View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8431_low_19 (Length: 267)
Name: NF8431_low_19
Description: NF8431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8431_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 253
Target Start/End: Original strand, 55986971 - 55987206
Alignment:
| Q |
18 |
acaacaacattatcaacaaaaaggattggaacacatatcgttagacccttttcatggaagtttatgaatccttatttaaatactaaggaccattgtataa |
117 |
Q |
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| T |
55986971 |
acaacaacattatcaacaaaaaggattggaacacatatcgttagacccttttcatggaagtttatgaatccttatttaaatactaaggaccattttataa |
55987070 |
T |
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| Q |
118 |
agaataaaaagtaaaatacctaacccattatcaaactattgcatgttctgtattcacatagattccagagaaaaacaagatgagtcggaacatccagtca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55987071 |
agaataaaaagtaaaatacctaacccattatcaaactattgcatgttctgtattcacatagattccagagaaaaacaagatgagtcggaacatccagtca |
55987170 |
T |
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| Q |
218 |
tttgtgacaatactctcatcaaacatccaagttgat |
253 |
Q |
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||| ||||||| |||||||||||||||||||||||| |
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| T |
55987171 |
tttatgacaattctctcatcaaacatccaagttgat |
55987206 |
T |
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