View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8432_high_1 (Length: 351)
Name: NF8432_high_1
Description: NF8432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8432_high_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 12121011 - 12121343
Alignment:
| Q |
1 |
atacaacatgttcatagacctcatgggagaaatacaagttacctctaatttcttagcaatgttagaaaaaggtacattagaaacttttggtggcatcgta |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||| |||||||||||| |||| ||| |
|
|
| T |
12121011 |
atacaacatgttcatagacctcacgggagaaatacaagttacctctaacttcttagcaatgttagaaaaagttacattggaaacttttggtcgcatggta |
12121110 |
T |
|
| Q |
101 |
aagtacattttggtattaattggcacttttgtgtttcttatagacgtggtggtcatggagattagtgatgtggaagagggtcctctgattctgagaagat |
200 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
12121111 |
aagtacattttggtaataattggcacttttgtgtttcttatagacgtagtggtcatggagattagtgatgtggaagagggtcctctgattttgagaagat |
12121210 |
T |
|
| Q |
201 |
cattctttgcaacttttcgagcactagttgatgttgaacaaggtgatgtaatattaataacatacagtggttatctatcttacaaaggtaactcctcatg |
300 |
Q |
| |
|
||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12121211 |
cattcctcgcaacttttcgagcacttgttgatgttgaacaaggtgatgtaatattaagaacatacagtggttatctatcttacaaaggtaactcctcatg |
12121310 |
T |
|
| Q |
301 |
aagtaggtgattttcaagcagcagagcggtgat |
333 |
Q |
| |
|
||| ||||||||||||||||||||||||||||| |
|
|
| T |
12121311 |
aagcaggtgattttcaagcagcagagcggtgat |
12121343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University