View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8431_low_17 (Length: 287)
Name: NF8431_low_17
Description: NF8431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8431_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 43001112 - 43001380
Alignment:
| Q |
1 |
agaaagagttattcttgaagaaatttgctgcatttggaaaagatttccggaaaattgcttctttccttgatcacaagacaactgcagactgcgttgagtt |
100 |
Q |
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| T |
43001112 |
agaaagaactattcttggagaaatttgctgcatttggaaaagatttccggaaaattgcttctttccttgatcacaagacaactgcagactgcattgagtt |
43001211 |
T |
|
| Q |
101 |
ctactacaagaatcacaaatctgaatgttttgagaaactgaagaggaaagatgttggtaagctagggaagtcatatgcagctaaaactaactcgatgaca |
200 |
Q |
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| T |
43001212 |
ctactacaagaatcacaaatccgaatgttttgagaaactgaagaggaaagatattggtaagctagggaagtcatatgcagctaaaactaacttgatggca |
43001311 |
T |
|
| Q |
201 |
tcaggtaaaaaatggaaccatgaagttaatgtttcttcacttgatattttgagtgctgcttcagtgatg |
269 |
Q |
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| T |
43001312 |
tcaggtaaaaaatggaatcatgaagttaatgtttcttcacttgatattttgagtgctgcttcagtgatg |
43001380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 10696112 - 10696264
Alignment:
| Q |
1 |
agaaagagttattcttgaagaaatttgctgcatttggaaaagatttccggaaaattgcttctttccttgatcacaagacaactgcagactgcgttgagtt |
100 |
Q |
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|||||||| | |||||| ||||||||||||| |||||||||||||| | |||||| || |||||||||| ||||||||||| || ||||| || || || |
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| T |
10696112 |
agaaagaggttttcttggagaaatttgctgcctttggaaaagattttcaaaaaatttctactttccttgaccacaagacaacagcggactgtgtggaatt |
10696211 |
T |
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| Q |
101 |
ctactacaagaatcacaaatctgaatgttttgagaaactgaagaggaaagatg |
153 |
Q |
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| T |
10696212 |
ctactacaaaaatcacaagtctgattgttttgagaaaatcaagaagaaagatg |
10696264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 12 - 137
Target Start/End: Complemental strand, 10695493 - 10695368
Alignment:
| Q |
12 |
ttcttgaagaaatttgctgcatttggaaaagatttccggaaaattgcttctttccttgatcacaagacaactgcagactgcgttgagttctactacaaga |
111 |
Q |
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|||||| |||||||||| || |||||||||||||| || |||||| || |||||||||| ||||||||||| |||||||| ||||| ||||| ||||| | |
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| T |
10695493 |
ttcttggagaaatttgcggcctttggaaaagattttcgaaaaatttctactttccttgaccacaagacaacagcagactgtgttgaattctaatacaaaa |
10695394 |
T |
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| Q |
112 |
atcacaaatctgaatgttttgagaaa |
137 |
Q |
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|||| || ||||| |||||||||||| |
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| T |
10695393 |
atcataagtctgattgttttgagaaa |
10695368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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