View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8431_low_25 (Length: 217)

Name: NF8431_low_25
Description: NF8431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8431_low_25
NF8431_low_25
[»] chr1 (4 HSPs)
chr1 (17-207)||(7779461-7779650)
chr1 (25-133)||(6936374-6936482)
chr1 (37-95)||(22794090-22794148)
chr1 (48-92)||(48450602-48450646)
[»] chr5 (2 HSPs)
chr5 (25-92)||(24906316-24906383)
chr5 (37-81)||(41558709-41558753)
[»] scaffold0024 (1 HSPs)
scaffold0024 (33-95)||(68254-68316)
[»] chr3 (3 HSPs)
chr3 (48-96)||(25326426-25326474)
chr3 (40-81)||(11093562-11093603)
chr3 (49-85)||(55212964-55213000)
[»] scaffold0722 (1 HSPs)
scaffold0722 (49-92)||(7047-7090)
[»] chr8 (2 HSPs)
chr8 (15-94)||(25192360-25192439)
chr8 (19-81)||(3677757-3677819)
[»] chr7 (3 HSPs)
chr7 (49-92)||(11061091-11061134)
chr7 (57-96)||(13427585-13427624)
chr7 (56-94)||(4024035-4024073)
[»] chr6 (3 HSPs)
chr6 (49-95)||(7625123-7625169)
chr6 (54-92)||(18252766-18252804)
chr6 (37-78)||(34431278-34431319)
[»] chr4 (1 HSPs)
chr4 (56-92)||(37203272-37203308)
[»] chr2 (2 HSPs)
chr2 (40-92)||(18255995-18256047)
chr2 (56-92)||(30335425-30335461)


Alignment Details
Target: chr1 (Bit Score: 151; Significance: 5e-80; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 17 - 207
Target Start/End: Complemental strand, 7779650 - 7779461
Alignment:
Q  17 acatcaggcacgatacgaatactgacacattaacacagataataattttaaaaaatgacataatttagtataattatagacatcatatctgtgtcggaca 116  Q
    ||||||| ||||| ||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  | |    
T  7779650 acatcagacacgacacgaacactgacacattaacacaaataataattttaaaaa-tgacataatttagtataattatagacatcatatctgtgtcaaata 7779552  T
Q  117 tcgacacgtatccgacatgaagagttaggacacacctaattcaagaatgtccctacctcataggttatatgttataaaatcaccaccaaac 207  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7779551 tcgacacgtatccgacatgaggagttaggacacacctaattcaagaatgtccctacctcataggttatatgttataaaatcaccaccaaac 7779461  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 133
Target Start/End: Complemental strand, 6936482 - 6936374
Alignment:
Q  25 cacgatacgaatactgacacattaacacagataataattttaaaaaatgacataatttagtataattatagacatcatatctgtgtcggacatcgacacg 124  Q
    ||||| ||||| ||| |||||| ||||| ||||||||| | | |||||||||||||| ||| |||| ||||   || | ||||||||||||| |||| |     
T  6936482 cacgacacgaacactaacacatcaacacggataataatctgagaaaatgacataattaagtgtaatcataggtgtcgtgtctgtgtcggacaccgacgca 6936383  T
Q  125 tatccgaca 133  Q
    |||||||||    
T  6936382 tatccgaca 6936374  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 95
Target Start/End: Complemental strand, 22794148 - 22794090
Alignment:
Q  37 actgacacattaacacagataataattttaaaaaatgacataatttagtataattatag 95  Q
    |||||||| | ||||| ||||||||||| |||||||||||||||  ||| |||||||||    
T  22794148 actgacacgtcaacacggataataatttgaaaaaatgacataatacagtgtaattatag 22794090  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 92
Target Start/End: Complemental strand, 48450646 - 48450602
Alignment:
Q  48 aacacagataataattttaaaaaatgacataatttagtataatta 92  Q
    ||||||| ||||||||| ||||||| |||||||||||| ||||||    
T  48450646 aacacagctaataatttgaaaaaataacataatttagtgtaatta 48450602  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 92
Target Start/End: Complemental strand, 24906383 - 24906316
Alignment:
Q  25 cacgatacgaatactgacacattaacacagataataattttaaaaaatgacataatttagtataatta 92  Q
    ||||| ||||| ||||||||   ||||||||||||||||| |||||||||||||||| ||| ||||||    
T  24906383 cacgacacgaacactgacacgccaacacagataataatttgaaaaaatgacataattcagtgtaatta 24906316  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 41558753 - 41558709
Alignment:
Q  37 actgacacattaacacagataataattttaaaaaatgacataatt 81  Q
    ||||||||||| ||||| |||||||||| | ||||||||||||||    
T  41558753 actgacacattgacacaaataataatttgagaaaatgacataatt 41558709  T

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Target: scaffold0024 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 33 - 95
Target Start/End: Complemental strand, 68316 - 68254
Alignment:
Q  33 gaatactgacacattaacacagataataattttaaaaaatgacataatttagtataattatag 95  Q
    |||||||||||||||| ||| | ||||||||| | ||||| | ||||||||||||||||||||    
T  68316 gaatactgacacattagcaccgttaataatttgagaaaatcatataatttagtataattatag 68254  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 96
Target Start/End: Original strand, 25326426 - 25326474
Alignment:
Q  48 aacacagataataattttaaaaaatgacataatttagtataattataga 96  Q
    ||||||||||||||||| ||||||| | |||||||||| ||||||||||    
T  25326426 aacacagataataatttaaaaaaataatataatttagtgtaattataga 25326474  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 40 - 81
Target Start/End: Original strand, 11093562 - 11093603
Alignment:
Q  40 gacacattaacacagataataattttaaaaaatgacataatt 81  Q
    |||||||| |||| ||||||||||| ||||||||||||||||    
T  11093562 gacacatttacactgataataatttgaaaaaatgacataatt 11093603  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 85
Target Start/End: Original strand, 55212964 - 55213000
Alignment:
Q  49 acacagataataattttaaaaaatgacataatttagt 85  Q
    |||||| ||||||||||||||||| ||||||||||||    
T  55212964 acacagttaataattttaaaaaatcacataatttagt 55213000  T

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Target: scaffold0722 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0722
Description:

Target: scaffold0722; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 92
Target Start/End: Complemental strand, 7090 - 7047
Alignment:
Q  49 acacagataataattttaaaaaatgacataatttagtataatta 92  Q
    |||||| ||||||||| ||||||| |||||||||||||||||||    
T  7090 acacagctaataatttgaaaaaattacataatttagtataatta 7047  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 94
Target Start/End: Complemental strand, 25192439 - 25192360
Alignment:
Q  15 ggacatcaggcacgatacgaatactgacacattaacacagataataattttaaaaaatgacataatttagtataattata 94  Q
    ||||||| | ||||||||| | ||||||||    |||||| ||||||||| ||||| |||||||||| ||||||||||||    
T  25192439 ggacatcggacacgatacggacactgacacgccgacacagctaataatttgaaaaagtgacataattcagtataattata 25192360  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 3677757 - 3677819
Alignment:
Q  19 atcaggcacgatacgaatactgacacattaacacagataataattttaaaaaatgacataatt 81  Q
    ||||| ||||| ||| ||||||||||||  |||||  ||||||||||||||||| ||||||||    
T  3677757 atcagacacgacacggatactgacacatcgacacaattaataattttaaaaaatcacataatt 3677819  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 92
Target Start/End: Complemental strand, 11061134 - 11061091
Alignment:
Q  49 acacagataataattttaaaaaatgacataatttagtataatta 92  Q
    |||||| ||||||||| ||||||| |||||||||||||||||||    
T  11061134 acacagctaataatttgaaaaaatcacataatttagtataatta 11061091  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 96
Target Start/End: Original strand, 13427585 - 13427624
Alignment:
Q  57 aataattttaaaaaatgacataatttagtataattataga 96  Q
    |||||||| ||||||||||||||||||||||||| |||||    
T  13427585 aataatttgaaaaaatgacataatttagtataatcataga 13427624  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 94
Target Start/End: Original strand, 4024035 - 4024073
Alignment:
Q  56 taataattttaaaaaatgacataatttagtataattata 94  Q
    ||||||||| |||||||||||||||||| ||||||||||    
T  4024035 taataatttaaaaaaatgacataatttaatataattata 4024073  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 95
Target Start/End: Original strand, 7625123 - 7625169
Alignment:
Q  49 acacagataataattttaaaaaatgacataatttagtataattatag 95  Q
    |||| ||||||||||| | ||||||| ||||||||||||||||||||    
T  7625123 acacggataataatttgagaaaatgatataatttagtataattatag 7625169  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 92
Target Start/End: Complemental strand, 18252804 - 18252766
Alignment:
Q  54 gataataattttaaaaaatgacataatttagtataatta 92  Q
    ||||||||||| |||||||||||||||||||| ||||||    
T  18252804 gataataatttaaaaaaatgacataatttagtgtaatta 18252766  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 37 - 78
Target Start/End: Complemental strand, 34431319 - 34431278
Alignment:
Q  37 actgacacattaacacagataataattttaaaaaatgacata 78  Q
    |||||||| ||||||  |||||||||||||||||||||||||    
T  34431319 actgacacgttaacatcgataataattttaaaaaatgacata 34431278  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 92
Target Start/End: Original strand, 37203272 - 37203308
Alignment:
Q  56 taataattttaaaaaatgacataatttagtataatta 92  Q
    ||||||||| |||||||||||||||||||| ||||||    
T  37203272 taataatttgaaaaaatgacataatttagtgtaatta 37203308  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 92
Target Start/End: Complemental strand, 18256047 - 18255995
Alignment:
Q  40 gacacattaacacagataataattttaaaaaatgacataatttagtataatta 92  Q
    |||||| | |||||||||||||||| ||||||| |||||||||| | ||||||    
T  18256047 gacacactgacacagataataatttaaaaaaatcacataatttaatgtaatta 18255995  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 92
Target Start/End: Original strand, 30335425 - 30335461
Alignment:
Q  56 taataattttaaaaaatgacataatttagtataatta 92  Q
    ||||||||| |||||||||||||||||||| ||||||    
T  30335425 taataatttgaaaaaatgacataatttagtgtaatta 30335461  T

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