View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8431_low_3 (Length: 619)
Name: NF8431_low_3
Description: NF8431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8431_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 284; Significance: 1e-159; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 195 - 586
Target Start/End: Complemental strand, 26255627 - 26255238
Alignment:
| Q |
195 |
atcttgtatgatcaaggatcagttgggatattgatcttgagataaacttgagtgagagctattttctctctttttagatgctttaacattatagatgagc |
294 |
Q |
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| T |
26255627 |
atcttgtatgatcaaggatcagttgggatattgatcttgagataaacttgagtgagagctattttctctctttttagatgcttttacattatagatgagt |
26255528 |
T |
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| Q |
295 |
gagttcttatttaatggggtaaccagaatatataaggatcacgggagaaaagagatttctcaacgagtttactagaagaataatttaattcatcacaaat |
394 |
Q |
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| T |
26255527 |
gagttcttattttatggggtaactagaatatataaggatcaccggagaaa-gagatctctcaacgagtttactagaagaataattcagttcatcacgaat |
26255429 |
T |
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| Q |
395 |
tgttctaaatcacaacacaacacggttaggcatgacaacaaaattcgtacctgcggattccggtctgaactaaatctgatttaatgggttttccccgctt |
494 |
Q |
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| T |
26255428 |
tattctaaatcacaacacaacatggttagatatgacagcaaaatccgtacctgcggataccggtctaaactaaatctaatttaatggtttttccccactt |
26255329 |
T |
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| Q |
495 |
tgactaagtgagggcatgagtttgaattttctcaatttcaaaacacaagtactagtaaaaggggatataagttcccactccgaactcataac |
586 |
Q |
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| T |
26255328 |
tgattaagtgagggcatgagtttgaattttctcaatttcaaaacacaagtacgggt-aaaggggatataagttcccactccgaactcataac |
26255238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 60 - 196
Target Start/End: Complemental strand, 26255790 - 26255654
Alignment:
| Q |
60 |
catgtcaacaattaaagtgttcaatttctgccgttggattggatctatgggtgactttatttaaataagtaagatataaataaaattatatcagttataa |
159 |
Q |
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| T |
26255790 |
catgtcaacaattaaagtgttcaatttctgccgttggattggatctatgggtgactttatttaaataagtaagatataaataaaattatatcagttataa |
26255691 |
T |
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| Q |
160 |
aatactattacacttatttttcaatatatgaaataat |
196 |
Q |
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| T |
26255690 |
aatactattacacttatttttcaatatatgaaataat |
26255654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 473 - 535
Target Start/End: Original strand, 37309706 - 37309769
Alignment:
| Q |
473 |
atttaatgggttttccccgctttgactaagtgagggcatgagtttga-attttctcaatttcaa |
535 |
Q |
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| T |
37309706 |
atttgatgggtttttcccgctttgactaagtttgggtatgagtttgagtttttctcaatttcaa |
37309769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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