View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8431_low_6 (Length: 484)
Name: NF8431_low_6
Description: NF8431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8431_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 144 - 448
Target Start/End: Complemental strand, 31714241 - 31713937
Alignment:
| Q |
144 |
tcattgaataagttgttaaatttaggctcacgcgctgcataatcccatattaacatcccatgtgtagttccaaatgttgaaggatcatcggtttttaacc |
243 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
31714241 |
tcattgaataagttgttaaatttaggctcacgcgccgcataatcccacatcgacatcccatgtgtagttccaaatgttgaaggatcatcagtttttaacc |
31714142 |
T |
|
| Q |
244 |
aactggacatttcatgccacgggtttgccaaaattggatgtagtatggcttgcaaaaatggtgtcacactcatggggtgatccttaagcaacagtataga |
343 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31714141 |
aaccggacatttcatgccacgggtttgccaaaattggatgtagtacggcttgcaaaaatggtgtcacactcatggggtgatccttaagcaacagtataga |
31714042 |
T |
|
| Q |
344 |
ttcatcggttagcatatactcgatttctagctcattctcagtaacattgtgttcatagaagaagccagattgagtcatgattcgcattaagcgatagatg |
443 |
Q |
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|||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
31714041 |
ttcatcggttagaatataatcgatttctagctcattctcagtaacatcgtgttcatagaagaagccagattgagtcatgatttgcattaagcgatagatg |
31713942 |
T |
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| Q |
444 |
cagga |
448 |
Q |
| |
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||||| |
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| T |
31713941 |
cagga |
31713937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 1 - 438
Target Start/End: Complemental strand, 31702952 - 31702515
Alignment:
| Q |
1 |
tttgtgggaatgatttggcaagagcctttgccatggtccctgtgcctcctccaacatcaaccaatgattccaatccattgaacatttcaccacacttctc |
100 |
Q |
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|||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||| | | | | |||||||| |
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| T |
31702952 |
tttgtgggaatgatttagcaagggcctttgccatggtccctgtgccacctccaacatcaaccaatgactccaacccattgaatactcccctgcacttctc |
31702853 |
T |
|
| Q |
101 |
aatcaccacacttgtgaccaatcgagcatcactcaccattgcatcattgaataagttgttaaatttaggctcacgcgctgcataatcccatattaacatc |
200 |
Q |
| |
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||||| || | | || || ||||||| |||||| |||| | ||||||||||||||| ||||||| | |||| ||| |||| ||||||| |||||| |
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| T |
31702852 |
aatcaacaaattggtcactaatcgagtatcacttgccatggactcattgaataagttgctaaatttggagtcacacgcaacatattcccataacaacatc |
31702753 |
T |
|
| Q |
201 |
ccatgtgtagttccaaatgttgaaggatcatcggtttttaaccaactggacatttcatgccacgggtttgccaaaattggatgtagtatggcttgcaaaa |
300 |
Q |
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| ||||| ||| ||||||||| ||||||||| ||||||||||| | || | || ||||||||| |||| ||||| ||||| || || || || | || |
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| T |
31702752 |
ctgtgtgtcgtttcaaatgttgtaggatcatcattttttaaccaagtagagaattgatgccacggatttgtcaaaactggatcgagcatcgcgtgtacaa |
31702653 |
T |
|
| Q |
301 |
atggtgtcacactcatggggtgatccttaagcaacagtatagattcatcggttagcatatactcgatttctagctcattctcagtaacattgtgttcata |
400 |
Q |
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|||||||||| ||||| || | |||||||| || | ||| ||| ||||||||| ||||||||||||||||||||||||||| |||||||| | || | | |
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| T |
31702652 |
atggtgtcacgctcatcggattgtccttaagtaataatatcgatgcatcggttaacatatactcgatttctagctcattctcggtaacattatattgaga |
31702553 |
T |
|
| Q |
401 |
gaagaagccagattgagtcatgattcgcattaagcgat |
438 |
Q |
| |
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|||||| | ||| |||||||| |||||||| ||||||| |
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| T |
31702552 |
gaagaaactagaatgagtcattattcgcatcaagcgat |
31702515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 2 - 113
Target Start/End: Complemental strand, 31714354 - 31714243
Alignment:
| Q |
2 |
ttgtgggaatgatttggcaagagcctttgccatggtccctgtgcctcctccaacatcaaccaatgattccaatccattgaacatttcaccacacttctca |
101 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
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| T |
31714354 |
ttgtgggaatgatttggcaagagcctttgccatggtccctgtgcctcctccaacatcaaccaatgattccaatccattgaacactccaccacacttctca |
31714255 |
T |
|
| Q |
102 |
atcaccacactt |
113 |
Q |
| |
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|||||||||||| |
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|
| T |
31714254 |
atcaccacactt |
31714243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 1 - 445
Target Start/End: Complemental strand, 31734792 - 31734348
Alignment:
| Q |
1 |
tttgtgggaatgatttggcaagagcctttgccatggtccctgtgcctcctccaacatcaaccaatgattccaatccattgaacatttcaccacacttctc |
100 |
Q |
| |
|
||||||||||||||||||||| || ||||||||| |||||||| ||||||||||||||||||||||| || ||| ||||||||| | | |||||||| |
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| T |
31734792 |
tttgtgggaatgatttggcaaaagtctttgccatagtccctgttcctcctccaacatcaaccaatgactcaaattcattgaacactcccttgcacttctc |
31734693 |
T |
|
| Q |
101 |
aatcaccacacttgtgaccaatcgagcatcactcaccattgcatcattgaataagttgttaaatttaggctcacgcgctgcataatcccatattaacatc |
200 |
Q |
| |
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|| || || | | | || ||| |||||||| | |||||| ||||| ||||||||||||||||| | |||| ||| ||||| ||||||| |||||| |
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| T |
31734692 |
aaccaacaaattggaaactaattgagcatcatttgccattgactcattaaataagttgttaaatttggagtcacacgcagcatattcccataacaacatc |
31734593 |
T |
|
| Q |
201 |
ccatgtgtagttccaaatgttgaaggatcatcggtttttaaccaactggacatttcatgccacgggtttgccaaaattggatgtagtatggcttgcaaaa |
300 |
Q |
| |
|
|| ||||| ||| |||||| || || |||||| |||||||||| | || | || |||||| || || || || ||||| || || || | || | |
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| T |
31734592 |
ccgtgtgtcgtttcaaatgatgtagtatcatcattttttaaccacatagagaattgatgccaaggattcatcataactggatcgagcatcgcgtacacga |
31734493 |
T |
|
| Q |
301 |
atggtgtcacactcatggggtgatccttaagcaacagtatagattcatcggttagcatatactcgatttctagctcattctcagtaacattgtgttcata |
400 |
Q |
| |
|
|||||||||||||||| || | ||||||||| || | | ||||| |||| |||| ||||||||| |||||| |||||||| | | || ||| |||| | | |
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| T |
31734492 |
atggtgtcacactcattggattatccttaagtaataatctagatgcatcagttaacatatactcaatttctggctcattcgccgcaatattttgttgaga |
31734393 |
T |
|
| Q |
401 |
gaagaagccagattgagtcatgattcgcattaagcgatagatgca |
445 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||||| |||||| |
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| T |
31734392 |
gaagaagccagagtgagtcatgattcgcatcaagcgatggatgca |
31734348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 31684413 - 31684330
Alignment:
| Q |
1 |
tttgtgggaatgatttggcaagagcctttgccatggtccctgtgcctcctccaacatcaaccaatgattccaatccattgaaca |
84 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| || | | ||||||||| |
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| T |
31684413 |
tttgtgggaatgatttggcaagagtttttgccatggtccctgtacctcctccaacatcaaccaatgactcgacttcattgaaca |
31684330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 31711386 - 31711303
Alignment:
| Q |
1 |
tttgtgggaatgatttggcaagagcctttgccatggtccctgtgcctcctccaacatcaaccaatgattccaatccattgaaca |
84 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||||||| || ||||||||||||||||||||||| || | | ||||||||| |
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|
| T |
31711386 |
tttgtgggaatgatttgacaagagtctttgccatggtccccgtacctcctccaacatcaaccaatgactcaacttcattgaaca |
31711303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 301 - 438
Target Start/End: Complemental strand, 31711086 - 31710949
Alignment:
| Q |
301 |
atggtgtcacactcatggggtgatccttaagcaacagtatagattcatcggttagcatatactcgatttctagctcattctcagtaacattgtgttcata |
400 |
Q |
| |
|
|||||| ||||||||| || | ||||| || || ||| ||||| |||| |||| ||||||||| ||||||||||||||| | |||| || | || | | |
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|
| T |
31711086 |
atggtgccacactcattggattgtccttgagtaatagtttagatgcatcagttaacatatactcaatttctagctcattccctataacgtttttttgaga |
31710987 |
T |
|
| Q |
401 |
gaagaagccagattgagtcatgattcgcattaagcgat |
438 |
Q |
| |
|
||||||||| || ||||||||||||||||| ||||||| |
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| T |
31710986 |
gaagaagccggagtgagtcatgattcgcatcaagcgat |
31710949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 341 - 438
Target Start/End: Complemental strand, 31684073 - 31683976
Alignment:
| Q |
341 |
agattcatcggttagcatatactcgatttctagctcattctcagtaacattgtgttcatagaagaagccagattgagtcatgattcgcattaagcgat |
438 |
Q |
| |
|
|||| |||| |||| ||| ||||| || ||||||||||||||||||| ||| |||| | |||||| |||||| | ||||||||||| || ||||||| |
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| T |
31684073 |
agatacatcagttaacatgtactcaatctctagctcattctcagtaatattttgttgagagaagatgccagaatacgtcatgattcgtatcaagcgat |
31683976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 36 - 76
Target Start/End: Complemental strand, 30570337 - 30570297
Alignment:
| Q |
36 |
gtccctgtgcctcctccaacatcaaccaatgattccaatcc |
76 |
Q |
| |
|
|||||| ||||||| |||||||||||||||||||||||||| |
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|
| T |
30570337 |
gtccctatgcctccaccaacatcaaccaatgattccaatcc |
30570297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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