View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8431_low_18 (Length: 283)

Name: NF8431_low_18
Description: NF8431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8431_low_18
NF8431_low_18
[»] scaffold0053 (2 HSPs)
scaffold0053 (86-276)||(30979-31169)
scaffold0053 (14-72)||(30891-30949)
[»] chr7 (11 HSPs)
chr7 (86-276)||(42080812-42081002)
chr7 (136-276)||(45406697-45406838)
chr7 (14-72)||(42081040-42081098)
chr7 (136-276)||(4119951-4120091)
chr7 (165-214)||(22528934-22528983)
chr7 (108-200)||(38788964-38789060)
chr7 (104-207)||(17474750-17474857)
chr7 (104-207)||(17510234-17510341)
chr7 (104-207)||(17542873-17542980)
chr7 (104-207)||(17578357-17578464)
chr7 (136-240)||(43989682-43989786)
[»] chr3 (7 HSPs)
chr3 (129-276)||(431961-432109)
chr3 (136-252)||(20934967-20935083)
chr3 (136-214)||(50331967-50332045)
chr3 (165-239)||(32970441-32970516)
chr3 (136-252)||(17764121-17764237)
chr3 (136-252)||(19065441-19065557)
chr3 (136-200)||(42400405-42400469)
[»] chr4 (7 HSPs)
chr4 (104-276)||(42757527-42757701)
chr4 (106-214)||(13228658-13228770)
chr4 (136-214)||(50158188-50158266)
chr4 (108-155)||(35308158-35308209)
chr4 (137-202)||(24183445-24183510)
chr4 (170-207)||(39976693-39976730)
chr4 (136-200)||(28475656-28475720)
[»] chr2 (6 HSPs)
chr2 (107-276)||(6466121-6466287)
chr2 (106-274)||(3395400-3395573)
chr2 (151-214)||(36727642-36727705)
chr2 (138-274)||(36720068-36720205)
chr2 (130-177)||(30637861-30637908)
chr2 (136-200)||(19040697-19040761)
[»] scaffold1315 (1 HSPs)
scaffold1315 (115-276)||(489-652)
[»] scaffold1293 (1 HSPs)
scaffold1293 (115-276)||(1419-1582)
[»] chr8 (3 HSPs)
chr8 (113-276)||(18953297-18953464)
chr8 (136-213)||(10901452-10901529)
chr8 (170-207)||(21587045-21587082)
[»] chr5 (3 HSPs)
chr5 (136-276)||(9012660-9012801)
chr5 (140-276)||(38015878-38016015)
chr5 (227-276)||(24539672-24539721)
[»] chr6 (3 HSPs)
chr6 (151-205)||(31737233-31737287)
chr6 (136-214)||(1599682-1599760)
chr6 (136-200)||(7428507-7428571)
[»] chr1 (5 HSPs)
chr1 (113-214)||(43387108-43387213)
chr1 (136-206)||(22636335-22636405)
chr1 (136-252)||(20306703-20306819)
chr1 (108-198)||(16851931-16852024)
chr1 (136-200)||(40946519-40946583)
[»] scaffold0051 (1 HSPs)
scaffold0051 (168-209)||(19051-19092)
[»] scaffold1750 (1 HSPs)
scaffold1750 (136-212)||(295-370)
[»] scaffold1345 (1 HSPs)
scaffold1345 (136-212)||(1848-1923)


Alignment Details
Target: scaffold0053 (Bit Score: 183; Significance: 5e-99; HSPs: 2)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 86 - 276
Target Start/End: Original strand, 30979 - 31169
Alignment:
Q  86 gttgtggagggcggcgggtcttggtgatggatcacagacacgaagagtctcttaatggagagatattaatgtgtcagtcgtgagttaaaatttgacatta 185  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  30979 gttgtggagggcggcgggtcttggtgatggatcacagacacgaagagtctcttaatggagagatattaatttgtcagtcgtgagttaaaatttgacatta 31078  T
Q  186 gatgcaagagtagatgttgagaaacatatgaggagattatccatatacctaatgctttaggactttgggtgaagaagtgatgtccatctca 276  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  31079 gatgcaagagtagatgttgagaaacatatgaggagattatccatatacctaatgctttaggactttgggtgaagaagtgatgtcgatctca 31169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 14 - 72
Target Start/End: Original strand, 30891 - 30949
Alignment:
Q  14 acatcaatgttgacttacatataagagccaacagtggtatcacatctcggttcaacatt 72  Q
    |||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  30891 acatcattgttgacttgcatataagagccaacggtggtatcacatctcggttcaacatt 30949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 175; Significance: 3e-94; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 86 - 276
Target Start/End: Complemental strand, 42081002 - 42080812
Alignment:
Q  86 gttgtggagggcggcgggtcttggtgatggatcacagacacgaagagtctcttaatggagagatattaatgtgtcagtcgtgagttaaaatttgacatta 185  Q
    ||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42081002 gttgtggagggcggcaggtcttggtgatggatcacatatacgaagagtctcttaatggagagatattaatgtgtcagtcgtgagttaaaatttgacatta 42080903  T
Q  186 gatgcaagagtagatgttgagaaacatatgaggagattatccatatacctaatgctttaggactttgggtgaagaagtgatgtccatctca 276  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  42080902 gatgcaagagtagatgttgagaaacatatgaggagattatccatatacctaatgctttaggactttgggtgaagaagtgatgtcgatctca 42080812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 136 - 276
Target Start/End: Original strand, 45406697 - 45406838
Alignment:
Q  136 cttaatggagagatattaatgtgtcagtcgtgagttaaaatttgacattagatgcaagagtagatgttgagaaacatatga-ggagattatccatatacc 234  Q
    ||||||||||| || ||||||||||| | |||||||||||||||||||| |||| ||||| |||||||||||||||||||| ||||||||||||||||||    
T  45406697 cttaatggagaaatgttaatgtgtcaattgtgagttaaaatttgacatttgatgtaagaggagatgttgagaaacatatgagggagattatccatatacc 45406796  T
Q  235 taatgctttaggactttgggtgaagaagtgatgtccatctca 276  Q
    ||||||||||||||||||| ||||||||||||||| ||||||    
T  45406797 taatgctttaggactttggttgaagaagtgatgtcgatctca 45406838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 14 - 72
Target Start/End: Complemental strand, 42081098 - 42081040
Alignment:
Q  14 acatcaatgttgacttacatataagagccaacagtggtatcacatctcggttcaacatt 72  Q
    |||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||    
T  42081098 acatcaatgttgacttgcatataagacccaacggtggtatcacatctcggttcaacatt 42081040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 276
Target Start/End: Complemental strand, 4120091 - 4119951
Alignment:
Q  136 cttaatggagagatattaatgtgtcagtcgtgagttaaaatttgacattagatgcaagagtagatgttgagaaacatatgag-gagattatccatatacc 234  Q
    ||||||||||||||| ||| ||||||   || ||||||||||| ||||| ||| ||| ||| ||||||||| ||||||| || ||| |   || |||| |    
T  4120091 cttaatggagagatactaacgtgtcaagtgttagttaaaatttcacattggattcaaaagtggatgttgagcaacatataagtgag-tggcccttatagc 4119993  T
Q  235 taatgctttaggactttgggtgaagaagtgatgtccatctca 276  Q
    |||||| |||||||||||| |||||| ||||| || ||||||    
T  4119992 taatgccttaggactttggatgaagatgtgatatcaatctca 4119951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 165 - 214
Target Start/End: Original strand, 22528934 - 22528983
Alignment:
Q  165 gtgagttaaaatttgacattagatgcaagagtagatgttgagaaacatat 214  Q
    |||||||||||||| |||||  ||||||||||| ||||||||||||||||    
T  22528934 gtgagttaaaattttacattgtatgcaagagtaaatgttgagaaacatat 22528983  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 108 - 200
Target Start/End: Complemental strand, 38789060 - 38788964
Alignment:
Q  108 ggtgatggatcacagacacgaagagtct----cttaatggagagatattaatgtgtcagtcgtgagttaaaatttgacattagatgcaagagtagat 200  Q
    |||| ||||||||| ||||| |||||||    |||||||||||||| ||||||||| |   || ||||||||||| |||||  ||||||||||||||    
T  38789060 ggtggtggatcacaaacacggagagtctgacacttaatggagagatgttaatgtgttaagtgtaagttaaaatttcacattgtatgcaagagtagat 38788964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 207
Target Start/End: Complemental strand, 17474857 - 17474750
Alignment:
Q  104 tcttggtgatggatcacagacacgaagagtct----cttaatggagagatattaatgtgtcagtcgtgagttaaaatttgacattagatgcaagagtaga 199  Q
    |||||||| | |||||||| ||| ||||||||    |||| ||||||||| |||||||||||    ||||||||| ||| |||||  ||| |||||||||    
T  17474857 tcttggtggtcgatcacaggcacaaagagtctgacacttactggagagatgttaatgtgtcaaatttgagttaaagtttcacattttatgtaagagtaga 17474758  T
Q  200 tgttgaga 207  Q
    ||||||||    
T  17474757 tgttgaga 17474750  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 207
Target Start/End: Complemental strand, 17510341 - 17510234
Alignment:
Q  104 tcttggtgatggatcacagacacgaagagtct----cttaatggagagatattaatgtgtcagtcgtgagttaaaatttgacattagatgcaagagtaga 199  Q
    |||||||| | |||||||| ||| ||||||||    |||| ||||||||| |||||||||||    ||||||||| ||| |||||  ||| |||||||||    
T  17510341 tcttggtggtcgatcacaggcacaaagagtctgacacttactggagagatgttaatgtgtcaaatttgagttaaagtttcacattttatgtaagagtaga 17510242  T
Q  200 tgttgaga 207  Q
    ||||||||    
T  17510241 tgttgaga 17510234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 207
Target Start/End: Original strand, 17542873 - 17542980
Alignment:
Q  104 tcttggtgatggatcacagacacgaagagtct----cttaatggagagatattaatgtgtcagtcgtgagttaaaatttgacattagatgcaagagtaga 199  Q
    |||||||| | |||||||| ||| ||||||||    |||| ||||||||| |||||||||||    ||||||||| ||| |||||  ||| |||||||||    
T  17542873 tcttggtggtcgatcacaggcacaaagagtctgacacttactggagagatgttaatgtgtcaaatttgagttaaagtttcacattttatgtaagagtaga 17542972  T
Q  200 tgttgaga 207  Q
    ||||||||    
T  17542973 tgttgaga 17542980  T

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Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 207
Target Start/End: Original strand, 17578357 - 17578464
Alignment:
Q  104 tcttggtgatggatcacagacacgaagagtct----cttaatggagagatattaatgtgtcagtcgtgagttaaaatttgacattagatgcaagagtaga 199  Q
    |||||||| | |||||||| ||| ||||||||    |||| ||||||||| |||||||||||    ||||||||| ||| |||||  ||| |||||||||    
T  17578357 tcttggtggtcgatcacaggcacaaagagtctgacacttactggagagatgttaatgtgtcaaatttgagttaaagtttcacattttatgtaagagtaga 17578456  T
Q  200 tgttgaga 207  Q
    ||||||||    
T  17578457 tgttgaga 17578464  T

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Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 240
Target Start/End: Original strand, 43989682 - 43989786
Alignment:
Q  136 cttaatggagagatattaatgtgtcagtcgtgagttaaaatttgacattagatgcaagagtagatgttgagaaacatatgag-gagattatccatatacc 234  Q
    |||||| ||||||| |||||||||||   |||||||||||||| | |||  |||||| |||||||| |||||||||| | || ||||| || |||||||     
T  43989682 cttaattgagagatgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagtagatg-tgagaaacatttaagtgagatgattcatataca 43989780  T
Q  235 taatgc 240  Q
    ||||||    
T  43989781 taatgc 43989786  T

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Target: chr3 (Bit Score: 113; Significance: 3e-57; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 129 - 276
Target Start/End: Original strand, 431961 - 432109
Alignment:
Q  129 agagtctcttaatggagagatattaatgtgtcagtcgtgagttaaaatttgacattagatgcaagagtagatgttgagaaacatatgagg-agattatcc 227  Q
    ||||||||||||||||||||||||||||||||| | ||||||||||||| |||||| |||||||||||| |||||||||||||||||||| |||||||||    
T  431961 agagtctcttaatggagagatattaatgtgtcaattgtgagttaaaattcgacattggatgcaagagtatatgttgagaaacatatgaggaagattatcc 432060  T
Q  228 atatacctaatgctttaggactttgggtgaagaagtgatgtccatctca 276  Q
    ||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  432061 atataactaatgctttaggactttgggtgaagaagtgatgtcgatctca 432109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 136 - 252
Target Start/End: Complemental strand, 20935083 - 20934967
Alignment:
Q  136 cttaatggagagatattaatgtgtcagtcgtgagttaaaatttgacattagatgcaagagtagatgttgagaaacatatgag-gagattatccatatacc 234  Q
    |||||||||||||| ||||||||||||  |||||||||||||| | |||  |||||| |||||||| |||||||||| | || ||||| |  |||||||     
T  20935083 cttaatggagagatgttaatgtgtcaggtgtgagttaaaattttatattgtatgcaatagtagatg-tgagaaacatttaagtgagatgactcatataca 20934985  T
Q  235 taatgctttaggactttg 252  Q
    ||||||||| ||||||||    
T  20934984 taatgctttcggactttg 20934967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 214
Target Start/End: Complemental strand, 50332045 - 50331967
Alignment:
Q  136 cttaatggagagatattaatgtgtcagtcgtgagttaaaatttgacattagatgcaagagtagatgttgagaaacatat 214  Q
    |||||| ||||||| |||||||||||   ||||||||||||   |||||  |||||| |||||||||||||||||||||    
T  50332045 cttaatagagagatgttaatgtgtcaagtgtgagttaaaataacacattgaatgcaatagtagatgttgagaaacatat 50331967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 165 - 239
Target Start/End: Complemental strand, 32970516 - 32970441
Alignment:
Q  165 gtgagttaaaatttgacattagatgcaagagtagatgttgagaaacatatgag-gagattatccatatacctaatg 239  Q
    |||||| ||| ||| |||||||||||||||||||||| ||| ||| |||| || ||||| | ||||||||||||||    
T  32970516 gtgagtgaaagtttcacattagatgcaagagtagatgctgaaaaatatataagtgagatgacccatatacctaatg 32970441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 252
Target Start/End: Original strand, 17764121 - 17764237
Alignment:
Q  136 cttaatggagagatattaatgtgtcagtcgtgagttaaaatttgacattagatgcaagagtagatgttgagaaacatatgag-gagattatccatatacc 234  Q
    |||||||||||||| |||||||| ||   |||||||||||||  |||||  | || |||||| ||| |||| ||||||| || |||||||  |||||||     
T  17764121 cttaatggagagatgttaatgtgacaagtgtgagttaaaattccacattgtaagccagagtatatg-tgagcaacatataagtgagattactcatataca 17764219  T
Q  235 taatgctttaggactttg 252  Q
    |||||||||| |||||||    
T  17764220 taatgctttaagactttg 17764237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 252
Target Start/End: Original strand, 19065441 - 19065557
Alignment:
Q  136 cttaatggagagatattaatgtgtcagtcgtgagttaaaatttgacattagatgcaagagtagatgttgagaaacatatgag-gagattatccatatacc 234  Q
    |||||||||||||| |||||||| ||   |||||||||||||  |||||  | || |||||| ||| |||| ||||||| || |||||||  |||||||     
T  19065441 cttaatggagagatgttaatgtgacaagtgtgagttaaaattccacattgtaagccagagtatatg-tgagcaacatataagtgagattactcatataca 19065539  T
Q  235 taatgctttaggactttg 252  Q
    |||||||||| |||||||    
T  19065540 taatgctttaagactttg 19065557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 200
Target Start/End: Complemental strand, 42400469 - 42400405
Alignment:
Q  136 cttaatggagagatattaatgtgtcagtcgtgagttaaaatttgacattagatgcaagagtagat 200  Q
    |||||||||||||| |||||||||||   |||||||||||||| | |||  |||||| |||||||    
T  42400469 cttaatggagagatgttaatgtgtcacgtgtgagttaaaattttatattgtatgcaatagtagat 42400405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 104 - 276
Target Start/End: Complemental strand, 42757701 - 42757527
Alignment:
Q  104 tcttggtgatggatcacagacacgaagagtctcttaatggagagatattaatgtgtcagtcgtgagttaaaatttgacatt--agatgcaagagtagatg 201  Q
    |||||||| ||||||||||||||| ||||||||||||| ||||||| ||||||||||| | |||||| ||| ||| |||||  | |||||||||||||||    
T  42757701 tcttggtggtggatcacagacacggagagtctcttaatagagagatgttaatgtgtcaattgtgagtaaaagtttaacattggatatgcaagagtagatg 42757602  T
Q  202 ttgagaaacatatga-ggagattatccatatacctaatgctttaggactttgggtgaagaagtgatgtccatctca 276  Q
    |||| |||||||||| ||||||||| |||||||||||||  ||||||||||||||||| | |||||||| ||||||    
T  42757601 ttgaaaaacatatgagggagattat-catatacctaatgtcttaggactttgggtgaaaaggtgatgtcgatctca 42757527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 106 - 214
Target Start/End: Original strand, 13228658 - 13228770
Alignment:
Q  106 ttggtgatggatcacagacacgaagagtctc----ttaatggagagatattaatgtgtcagtcgtgagttaaaatttgacattagatgcaagagtagatg 201  Q
    |||||| |||||| ||||||| || ||||||    ||||||||||||| |||||||||||   ||||||||||||   |||||  |||||| ||||||||    
T  13228658 ttggtggtggatcgcagacacaaaaagtctcatacttaatggagagatgttaatgtgtcaagtgtgagttaaaataacacattgaatgcaatagtagatg 13228757  T
Q  202 ttgagaaacatat 214  Q
    |||||||||||||    
T  13228758 ttgagaaacatat 13228770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 214
Target Start/End: Original strand, 50158188 - 50158266
Alignment:
Q  136 cttaatggagagatattaatgtgtcagtcgtgagttaaaatttgacattagatgcaagagtagatgttgagaaacatat 214  Q
    |||||||||||||| |||||||||||    ||||||||| ||| |||||  ||||||||||| |||||||| |||||||    
T  50158188 cttaatggagagatgttaatgtgtcaagtatgagttaaagtttcacattttatgcaagagtatatgttgagcaacatat 50158266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 155
Target Start/End: Original strand, 35308158 - 35308209
Alignment:
Q  108 ggtgatggatcacagacacgaagagtct----cttaatggagagatattaat 155  Q
    |||| |||||||||||||||||||||||    ||||||||||||||||||||    
T  35308158 ggtggtggatcacagacacgaagagtctgacacttaatggagagatattaat 35308209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 202
Target Start/End: Complemental strand, 24183510 - 24183445
Alignment:
Q  137 ttaatggagagatattaatgtgtcagtcgtgagttaaaatttgacattagatgcaagagtagatgt 202  Q
    ||||||||||||| ||||||||| |   || ||||||||||| |||||  ||||||||||||||||    
T  24183510 ttaatggagagatgttaatgtgttaagtgtaagttaaaatttcacattgtatgcaagagtagatgt 24183445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 207
Target Start/End: Original strand, 39976693 - 39976730
Alignment:
Q  170 ttaaaatttgacattagatgcaagagtagatgttgaga 207  Q
    ||||| ||| ||||||||||||||||||||||||||||    
T  39976693 ttaaattttcacattagatgcaagagtagatgttgaga 39976730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 200
Target Start/End: Complemental strand, 28475720 - 28475656
Alignment:
Q  136 cttaatggagagatattaatgtgtcagtcgtgagttaaaatttgacattagatgcaagagtagat 200  Q
    |||||||||||||| ||||||||| |   || ||||||||||| |||||  ||||||||||||||    
T  28475720 cttaatggagagatgttaatgtgttaagtgtaagttaaaatttcacattgtatgcaagagtagat 28475656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 9e-39; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 107 - 276
Target Start/End: Original strand, 6466121 - 6466287
Alignment:
Q  107 tggtgatggatcacagacacgaagagtctcttaatggagagatattaatgtgtcagtcgtgagttaaaatttgacattagatgcaagagtagatgttgag 206  Q
    ||||| ||||||||||||||  |||||||||||||||||| || |||| ||||     |||| ||||||||||||||| |||||||||||| |||||||     
T  6466121 tggtggtggatcacagacacagagagtctcttaatggagaaatgttaacgtgtt----gtgaattaaaatttgacattggatgcaagagtaaatgttgaa 6466216  T
Q  207 aaacatatgag-gagattatccatatacctaatgctttaggactttgggtgaagaagtgatgtccatctca 276  Q
    |||||| |||| |||||||| |||||||| |||||||||||| ||||||||||||||||||||| ||||||    
T  6466217 aaacatttgagagagattattcatatacccaatgctttaggattttgggtgaagaagtgatgtcgatctca 6466287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 106 - 274
Target Start/End: Complemental strand, 3395573 - 3395400
Alignment:
Q  106 ttggtgatggatcacagacacgaagagtctc----ttaatggagagatattaatgtgtcagtcgtgagttaaaatttgacattagatgcaagagtagatg 201  Q
    |||||| |||||| ||||||| |||||||||    ||||||||||||| ||||||||||||  ||||||||||||   || ||  |||||| ||||||||    
T  3395573 ttggtggtggatcgcagacacaaagagtctcatacttaatggagagatgttaatgtgtcaggtgtgagttaaaataacactttgaatgcaatagtagatg 3395474  T
Q  202 ttgagaaacatatgag-gagattatccatatacctaatgctttaggactttgggtgaagaagtgatgtccatct 274  Q
    ||||||||||||| || ||||| |  |||||| ||||||  ||| || |||||||||||  |||||||| ||||    
T  3395473 ttgagaaacatataagtgagatgactcatatatctaatgtcttaagattttgggtgaagttgtgatgtcaatct 3395400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 151 - 214
Target Start/End: Complemental strand, 36727705 - 36727642
Alignment:
Q  151 ttaatgtgtcagtcgtgagttaaaatttgacattagatgcaagagtagatgttgagaaacatat 214  Q
    ||||||||||| | |||| ||||||||| ||||||||||||| |||||||||| ||||||||||    
T  36727705 ttaatgtgtcaattgtgacttaaaatttcacattagatgcaaaagtagatgttaagaaacatat 36727642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 274
Target Start/End: Original strand, 36720068 - 36720205
Alignment:
Q  138 taatggagagatattaatgtgtcagtcgtgagttaaaatttgacattagatgcaagagtagatgttgagaaacatatgag-gagattatccatataccta 236  Q
    ||||| |||||| |||||||||||   |||||||||||||  ||| |   ||||| | || |||||||| ||||||| || ||||| |||||||||||||    
T  36720068 taatgaagagatgttaatgtgtcaagtgtgagttaaaattctacaatgtgtgcaataatatatgttgagcaacatataagtgagatgatccatataccta 36720167  T
Q  237 atgctttaggactttgggtgaagaagtgatgtccatct 274  Q
    |||  | | ||||||||||||||| |||||||| ||||    
T  36720168 atgtctgaagactttgggtgaagatgtgatgtcaatct 36720205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 130 - 177
Target Start/End: Complemental strand, 30637908 - 30637861
Alignment:
Q  130 gagtctcttaatggagagatattaatgtgtcagtcgtgagttaaaatt 177  Q
    ||||||||||||||||  |||||||||||||| | |||||||||||||    
T  30637908 gagtctcttaatggagttatattaatgtgtcaattgtgagttaaaatt 30637861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 200
Target Start/End: Original strand, 19040697 - 19040761
Alignment:
Q  136 cttaatggagagatattaatgtgtcagtcgtgagttaaaatttgacattagatgcaagagtagat 200  Q
    |||||||||||||| |||||||||||   |||||||||||||| | |||  |||||| |||||||    
T  19040697 cttaatggagagatgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagtagat 19040761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1315 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold1315
Description:

Target: scaffold1315; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 115 - 276
Target Start/End: Original strand, 489 - 652
Alignment:
Q  115 gatcacagacacgaagagtctcttaatggagagatattaatgtgtcagtcgtgagttaaaatttgacattagat--gcaagagtagatgttgagaaacat 212  Q
    ||||| ||||||| ||||||||||||| ||||||| ||||||||||||| || ||| ||| ||  ||||| |||  ||||||||||||||||||||||||    
T  489 gatcatagacacggagagtctcttaatagagagatgttaatgtgtcagttgtaagtaaaagttcaacattggatatgcaagagtagatgttgagaaacat 588  T
Q  213 atgagg-agattatccatatacctaatgctttaggactttgggtgaagaagtgatgtccatctca 276  Q
    |||||| |||||||| ||||||||||||  ||||||||||||||||| |||||||||| ||||||    
T  589 atgagggagattatc-atatacctaatgtcttaggactttgggtgaaaaagtgatgtcgatctca 652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1293 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold1293
Description:

Target: scaffold1293; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 115 - 276
Target Start/End: Complemental strand, 1582 - 1419
Alignment:
Q  115 gatcacagacacgaagagtctcttaatggagagatattaatgtgtcagtcgtgagttaaaatttgacattagat--gcaagagtagatgttgagaaacat 212  Q
    ||||| ||||||| ||||||||||||| ||||||| ||||||||||||| || ||| ||| ||  ||||| |||  ||||||||||||||||||||||||    
T  1582 gatcatagacacggagagtctcttaatagagagatgttaatgtgtcagttgtaagtaaaagttcaacattggatatgcaagagtagatgttgagaaacat 1483  T
Q  213 atgagg-agattatccatatacctaatgctttaggactttgggtgaagaagtgatgtccatctca 276  Q
    |||||| |||||||| ||||||||||||  ||||||||||||||||| |||||||||| ||||||    
T  1482 atgagggagattatc-atatacctaatgtcttaggactttgggtgaaaaagtgatgtcgatctca 1419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 5e-34; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 113 - 276
Target Start/End: Complemental strand, 18953464 - 18953297
Alignment:
Q  113 tggatcacagacacgaagagtctcttaatggagaga---tattaatgtgtcagtcgtgagttaaaatttgacattagatgcaagagtagatgttgagaaa 209  Q
    ||||||||||||||| ||| ||| |||||||||| |   | |||||||||||   |||| ||||||||||||||| |||||||||||||||||||| |||    
T  18953464 tggatcacagacacggagattctattaatggagaaaggttgttaatgtgtcaactgtgaattaaaatttgacattggatgcaagagtagatgttgaaaaa 18953365  T
Q  210 catatga-ggagattatccatatacctaatgctttaggactttgggtgaagaagtgatgtccatctca 276  Q
    ||| ||| ||||||||| || | || |||||||||||||||||||||||||||||||| || ||||||    
T  18953364 catttgagggagattattcaaaaacttaatgctttaggactttgggtgaagaagtgatatcgatctca 18953297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 213
Target Start/End: Complemental strand, 10901529 - 10901452
Alignment:
Q  136 cttaatggagagatattaatgtgtcagtcgtgagttaaaatttgacattagatgcaagagtagatgttgagaaacata 213  Q
    |||||||||||||| ||||||| |||   ||||||||||||   |||||  |||||| ||||||||||||| ||||||    
T  10901529 cttaatggagagatgttaatgtatcaaatgtgagttaaaataacacattgaatgcaatagtagatgttgagtaacata 10901452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 207
Target Start/End: Complemental strand, 21587082 - 21587045
Alignment:
Q  170 ttaaaatttgacattagatgcaagagtagatgttgaga 207  Q
    ||||| ||| ||||||||||||||||||||||||||||    
T  21587082 ttaaattttcacattagatgcaagagtagatgttgaga 21587045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 136 - 276
Target Start/End: Complemental strand, 9012801 - 9012660
Alignment:
Q  136 cttaatggagagatattaatgtgtcagtcgtgagttaaaatttgacattagatgcaagagtagatgttgagaaacatatgag-gagattatccatatacc 234  Q
    ||||||||||| ||||||||||||||   || ||||||||||| ||| |  || ||||||||||||||||| ||||||| || ||| | | || |||||     
T  9012801 cttaatggagacatattaatgtgtcaagtgttagttaaaatttcacaatgaattcaagagtagatgttgagcaacatataagtgagctgacccttataca 9012702  T
Q  235 taatgctttaggactttgggtgaagaagtgatgtccatctca 276  Q
    |||||| |||||||||||| ||| || ||||| || ||||||    
T  9012701 taatgccttaggactttggatgacgatgtgatatcaatctca 9012660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 140 - 276
Target Start/End: Complemental strand, 38016015 - 38015878
Alignment:
Q  140 atggagagatattaatgtgtcagtcgtgagttaaaatttgacattagatgcaagagtagatgttgagaaacatatgag-gagattatccatatacctaat 238  Q
    |||||||||| |||||||||||   ||||||||||||   |||||  |||||| ||||||||||||| ||||||| || ||||| |  |||||| |||||    
T  38016015 atggagagatgttaatgtgtcaagtgtgagttaaaataacacattgaatgcaatagtagatgttgagcaacatataagtgagatgactcatatatctaat 38015916  T
Q  239 gctttaggactttgggtgaagaagtgatgtccatctca 276  Q
    |  ||| || |||||||||||  |||||||| ||||||    
T  38015915 gacttaagattttgggtgaagttgtgatgtcaatctca 38015878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 276
Target Start/End: Original strand, 24539672 - 24539721
Alignment:
Q  227 catatacctaatgctttaggactttgggtgaagaagtgatgtccatctca 276  Q
    |||||||||||| ||||| ||||||||||||||| ||| |||| ||||||    
T  24539672 catatacctaatactttaagactttgggtgaagatgtgttgtcaatctca 24539721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 151 - 205
Target Start/End: Complemental strand, 31737287 - 31737233
Alignment:
Q  151 ttaatgtgtcagtcgtgagttaaaatttgacattagatgcaagagtagatgttga 205  Q
    ||||||||||| | |||||||||||||| ||||| ||||||||||||||||||||    
T  31737287 ttaatgtgtcaattgtgagttaaaatttcacattggatgcaagagtagatgttga 31737233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 214
Target Start/End: Original strand, 1599682 - 1599760
Alignment:
Q  136 cttaatggagagatattaatgtgtcagtcgtgagttaaaatttgacattagatgcaagagtagatgttgagaaacatat 214  Q
    |||||| ||||||| |||||||||||   ||||||||||||   |||||  |||||| |||||||||||||||||||||    
T  1599682 cttaatagagagatgttaatgtgtcaagtgtgagttaaaataacacattgaatgcaatagtagatgttgagaaacatat 1599760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 200
Target Start/End: Complemental strand, 7428571 - 7428507
Alignment:
Q  136 cttaatggagagatattaatgtgtcagtcgtgagttaaaatttgacattagatgcaagagtagat 200  Q
    |||||||||||||| |||||||||||   |||||||||||||| | |||  |||||| |||||||    
T  7428571 cttaatggagagatgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagtagat 7428507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 113 - 214
Target Start/End: Complemental strand, 43387213 - 43387108
Alignment:
Q  113 tggatcacagacacgaagagtctc----ttaatggagagatattaatgtgtcagtcgtgagttaaaatttgacattagatgcaagagtagatgttgagaa 208  Q
    |||||| |||||||| ||||||||    ||||  ||||||| |||||||||||   |||||||||||||  |||||  |||||| |||||||||||||||    
T  43387213 tggatcgcagacacggagagtctcgtacttaacagagagatgttaatgtgtcaagtgtgagttaaaattacacattgaatgcaatagtagatgttgagaa 43387114  T
Q  209 acatat 214  Q
    ||||||    
T  43387113 acatat 43387108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 206
Target Start/End: Complemental strand, 22636405 - 22636335
Alignment:
Q  136 cttaatggagagatattaatgtgtcagtcgtgagttaaaatttgacattagatgcaagagtagatgttgag 206  Q
    |||||||||||||| ||||| | |||   ||||||||||||||||| ||  ||||||||||||||||||||    
T  22636405 cttaatggagagatgttaatttttcaagtgtgagttaaaatttgactttgaatgcaagagtagatgttgag 22636335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 252
Target Start/End: Complemental strand, 20306819 - 20306703
Alignment:
Q  136 cttaatggagagatattaatgtgtcagtcgtgagttaaaatttgacattagatgcaagagtagatgttgagaaacatatgag-gagattatccatatacc 234  Q
    |||||||||||||| |||||||||||   |||||||||||||| | |||  |||||| |||||||  |||||||||| | || ||||| |  |||||||     
T  20306819 cttaatggagagatgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagtagat-atgagaaacatttaagtgagatgactcatataca 20306721  T
Q  235 taatgctttaggactttg 252  Q
    |||||||||  |||||||    
T  20306720 taatgctttcagactttg 20306703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 198
Target Start/End: Original strand, 16851931 - 16852024
Alignment:
Q  108 ggtgatggatcacagacacgaagagtctc---ttaatggagagatattaatgtg-tcagtcgtgagttaaaatttgacattagatgcaagagtag 198  Q
    |||| ||||||||  |||||||||||||    ||||||||||||| |||||||| ||||| || ||||||||||| |||||  ||||||||||||    
T  16851931 ggtggtggatcacgaacacgaagagtctgactttaatggagagatgttaatgtgttcagt-gtaagttaaaatttcacattgtatgcaagagtag 16852024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 200
Target Start/End: Original strand, 40946519 - 40946583
Alignment:
Q  136 cttaatggagagatattaatgtgtcagtcgtgagttaaaatttgacattagatgcaagagtagat 200  Q
    |||||||||||||| |||||||||||   |||||||||||||| | |||  |||||| |||||||    
T  40946519 cttaatggagagatgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagtagat 40946583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 209
Target Start/End: Original strand, 19051 - 19092
Alignment:
Q  168 agttaaaatttgacattagatgcaagagtagatgttgagaaa 209  Q
    ||||||| ||||||||||||||| |||||||||| |||||||    
T  19051 agttaaattttgacattagatgctagagtagatggtgagaaa 19092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1750 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1750
Description:

Target: scaffold1750; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 212
Target Start/End: Complemental strand, 370 - 295
Alignment:
Q  136 cttaatggagagatattaatgtgtcagtcgtgagttaaaatttgacattagatgcaagagtagatgttgagaaacat 212  Q
    |||||||||||||| |||||||| ||   |||||||||||||| | |||  |||||| |||||||| ||||||||||    
T  370 cttaatggagagatgttaatgtggcaagtgtgagttaaaattttatattgtatgcaatagtagatg-tgagaaacat 295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1345 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1345
Description:

Target: scaffold1345; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 212
Target Start/End: Original strand, 1848 - 1923
Alignment:
Q  136 cttaatggagagatattaatgtgtcagtcgtgagttaaaatttgacattagatgcaagagtagatgttgagaaacat 212  Q
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T  1848 cttaattgagagatgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagtagatg-tgagaaacat 1923  T

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