View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8431_low_7 (Length: 463)

Name: NF8431_low_7
Description: NF8431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8431_low_7
NF8431_low_7
[»] chr1 (1 HSPs)
chr1 (13-454)||(49655925-49656360)


Alignment Details
Target: chr1 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 13 - 454
Target Start/End: Complemental strand, 49656360 - 49655925
Alignment:
Q  13 aaaaacaacattgatatttgtacaattttgacatcatat---------cgtatgaaatacactttagcctgagggtgttcgcattcgcaagagagggtga 103  Q
    ||||||||| |||||| ||||||||||||||||||||||         |||||||||||||| ||||||||||||||||| ||||| |||| ||||||||    
T  49656360 aaaaacaacgttgatacttgtacaattttgacatcatatgttcgatatcgtatgaaatacaccttagcctgagggtgttcacattcacaagggagggtga 49656261  T
Q  104 gggagttaatatataatcagaaaccatgtagaatgtgtttggaatacggtgtctgacgtgaaattctaacttctacaaaacatatctattggaaaagttt 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  49656260 gggagttaatatataatcagaaaccatgtagaatgtgtttggaatacggtgtctgacgtgaaattctaatttctacaaaacatatctattggaaaagttt 49656161  T
Q  204 gattagccacttacttgtctcaatatgatttcattaacaagaacctataaagcacttgaataattggtaacgtcttgaatagttttagacttataatttt 303  Q
    ||||||||||||||||||||||||||||||||||||||           |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  49656160 gattagccacttacttgtctcaatatgatttcattaac-----------aagcacttgaataattggtaacgttttgaatagttttagacttataatttt 49656072  T
Q  304 ttaatagacaaacgttagtgattaatttgttaatgttagagtcatatatggaccttttttgtaatactctttcaacatctcaacc------tatataaat 397  Q
    ||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||      |||||||||    
T  49656071 ttaatagacaaacgttagtgattaatttgttaatgt----------tatggaccttttttgtaatactctttcaacatctcaacctatatatatataaat 49655982  T
Q  398 gaactatgcgcttggggacggttttaaatttgtaattgaaatagttaggagtattat 454  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  49655981 gaactatgcgctcggggacggttttaaatttgtaattgaaatagttaggagtattat 49655925  T

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