  T

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Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 260 - 350
Target Start/End: Original strand, 2403956 - 2404046
Alignment:
Q  260 agcaacttccctataagcattcttgttgttatgtagtcatttacaccgatcaatggtgtgaccaattgttgcacacttttgacaataagca 350  Q
    ||||||||||||| |||| |||| ||||||||| |  |||||| || || |||||| |||||||||||||||||| || ||||||||||||    
T  2403956 agcaacttccctagaagctttctggttgttatgcaaccatttaaactgaccaatggcgtgaccaattgttgcacagttatgacaataagca 2404046  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 132 - 183
Target Start/End: Original strand, 26159651 - 26159702
Alignment:
Q  132 gtaatctatattggtcaccgcatcacaccaagggccaacgatacgcatatca 183  Q
    |||||| |||| |||||||||||||||||||||||||| ||||| |||||||    
T  26159651 gtaatccatatcggtcaccgcatcacaccaagggccaatgatacacatatca 26159702  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 72 - 189
Target Start/End: Original strand, 2403572 - 2403689
Alignment:
Q  72 aagttgcctcttatcagacccaaattcttgctcaagatcactagggttggtatcttgatagtaatctatattggtcaccgcatcacaccaagggccaacg 171  Q
    |||||| ||| ||||| | ||||| || |||||||||||||||| | ||| ||||||| ||||||||| || ||| ||  ||||||||||||| ||        
T  2403572 aagttgtctcctatcataaccaaaatcatgctcaagatcactagtggtggaatcttgacagtaatctaaatcggttacaacatcacaccaaggaccggtt 2403671  T
Q  172 atacgcatatcaggaaag 189  Q
    ||||||| ||||||||||    
T  2403672 atacgcaaatcaggaaag 2403689  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 68 - 198
Target Start/End: Original strand, 20121931 - 20122061
Alignment:
Q  68 gagcaagttgcctcttatcagacccaaattcttgctcaagatcactagggttggtatcttgatagtaatctatattggtcaccgcatcacaccaagggcc 167  Q
    |||| ||||||||| ||||| | ||||| || |||||||| |||||   | ||| ||||||| | ||||||| ||  |||||  ||||||||||||| ||    
T  20121931 gagctagttgcctcctatcatatccaaaatcatgctcaaggtcactgttggtggaatcttgacattaatctaaatcagtcacaacatcacaccaaggacc 20122030  T
Q  168 aacgatacgcatatcaggaaagtgttggtcc 198  Q
    |   |||||||||||||||||||||||||||    
T  20122031 agttatacgcatatcaggaaagtgttggtcc 20122061  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 184
Target Start/End: Original strand, 42206473 - 42206525
Alignment:
Q  132 gtaatctatattggtcaccgcatcacaccaagggccaacgatacgcatatcag 184  Q
    |||||| ||||  ||||||||||||||||||||| ||  ||||||||||||||    
T  42206473 gtaatccatatcagtcaccgcatcacaccaagggtcagtgatacgcatatcag 42206525  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 132 - 189
Target Start/End: Complemental strand, 28635588 - 28635531
Alignment:
Q  132 gtaatctatattggtcaccgcatcacaccaagggccaacgatacgcatatcaggaaag 189  Q
    |||||| |||| ||||||||||||||||||||| |||  |||||||||||||| ||||    
T  28635588 gtaatccatatcggtcaccgcatcacaccaaggaccagtgatacgcatatcagaaaag 28635531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 183
Target Start/End: Complemental strand, 15324544 - 15324484
Alignment:
Q  123 atcttgatagtaatctatattggtcaccgcatcacaccaagggccaacgatacgcatatca 183  Q
    ||||||| ||||||| |||||||||| | ||||||||||||||||| | ||| ||||||||    
T  15324544 atcttgacagtaatccatattggtcatcacatcacaccaagggccagcaatatgcatatca 15324484  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 184
Target Start/End: Original strand, 45135544 - 45135596
Alignment:
Q  132 gtaatctatattggtcaccgcatcacaccaagggccaacgatacgcatatcag 184  Q
    |||||| ||||  ||||||||||||||||||||||||  |||| |||||||||    
T  45135544 gtaatccatatcagtcaccgcatcacaccaagggccagtgataagcatatcag 45135596  T

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